>input_sequence_77866
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---------------------------------------------------------------------------ATGGG
CGTGACCAAGGAGGACGTGGAGGCCGCCGTCGCCGCCGCGCTCAGCCCCACCCACCTCGTAAGCCTCCCTCCCCTCTCTC
TCCAAACCCCTCCCGCCAGCCCGCCCATGGCCCGTCTCCGCCTTAAACCCTAACCTAACCC-----GTGTGTTTTTCCTC
CGATTTCAGGTGGTCACCGATACATCCGGCGGGTAAGCAGCCCACGCGATCTCCCGAAACTTCTACTGCTCTTTTCCTCC
CCTGTAAGCTTGTTCGTTCGATTGGTGGTCTTGATTGATTGATGGGATTGTGATTGGTGCGAAGGTGCGGCGCGAGCTAC
GAGATCGAGGTGGTGTCGGTCAAGTTCGAGGGGAAGCGGCTGCTGGACTGCCACCGGATGGTCAACACCGCGCTGGCGCC
GCTCATGGCCGAGATCCACGCCGTCTCCATCAAGGCGCTCACCCCCGCACAGGCCCAGCCCAAGCCCCAGCCGGAGCCGG
CCGCCGCCG---CCGACAAGTCGCAGCAGGCCTGA---------------------------------------------
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>chr3A_1_TraesCS3A01G378100
GTACT-TTTTCTGTTTTTAGTGACTTGCCAAAAAAATCTCCTTCTGTGTTTATCTAGTCTCGCAATCGTGGTCTTTGAAA
GCAAAAACATGGACATGTAGTAAAAAGCAATGCTTGAGATATTAGCACTGAGCAGGGTTAGTCTACCTCCAGAGGAAGCA
TTGCTCCCTAAACCGGACTCACATCCGCCCGCCGCGCACGGACTCCAAGAAATATATGGTGATAATGTGAGGTGGGCCAT
GCTGGAGTCCGGACCGCTTCCGGAGCCCGCTCTCACCGCCCTGGCCCCTCAAGACGCCAGCTGCCCGCCGCATGCATGCA
TAACAAGTAGTACTCCTTATGTGGAGGAGAGAGAGACATTGACAAAGTCAAGGAGTGGGCTCTGCAAGAGCCCGTCTGTA
CACGTGCTCCTAGGTATAAAAAAATAATTCTAAAAAAGGCATAAAAAACAATTGTGTCTTAAAAGAAAGATCGTCCCCTC
CAACACACAAAATTTCACTTTTCTGGAAGTTGATTTTCAATCCTGACATTAGCTCAAACATATAGAGCAGTATT-TTCAT
ATTTAGGGTTTTCTCAGGGTCATGCTCGATGCAAATCACCGTATCATCAACATATTGTAATATGGCCACGCCATTTTCCA
CTAATTCAGGGGCTAGCCCAGTAATCAGTCCATGTTTCTGTGCTTGACGCACCATTTTGGACAAACATTCAGCTGCGATG
TTAAATAGGAACGGAGAAATAGAATCCCCTTGTCATATATAGGAAAGAAAACCCACCAAATATTCGATTCCCGGCCCGCT
ACGACTTGAGGAAGAACATC-GTGACGGGCAAATTCGTGACT---CCGAGACCACAGCATCCGAAATATTCTCCTGGG--
-----CAAGTGGGATAAGTTGATAGGAGGAAG--ACACGGGCAATCGGGAAGTCTTCCTTGT-------TTGCCTTGGCT
CCGCCGGAACAGA--GAGACCGAGAAGAGAGGGCGAAGAGG-----------AGGCAATCGCGAACAGAGCAGCCATGGG
CGTGACCAAGGAGGACGTGGAGGCCGCCGTCGCCGCCGCGCTCAGCCCCACCCACCTCGTAAGCCTCCCTCCCCTCTCTC
TCCAAACCCCTCCCGCCAGCCCGCCCATGGCCCGTCTCCGCCTTAAACCCTAACCTAACCC-----GTGTGTTTTTCCTC
CGATTTCAGGTGGTCACCGATACATCCGGCGGGTAAGCAGCCCACGCGATCTCCCGAAACTTCTACTGCTCTTTTCCTCC
CCTGTAAGCTTGTTCGTTCGATTGGTGGTCTTGATTGATTGATGGGATTGTGATTGGTGCGAAGGTGCGGCGCGAGCTAC
GAGATCGAGGTGGTGTCGGTCAAGTTCGAGGGGAAGCGGCTGCTGGACTGCCACCGGATGGTCAACACCGCGCTGGCGCC
GCTCATGGCCGAGATCCACGCCGTCTCCATCAAGGCGCTCACCCCCGCACAGGCCCAGCCCAAGCCCCAGCCGGAGCCGG
CCGCCGCCG---CCGACAAGTCGCAGCAGGCCTGATTCGTCGCTGAATGAAGCACTAGTACTGAAACCACAACACATGCG
CTGTTGGATGTTGGGAACTCGCATTATACACTA--CTCTGCTTGAATGAATAATGTAG-------CAAGATGCGTCTGCG
GAATCGAGACTTTGCAGTGGCGCCATGCCTGGCTGATTAAGATTTTGCTTCGTTTTGTCTA------TGTGATTGTGATG
ATTTATAGTGCTTCTGCTCTAACCGTGTTGGCCTGACATTGTGTGGCGACATGTTCCTGAGTTTCTGTGGTATGCGCGGT
TTGCAGTTCAGGGCTCCTTTGATTCAAGGGAATTCTATAGGATTTTTGGAGGATTGACATCCTTGAAATTTTTTTCTATG
TTTGTCCTATAATTCATAGGATTGAACCCATAGAAATTTTTCCAATGAAATTTTTTGTACTACATTTCATAGGAAATCTA
ACATCCACTCTAACTTCTTTTTACAATTCCTTTGCTTTTCCCGTGAAATCAAACACTCCTTGCTAATCCTATAGGATTCA
AGTGGGCATGACACTCCAATCCTATACTTTTTCTATTCTCGCGTTTTCAAAATCCTACAAATCAAAGAGATCCTCAGTTT
CTTCTTTGGTCGATTTGCTTCTGTTGAATGTGATGGCTTTCTTTTTATTGCTGCAAATTGGTTTGTTTCCCTTTGTTGTC
TTGCATACTAGCTGTAATTCAGGGGTTGACATACTAGGGCCTTCTTTGGTTTAGAGGAATTTCATAGGAATTCTAGAGGA
TAGGATTTTTATAGGATTTTTTCCTTTAGAGCCATTTGGTTCATAGGAATGGATTCCTATTCTTACATAGGATTGGTTCC
TATCCTCCACATTTCATAGGAAAATAAAAAAGAGCCTAGACTCAATGGAAAATTTCCTTTGATGTCAACCAAATGACATC
TTGTTTCCTATTTCTACTTATAGGATTTGAGATACATGTCATCTTATTTCCTATAAGATTTCTATTCCTATGATAATCCT
ATCCTATGAA
>chr2B_1
GTACCTTTTTCTATTTTTTGTGACTTGCCAAAAAAATCTTCTTCTGTGTTTATCCAGTCTTGCAATCATAGTTTTTGAAA
GTAAGAACATGGACAGGTAGTAAAAGGCAATGCTCGAGATATTAGCATTGAGCAGAGTTAGTCTACCTCCCGAGGAAGCA
TTGCTCCCTAAACCGGACTCGCATCTTTTGACATATCTTTCTTCCAAGAATTCCCAGTCCACTCCTTTTAAGGTTGAGTA
GCTTACTGGTACTCCCAAATATTTCATTGGAAAATGCCCAATCTGGCAATTAAACATAGCAGCATATGTTGTCAGGATAT
CATTGC--------------------------------------------------------------------------
--------------------------------------------------------------------------CCCCTC
CAACACACAAAATTTCACTTTTTTGGAAATTGATTTTCAATCCTGACATTAGCTCAAACATATATAGCAGTATTTTTCAT
ATTTAGGGCTTTCTCTGGGTCATGCTCGATACAGATCACCGTATCATCAGCATACTGTAAGATGGCCACACCATTTTCCA
CTAATTCAGGGAAAAGTCCAGTAATCAGACCATTATTCTGTGCTTGACGCACCATTTTGGACAAACATTCGGCAGCAATG
TTGAATAAGAATGGAGAGATAGAGTCTGCTTGTC----------------------------------------------
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>chr3B_755
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------------------------------------ATATAGGAAAGAAAAAACACCAAATATTCGATTCCTAGACCACT
ACGACTTCAGGAAGAACATTGGTGACGGGCAAATTCGTGACTCCGCCGAGACCACAGCATCCGAAATATTCTCCGGGG--
-----CAAGTGGGATAAATTGATAGGAGGAAG--GCACAGGCAAGTTGAAAGTCGCCTTCTTGTTTGCCTTGCCTTGGCT
CCGCCGGAACAGACAGAGACCGAGAGGAGGCGA-----------------------AATCGCGAACAGACCAGCCATGGG
CGTGACCAAGGAGGACGTGGAGGCCGCCGTCGCCGCCGCGCTCAGCCCCACCCACCTCGTAAGCCTCCCTCCCATCTCTC
TCCAAACCCCTTCCGCCAGTCCGCCCATGGTCCGTCTCCGCCTTAAACCCTAACCTAACCC-----GTGTGTTGTTCCTG
CGATTTCAGGTGGTCACCGATACATCCGGCGGGTAAGCAGCCCACACGATCTCCCGCAACTTCTACTCCTTTT---CTCC
CCTGTAAGCTTGTTCGTTCGATTGGTGGTCTTGGTTGATTGATGGGATTGTGATTGGTGCGAAGGTGCGGCGCGAGCTAC
GAGATCGAGGTGGTCTCGGACAAGTTCGAGGGGAAGCGGCTGCTGGAGCGCCACCGGATGGTCAACACCGCGCTGGCGCC
GCTCATGGCCGAGATCCACGCCGTCTCCATCAAGGCGCTCACCCCGGCGCAGGCCCAGCCCAAGCCCCAGCCGGAGCCGG
CCGCCGCCGCCGCCGACAAGCCGCAGGCCTGACTCGCTCC----GAAGGAAGCACTGGTACCGAAACCACACCATGTCCG
CCGTTGGATGTTGGGAATTCGCATCATACAGTACTCTCTGCTTGAATGAATAATGTAG-------CAAGATGCGTCTGCG
GAATCGAGACTTTGCAGTGGTGCTATGCCTGGGTGA-TAAGATTTTGCTGCGTTTTGTCCA------TGTGATTGTGATG
ATTC--AGCGCTTCTGCTCTAACTGTGTTGGCCTGAGATTGTGTGGCGACATGTTCCTGAGTTTCTGT------------
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>chr3D_764
AG------------------------------------------------------------------------------
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------------------------------------------------AAAAGCACCAAATATTCGATTCCTAGACCACT
ACGACTTGAGGAAGAACATC-GTGACGGGCAAATTCGTGACTCCG---AGACCACAGCATCGGAAATATTCTCCTGGGCA
AGTGCCAAGTGGGATAAATTGATAGGAGGAAGCCGCACAGGCAAGTTGAAAGTCGCCGTCCTGTTTGCCTTGGCAGAACA
G-------ACAGA--GAGACCGAGAAGAGAGGGCGAAGAGGGGAGCAGGAGGAGGCAATCGCGAACAGACCAACCATGGG
CGTGACCAAGGAGGACGTGGAGGCCGCCGTCGCCGCCGCGCTCAGCCCTACCCACCTCGTAAGCCTCCCTCCCCTCTCTC
TCCAAACCCCCTCCGCAAGTCCGTCCATGGCCGGTCTCCACCTTAAACCCTAACCTAACCTAACCTGTGTGTT---CCTG
CGATTTCAGGTGGTCACCGATACATCCGGCGGGTAAGCAGCCTGAAATCTGTGTAA------------CTTTT---TTGC
CCTGTAAGCTTGT-----------------TTGATTGATTGATGGGATTGG--TTGGTGCAAAGGTGCGGCGCGAGCTAC
GAGATCGAGGTGGTGTCGGACAAGTTCGAGGGGAAGCGGCTGCTGGAGCGCCACCGGATGGTCAACACCGCGCTGGCGCC
GCTCATGGCCGAGATCCACGCCGTCTCCATCAAGGCGCTCACCCCCGCGCAGGCCCAGCCCAAGTCGGAGCCG-------
-----GCCGCCGCCGACAAGGCGCAGGCCTGACTCGCTCTTT----AGGATTCACTAGTACTGAATTC---ACACATGCG
CCGCTGGATGTCGGGAGCTCGCATCATACAGTACTCTCTGCTTGAATGAATAATGTAGCAACTAGCAAGATGCGTCTGCG
GAATCGAGACTTTGCAGTGGCGCTATGCCTGGCTGA-TAAGACTTTGCTGCATTTTGTCTATGTGATTGTGATTGTGATG
ATTC--AGTGCTTCTGCTCTAACTGTGTTGGCCTGAGATTGTGTGGCGACATGTTCCCGAGTTTCTGTCATATGTGCGGT
TTGCAGTTT-----------------------------------------------------------------------
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---------------------------------------------------------------------------AGTTT
CTTCTTTGGTCGATTTGCTTCTGTTGAATGCGATGGC-----TTTCATTGCTGCAAATTGGTTTGTTTCTCTTTGCTGTC
TGACATACTAGCTGTTATTTAGG---------------------------------------------------------
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>SNPs
----S-------S-----S--------------------S--------------S-----S------S-S--S-------
-S--S----------S---------S--------S------------S-------S--------------S---------
--------------------S----SSSSSS-SSSS-SSSSSSS-S-SS-SSSSS-SSSSSS-SS-S-S-S-SSS-SSSS
---SSSSSSSSSS--SSSSSSSSSSSSS-SSSSSSS-S-SS-SSSS-SSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSS
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
----------------------S-----S-----------------------------------S---------------
--------S------S--------------S--S---------------S----S-----S--------S----------
-----------SSS--S-----------S----SS-----------------------------------S--S--S---
--S----S---S-----S-----S--SS------SS---------------SS------------------SS-S--S--
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-----------------S----------------S---S-----SSS-S-----SS-S-SS-------------------
---------------------------------------------------------------------S----------
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-----------S-------S-----------------------------------------------------S-----S
---------------------------------------------S----------S----------S--S--SSS----
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-------------------S---------------------------SS-------------------------------
------------------------------------------------S-------------------------------
--------------------S-----SSSSSSSSSSSSS-SSSS---S--------------------------------
-S----------------------S-----S-------------------------------------------------
-----------------------S------------S------------S------------------------------
---SSS-----------------S------------S-------------------------------SS----S-----
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
------------------------------S------SSSSS---S-----------------------S-----S----
-SS------------S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_798
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----------------------------------------------------------AATATTCGATTCCCGGCCCG--
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>reverse_2083
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--TGGGCATGACACTCCAATCC----------------------------------------------------------
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