>input_sequence_77877
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-----------------------------------------------------ATGAGCTGCACCCGGATCAGTGGCGCA
GTCCTCGTTTTTGCCTTGCTCTTCGCCTCGTTATTGCTCACGCTCTACCTTCCCGCTGCTTGTGCTCGCCATGGTGAGTT
CCTTACTGTCTTCTCTTCACCCATCGACATATCTATATCTGTAT--------ATATTTTCCTCCTTTGTTACTTTGTTGG
CTTTGTTGAGATGGTAAGATTTGCATACA-------------------TCCCTTGTTAAATCGTGGCGCTACTGTATTAC
TATCTCTGCAGTGGTGCTGCTAGAGGCCCAAGATGGCCTGAACATCGGAGGAGGCCGGCAGC---AGGTGGTTGGTGATG
ACGCAGGAAAGGCCGTCCCCGTCTCGAACGCCGGCGGCTCACGGCCAGTGAGGACGGTGGAGTTGCCCGCGGCGAGGAGG
CACCGGGTGGACGCGGCGGACGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGCAAGCCCAT
TCACAACGACGAGCCTCGCGACGACAAGCCCTAA----------------------------------------------
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>chr2A_1_TraesCS2A01G334900
TGGCCGCGCCCCCTGCCCGCTTGGTCGTGCCCCTACGAGCACTTGCGAGCTGCTGCTGCCTCCTGTGCGCCGCGCCTCGC
CTCTGGCCGCGCCCCCCGCCCGCTTGGTCGTGCCCCCGCGAGCACTTTGCTGCCTCCTGCGCGCCCCGCCTCGCCTCTGG
CTGTGCCCCCTGCCCGCTTCGTCGTGCCCCCGCGAGCACTTGCGAGCTGCTGCTGCTTCCTGCGCGCCCCGCCTCGCCTC
TGGCCGCGGCCCTGCCTGCTGCTTGCGTCGCTGCTGCTGCTGCCTCGCCCTGCCTCACCTCTGGCCGCGCCCCCTGCCCG
CTTGGCCGCCTCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGAGTGGATAATATTTCACCCCCAGAGTA
AATGTTTCGCCAGAACCCCCCGAAAGGGCGAAAAAAATGCCTCTTGAAGGCTCAACGGCTGGAGATGCTCTAAGGACCAT
CACATACTGAGTGAGATTATGTCTCTGCTCTTGGATACTTTGGGTTGAT-------------------------------
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--------CAGGCACAAGTAGGAGCAGAGCATTAAACAAGTCCTGCCTGGGGGTTCGTTAAGTAAAATTAA---------
----------------------------CCTCAGCTAGCTTTGACTGCATGTCTATCCCTAGACT---------CTAGCA
AGCCAGCCAGCCTAAAAACACTGGCCACT----GATTTCCCTATAAAACCTCAACAAAACCCAACCCTGTACCTTCTCTT
C-AACTCCTATTGACACACGAACACACATA---GCAGGAAAAGATAGAACACCATGAGCTGCACCCGGATCAGTGGCGCA
GTCCTCGTTTTTGCCTTGCTCTTCGCCTCGTTATTGCTCACGCTCTACCTTCCCGCTGCTTGTGCTCGCCATGGTGAGTT
CCTTACTGTCTTCTCTTCACCCATCGACATATCTATATCTGTAT--------ATATTTTCCTCCTTTGTTACTTTGTTGG
CTTTGTTGAGATGGTAAGATTTGCATACA-------------------TCCCTTGTTAAATCGTGGCGCTACTGTATTAC
TATCTCTGCAGTGGTGCTGCTAGAGGCCCAAGATGGCCTGAACATCGGAGGAGGCCGGCAGC---AGGTGGTTGGTGATG
ACGCAGGAAAGGCCGTCCCCGTCTCGAACGCCGGCGGCTCACGGCCAGTGAGGACGGTGGAGTTGCCCGCGGCGAGGAGG
CACCGGGTGGACGCGGCGGACGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGCAAGCCCAT
TCACAACGACGAGCCTCGCGACGACAAGCCCTAAGTCCGTCAGACCTTCCCCGCAGCGCAGC----TAGGTAGAATACAT
AGTTACAAGAAGCTTAGCTTAGCCAGAGCCGCTCTCTGCTCTACTACTGCTACTACTACAACTAGTCAGCTAGATTTGCA
GGCTTGCAGGATACCCAAATACTCCCTTTGTCCCATAATATAAGAACGTCAAGTTGGTAC------TAC---------AG
TGTATCATTAGCTGGTC-AGCCTTAATCTGGCATCCAAGATGGACATCAGGTTTAGCCCTGTTTTCTGCAAGGACTACTG
GC-AGGAGTTCGTGCG--GAAAAAGGGGCAGTTTTGTGCCGGATGTGCAGGCTTGGGGGGTATGCTATATCTACATGTAA
TGTCCTATATGTCCACCGGTAATCAGGTTTGCAGAATATCAGCGTTCTATGTGTGCC-AAACTTAT------TTTGTTGC
TTGTTCACATTCGGGTCATGGCAAACTGAAC-TCGTTCTGGTGAGTGTAATAGCTTCGACTCTTGCTCTGTTTTGGGCAT
-------------CATTGCTCGTGTCGCACTACATGTATGTA--------------------------------------
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---------------TAAGCAATCAGGAATGCTGGCAGTAGTACATGAAAGAAAGCT---ATACCTCTTCATTTCTCACT
CACAATCTCTGCAAATTACAAGCCACTGGCGAATCCGACAAGCCATCAACCTCCTGCTATTTGTAAATAAAAATAAAAGA
GCAGGGCATGTGGGGGGAGAAGAGCAAGGAAGGGG---AGAAACGATCAACATTTGAATGAATTTAACATGGGCTGGCTA
ACACTAGCTCAGGCGCGAGGCCGCCGGCCATGAGCTAGACTCATCAGACAGTTA--AAAAAAATGCTCTCAGAATTTACA
GCAGAGGACCCTGTAACCCCAGCCCCGGTCTCGCCTGAAACGCCTGCGGTCCGCCTTTGCCATCCTCACCGGGCTGCTGT
TCCACTCTGCCTGTAGCCTGTGGATCAACACATATGAGTTTATGTTACTTGAGAAAAAAGAATGTAGTGGTGATACTATT
CAGATGTCTTCACTTACAC
>chr2D_712
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-----------------------------------------------------------------------AAGGACCAT
CAGATACCGAGTGAGATTATGTCTCTGCTCTTGGATACTTTGGGTTGATACTCACCAC----------------------
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------ACCAGGCACAACCAGGAGCAGAGCATTAAACAAGTCCTGCCTGGGGGCTCGTTAAGTAAAACTAGCACGGTGGT
ACGGTCAGAAGAGATGTTCTCTAGGTATCCTCAGCTAGCTTTGACTGCATGTCTATCCCTAGACCCCTTACTAGCAAGCA
AGCCAGCTAGCCTAAAAACACTGGCCACT----GATTTCCCTATAAAACCTCAGCAAACCCCAAACCTGTACCTTCTCTT
CCAACTCCTATTGACACACAAACACATACACACGCAGGAAAAGATTGAACACCATGAGCTGCACAAGGATCAGTGGTGCA
GTCCTCGTTTTTGCCTTGCTCTTCGCCCCGTTATTGCTCACGCTCTGCCTTCCCCTTGCCTGCGCTCGCCATGGTGAGTT
TCCTCTCCAA---TCTCCA-----------------------------------------------TGTATGTTTGTCAG
TTTTG-----------AGATGCATCCATCCACCCATGGATTGATCGATCGGCTTGCTAAATCGTTGCAC-----------
--TCTCTGCAGTGGTGGCGCTGGAGGCCAAAGATGGCCTGAACATTGGAGGGGGCCGGCAGC---AGGTGGTTGGTGATG
ACGCAGGAAAGGCTGTCCCCGTCTCGAACGCCGGCGGCTCACGGCCAGTGAGGACGGTGGAGTTGCCCGCGGCGAGGAGG
CACCGGGTGGACGCGGCGGAGGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGCAAGCCCAT
CCACAACGACGAGCCTCGCGACGACGAGCCCTAAGTCCGTCAGACTTTCCCCGGAGCGCAGCTAGGTAGGTAGAGTACAT
AGTTACAAGAAGCTTAGCTTAGCTAGAGCCGCTCTCTGTTTTACTACTGCTGCTACTACAACTAGTTAGCTAGATTTGCA
GGCTTGCAGGATACCCAAATAT-------------------TATGGAATAACGATGCCCTAGTTGGTAC---------AG
TATATCATTAGCTGGTC-AGCCTTAATCTGGCATCCAAGATGGACATCAGGTTTAGCCCTGTTTTCTGCAAGGACTGCTG
GA-AGGAGTTCGTGCG--AAAAAAGGGGCGGTTTTGTGCCGGATGTGCAGGCCT-GGGGGTATGCTATATCTACATGTAA
TGTCCTATATGTCCACCGGTAATCAGGTTTGCAGAATATCAGCGTTCTATGTGTGTCAAAACTTAT------TTTGTTGC
TTGTTCACATCCGGGTCATGGCACACTGAAC-TCGTTCTGGTGAGTGTAATAGCTTCGACTCTTGCTCTGTTTTGGGCAT
-------------CATTGCTCGCGTCGCACTACATGTATGTA--------------------------------------
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---------------TAAGCAAACAGGAATGCTGGCAGCAGTACATGAAAGAAAGCT---ATACCTCTTCATTTCTCACG
CACAATCTCTGCAAATTACAAGCCACTAGCGAATCCGACAGGCCATCAACCTCCTGCTATTTGTAAATAAAAATAAAAGA
GCAGGGCATATGGGGGGAGAAGAGCAAGGAAGGGGGGGAGAAACGATCAACATTTGAATGAATTTAACATTGGCTGGCTA
ACACTAGCTCAGGCGCGAGGCCGCCGGCCATGAGCTAGACTCATCAATCAAACAGGAAAAAAATGCTCTCAGAATTTACA
GCAGAGGACCCTGTAACCCCAGCCCCGGTCTCGCCTGAAACGCCTGCGGTCCGCCTTCGCCATCCTCACCGGGCTGCTGT
TCCACTCTGTCTGTAGCCTGTGGACGAACACATATGCGTTTATGT-ACTTGAGAAACAAGAATGTAGTGGTGATACTATT
CAGATGTCCTCACTTACAC
>chr2B_725
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----TACTGAGTGAGATTATGTCTCTGCTCTTGGATACTTTGGGTTGATACTCACCACGCCAGGCCAAAAATGCTAGACA
TACAAAGACTTACACGCTTTTACACGCTCCTTCCATCTAACAACCAATCACAAACCTCTCCCCCCCTGATTTTTAAAGGG
TGGGCCGCCCCGCTCACCTATTGACCAATCAAGATTAACCATCCTGTAAAAGCTTGTAAATCGTTTGTACGTGTAGCATT
GCCGACACCAGGCACAACCAGGAGCAGAGCATTAAACAAGTCCTGCGTGGGGGTTCGTTAAGTAAAACTAGCACGGTGGT
ACGGTCAGAAGAGATGTTCTCTAGGTATCCTCAGCTAGCTTTGACTGCATGTCTATCCCTAGACCCCATACTAGCTAGGA
AGCCAGCTAGCCTAAAAACACTGGCCACTCACTGATCTCCTTATAAAACCTCAACAAACCCCAAACCTGTACCTTCTCTT
CCAACTCCTATTGACACACAAGCACATACACACGCAGGAAAAGATTGAACACCATGAGCTGCACAAGGATCAGCGGTGCA
GTCATCGTTTTTGCCTTGCTCTTCGCCCCGTTATTGCTCATGCTCTGCCTTCCCCTTGCCTGCGCTCGCCATGGTGAGTT
TCCTCTCCAA---TCTCCA-----------------------------------------------TATATGTTTGCTAG
TTTTG-----------AGATGCATCCATCCA----TGGATTGATCGATCCGCTTGCTAAATCGTTGCAC-----------
--TCCCTGCAGTGGTGGCGCTGGAGGCCAAAGATGGCCTGAACATCGGAGGAGGCCGGCATGTGGATGTGGTTGGTGATG
ACGCAGGAAAGGCTGTCCCCGTCTCGAACCACGGCGGCTCACGGCCAGCGAGGACGGTGGAGTTGCCCGCGGCGAGGAGG
CACCGGGTGGACGCGGCGGACGAGTTGCACGACATGCTGAGGAGGGACTACGCGTGGAGGGCGAGGCGCCGCAAGCCCAT
CCACAACGACGAGCCACGCGACGATGAGCCCTGAGTCTGTCAGACCTTCCCCGCAGCGCAGCTAG---------GTACAT
AGTTACAAGAAGCTTAGCTAGCTA------GATCAGTGTTTTACTACTGCTACCGCTA-----------CTAGATTTGCA
GGCTTGGAGGATACCCAAATATAGCTTAGATGCCCAAATACTATGGAATGATGATGCCCTGGTTGTGGTTGGCTAGGTAT
ATCATTAGTTGGTCAGCTAGCCTTAATCCAGCATCCAAGATGGACATCAGGTTTAGCCTTGTTTTTTACAAGAACTGCTG
GATAGGAGTTCATGAG--AAAAAAGGGGCAGTTTTGTGCCGGATGTGCAGGCTTGGGGGTACCA-------TACATGTAA
TGTCCTATATATCCACCGGTAATCAG-TTTGGCGGATATCAGTGCCATATGCGTGTC-AAACTTAGTAATACTTTGTTGC
GTCTTCACATACGGGTTATGGCAGACTGAACCTCGTTCTGGTGATTGTAATAGCTTTGGCTCTTGCTCTGTTTTCTCCTT
CTAACACAATGGGCATTGCTCGCATCACACTACTACATGTCAAAGCCGGGGCTTAACTTGAGTGGACTGGCAGCTACCCC
AGCTGTCCAGCCAACGGGTTGACACCCTGTCCTCAACATGGACTAGTAACATATGCATGTTACTACTAGTAAGTTACTCC
CCACTATGACCAGCCTAAACAATCAGGAATGCGGCTG---GTACATGAAAGAAAGCTGCTATACCTGTTCATTTCTCACG
CACAATCTCTCCAAATTACAAGCCACTAGCGAACCCGACAAGCCATCAACCACCTGCTATTTGTAAATAA-AATAAAAGA
GCAGGGCATATGGGGGGAGAAGAGCAAGGAA-GGGGGGAGAAACGATCAACATTTGAATGAATTTAACATTGGCTGGCTA
ACACTAGCTCAGGCGCGAGGCCGCCGGCCATGAGCTAGACTCATCAATCAAACAGGAAAAAAATGCTCTCAGAATTTACA
GCAGAGGACCCTGAAACCCCAGCCCCGGTCTCGCCTGAAACGCCTACGGTCCGCCTTCGCCATCCTCACCGGACTGCTGT
TCCACTCAGTCTGTAGCCTGTGGATGAACACATATGAGTTTATGT-ACTTGAGAAAAAAGAATGTAGTGGTCATACTATT
CAGATGTCTTCACTTACAC
>chr2B_833
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----------------------------CCTCAGCTAGCTTTGACTGCATATCTATCCCTGGACCCCATACTAGCAACT-
--------------AAAACACTGGCCATT----GCTTTCCCTATAAAATCTCAACAAACCTCAACCCTGTACCTTCTCTT
C-AACTCCTATTGACACACAA--------ACACACAGGAAAAGATCGAACACCATGAGCCGCAGAAGGATGAGCAGTGCA
GTCCTTGTGGTTGCCTTGCTCTTCTCCCCATTATTGCTCACGCTCTACCTTCCCGCTGCTTGCGCTCGCCACGGTGAGTT
CCCGCTACTG---TCTCCACCGATCGACACATCTCTATCTGTATTGCTGTATATATTTCCCC--------TGTTTGTTGG
TTTTG-----------AGATTTGCATCCA-------------------CCCCTTGTTAAATCGTGGCACC--------AC
TATCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGGCCTGAATCTCGGAGGCAGCCGGCAGC---ATGTGGTTGGTGATG
ACGCAGGAAAGGCTGTCCCTGT---------CGGCGGCTCACGGCCAGTTAGGACGGTGGAGATGCGCGCGGCGAGGAGG
CACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTACTCGTATAGGGCGAGGGGCAAAAAGCCCAT
CCACAACGACGAGCCACTCGAGGATGAACCCTAAATCAGACC--------------CGTAGCTAG---------GTACAT
AGTTAT-AGAAACTTAGC-TAGCTAGAGCCGCTCTCTGATTTACTACTACTG---------CTAGTTAGATAGATTTGCA
GGCTTGCAGGATAC----ATATAGCTTAGGTACCCAAATATTATGGAACAATAATGCCTG------GGTTGGCTAGGTAG
TTTATTATTAGCTGGTC-AACCTTAATATAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTT--GCAAGAACTACTG
GT-AGGAGAAGTTCATGCGAAGAAGGGGCAGTTTTGTGCCTGATGTGCACGCTTGGGGGCTATGCTA-------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
--S-----------------------------------------------------------------------------
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-----------------SS------------------------------------------------S--S---------
----------------------------------------------------------------S---------------
-------S--------------------------------------------------S---------------------
-------------------S------S-S----------------S------------------SS----------S---
---------------------------S----------------------------------S-----------------
--S-SSSS-SSSS---S----S-------S----S-----------------------S--SSSSS---SSS--------
S----SSSSSSSSSSS--------------------------------S------------------S-SSSSSSSSS--
----------------S----S------S---------------------------------------------------
-------------S------------------------------------------------------------------
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S------------------------S------------------------------------------------S-----
-----------------------S--------------S-S-------------------------S-------------
---------------------SSS-S-SS--S--SS-----S-SSSSS-S-S-S--SSSS--------------------
-S------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
----------S------------S--------------------------------------------------------
----------------------S---------------------------------------------------------
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--------------------------------------S----------------------------------------S
---------------------------S----------------------------------------------------
---------S------------------------------------------------------------S---------
----------------------------------------------SS--SSS---------------------------
---------------------------------------------------------S----------------------
---------S---------------S-------------------S----------------------------------
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>forward_979
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-------------------------------------------------------------------------------T
GGGTTGATCAGGCACAAGT-------------------------------------------------------------
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>reverse_2251
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----------TCGGGTCATGGCAAACTGAA--------------------------------------------------
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