>input_sequence_77839
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------------------------------------------------------------------ATGAGGCCCGGAGC
CGAGTACCCCATGGCCCACGGCCCCGCGGCGGCG---CCGCGCTCGACGTGGCAGACGCCGGTGCCGTACCTCTTCGGCG
GGCTCGCGACGATGCTGGCCCTCATCGCGCTCTCGCTCCTCACCCTGGCCTGCTCCTACTGGAAGCTCTCCGGCGGCCTC
GCCGGCCCGGACGAGGACCAACCCCCGGGCTCCGACGGCGAGAAGGGCTCGGCCGCCGGGCCCGCGAGGGAGTGGCTGGG
GCACGTGGTGGTCATCATGGCCGGCGACGAGCAGCCGAGTTTCCTGGCCACGCCGGCGTCGATGACGAGCAGTGCCGCTG
ACGGCGGCGCTGAGACCGCAGCCGGCGCCGCGGCGTGCTGCGCCGCGTGCAGGTCGGAGGAGAGGAAGATGGAGGATGCG
CGCGAGGCCGGTGCGCAGCCAGCCGGCTCCGAGGACGACGCGCGGCCAGCCAGCCCAAGTGAGCTACCA---AGTAGCAG
TACCAGCTCTGTAATTAGCAGCTAG-------------------------------------------------------
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>chr6D_1_TraesCS6D01G140800
TCCAGCGACAACAGTGTTGGCGTGTCGTTCACTTTCAAGAGGTATGGTTGTTGAAACACCTATCATATTTCCCCGGGGTT
CCCATCATTAATGGTTGATGCAAATATTTGCTGCAATTGATCTAGTAATCATTTTCTGTGTGCATCATCGATGCCCTGAC
TAGCTCTTGAAATCATGTGCAAGGATCAGAGTGTAGGTTGATATCGTCTTCATATTAGTATATTCTCTTTATCAAAAATG
ATATTAAATACAACTTCAAATGAATTAATATATGCTATTTATTCTCTTTATCATAATTCTCTTTCACA-------TTCTT
GTTGAAATTATGTCAAATATGTACGTGTGTATTGACTACGGTTAGACTGAAGTATGAGGCAAAAAAAAAAAGACTTGAAG
TATGAGGAGGATATGTGTTTGAGTTGAAGCATGTAACTCGGATCAATTATATGAAAGCACTGCAGGGTAGCCAAAATAGG
CTCAGTGAACCTGGTAGGATCGTGGCAGGGATGCCTGGAACAGGTCA-------TGGGGTGGCAATCGAGCTATGTCACA
TGGCTTTGGCGGGCGT---GTAGTTGATATGTATGGATTTAGTACAGGAGATGAGCGTTCATAGTCATATACCGGAGATG
TAACTCATGTTTGATAGGCGATGGACCTCGTTAACAAAATATTGTCTTTTTC--ATATACTTTCTGCAATGAACTAATCA
CGCGTAAACCCTAATACTAGTTCTTATGACACGTCGAAAAGTCAGCTGACGTTGTGCTTTTGCACGTTGCTCCCAGAAAT
CAAGACCATTTCCTCA-CCCGCCGGTCTACT-GTACTGTGAGCGCAGCTTCGCTAATGGACCTCTATATATAAT-----G
GACCAGAGCAATTAGCGAGTACTGCCCCTCCCATTCCTACGGGAATTTTATGTGGAACGTAGCAGCATCACACCACCCAG
ACAACAGACAACACAGACAACAGAGAGGCATACACTGCTGTCATTGGAACGGTAGCGACCCATGCCATGAGGCCCGGAGC
CGAGTACCCCATGGCCCACGGCCCCGCGGCGGCG---CCGCGCTCGACGTGGCAGACGCCGGTGCCGTACCTCTTCGGCG
GGCTCGCGACGATGCTGGCCCTCATCGCGCTCTCGCTCCTCACCCTGGCCTGCTCCTACTGGAAGCTCTCCGGCGGCCTC
GCCGGCCCGGACGAGGACCAACCCCCGGGCTCCGACGGCGAGAAGGGCTCGGCCGCCGGGCCCGCGAGGGAGTGGCTGGG
GCACGTGGTGGTCATCATGGCCGGCGACGAGCAGCCGAGTTTCCTGGCCACGCCGGCGTCGATGACGAGCAGTGCCGCTG
ACGGCGGCGCTGAGACCGCAGCCGGCGCCGCGGCGTGCTGCGCCGCGTGCAGGTCGGAGGAGAGGAAGATGGAGGATGCG
CGCGAGGCCGGTGCGCAGCCAGCCGGCTCCGAGGACGACGCGCGGCCAGCCAGCCCAAGTGAGCTACCA---AGTAGCAG
TACCAGCTCTGTAATTAGCAGCTAGCGAGATAGTACAATTTACATGGAAGGTCTTTTTACATGGAAGGTCTTTTTTTTCT
GTTTATGTTGCAGTTTTCCTCTGCGGGGTTTTC-TGCTGTTTAATTCAGTAGCTGTAAATTTTCTACTGTGGCGATCATT
GAAGAATACCTCGTTTAGAAAATTTTGATCGTTTGTATCGTATATA--ATCAAGCACAACAAAAACTTTACAGAGAACAT
CAACTTGATTTCGCCTTTATATGAGTAGCTAACATGTGC--TTACAAAACACACTTAACTTGCAAGTGATTGAGGACAAC
C-------------------------ATGGGAGAGATTTCTAACAGATGGAAGGAAGCAACATGATGGCAGTGTAGACTT
TTTTTTTTGAAAGGGATGGCAGTGTAGACTTGGAGCCAGCCTATGGATGAGTGGGGTCT-----GAAGACAAGCTCTCGG
TGAGCCGTCAGGTCGTTTTTCTTTTGTCCGCATGGATCCATCGACGCATGCACGTGAGCATGTC----ATACATATCCGG
TCCAGCTATCCGAACATGTTGGAGTTACAAAACCGATCGAGATTACTGACAGTATACGTGCTAGAATAATGTGTTGTGTA
TATGTATTGGTGGCGTACGTGCGTGTAGTTTTCCCTGTAACACGCACGACCCCACGCTCCCGCTCACGACCAGCCCACGA
TCACCATCGTGGATTCGTGCCCTCTCTGTAACCTCATATAAGCTGTCCGATGGCAATACGATTGTTGTGTTCAATCTCTT
ATCTCTTTTGTTGAGTATATATTGTATACGTGTATATTGTGTATTGAGCCCACCTCCTAGTTTCTCGCTCGCACCTAGCG
TTCCTAGCTGCATGGAGTAAGCCGTTGCCAGGTGTGATGGACCCCTTTATTGCTAAGCTCAAGGCATTTCGGAAGGGAGT
GATCTTTGCTCACCTCCGCGGATACTCACATGTGATCATGCAGGTCGACTACCTTGAGCTAGTCAACCTATGGTACTCGC
GAGACAATACGCGGTCTATTGCCT
>chr6B_1
TCCAACGACAACAGTGTTGGCCCGTAGTTCACTTCCAAGAGGTATGGTTGTTGAAACACCTATCATATTTTCACAGGGTT
CCCATCATTAATTGTTGATGCAGATATTTGCTGCAATTGATCTAGTAATCATTTTCTGGGTGCATCCTCGATGCCCTGAC
CAGCTCGTGAAATCATGTGCAAAGATCAGAGTGTAGGTTGATATCTTCTTCATATTAGTATATTCTCTTTATCAAAAATA
ATATTAAATACAACTTCAAATGAATTAATATATGCTATTTATTTTCTTTAAAATAATTCTCTTTCACA-------TTCTA
GTTGAAATTATGTCGAATA----TGTGTGTATTGACTATGGTTACTCGGTT-------------------AGATTTGAAG
TATGAGTAGGATATGTGTTTGAGTTGAAAGATGTAACTCAGATCAATTATATAAAAGCATTGCAGGGTAGCGAAAATAAA
CTCAGTGAACCTGGTAGGCTCTTACACACAAGATCTGGAACAAGTCATGGCTCATGGGGTGGCAATCGAGCTATGTCACA
TGGCTTTGGCGGGCTTCTAGTAGTTGATATGTTGGGATTTAGTACACGAG-------TCCATAGTCATACCCCGGATACG
TAACTCATGTTTGATGGGCGATGGACCTCGTTAACAAATATTGTC--TTTTC--ATATACTTTCTGCAACGAACTAATCA
CGCGTAAACCCTAATACTAGTTCTTATGACACGTCGGAAAGTCAGCTGACGTTGTGCTTTTGCACGTTGCTCCTAGAAAT
CAAGACCATTTTCTCACCCCGCCGGTCTACT-GT---------------------ATGGACCTCTATATATAGGGATAGG
GACCAGAGCAATACTACTCC---------CCCATTCCCACGGGAATTTTATGTGGAACGTAGCAGCATCACACCACCCAC
GCAACAGAA---------AACAGAGAGGCGCGCACTGCTGTCACTGGGACGCTAGTGACCCATGCCATGAGGCCTGGAGC
CGAGTACCCCATGGCCCACGGCCCCGCGGCGGCGGCGCCGCGCTCGACGTGGCAGACGCCGGTGCCGTACCTCTTCGGCG
GGCTCGCGACGATGCTGGCCCTCATCGCGCTCTCGCTCCTCACCCTGGCCTGCTCCTACTGGAAGCTCTCCGGCGGCCTC
GCCGGCCCGGACGAGGACCAACCCGCGGGCCCCGACGGCGAGAAGGGCTCGGCCGCCGGGCCCGCGAGGGAGTGGCTGGG
GCACGTGGTGGTCATCATGGCCGGCGACGAGCAGCCGAGTTTCCTGGCCACGCCGGCGTCGATGACGAGCCGCGCCGCGG
ACGGCGGCGCCGAGACGGCGGCCGGCGCCACGGCGTGCTGCGCCGCGTGCAGGTCAGAGGAGAGGAAGATAGCGGATGCG
CGCGAGGCCGGCGCGCGGCCAGCCGGCTCCGAAGACGACGCGCAGAGGCAGAGCCCGAGTGAGCTGGCTAGCAGTAGCAC
TAGTAGCTCTGTAATTAGCAGCTAGCGAGATGGTGCAATTTACATGGAAGGTCTTTTTTTTTCTATGGATTTCTTT----
-------CTGTAGTTTTCTTCTGCGGGGATCTTGTGCTGTACAATTCAGTAGCTCTAAATTTTACACTGTGGCGATTATT
CAAG-ATACGTCGTTTAGAC-ATTTTGATCGTTTGTAAAGTATATA--ATTCCGCACAACAAATTTTTTACAGAGAA-AT
CAACTTAATTTCATCTTTATATATGGGTAGCCAATATGTA-TTACAAAACACACTTAGTTTGCAAGTGATTGTGGATGCT
GGATGCATACACGACAACCATATGATATGAGAGAGATTTCTAACAGATGGAAGGAAGCAACATG----------------
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>chr6A_1
TCCAGCAACGACAGTGTTGGCGTGTCGTTCACTTTGAAGAGGTGTGGTTGTTGGAACACCTATCATGTTTCCCCAAGGTT
GCCATCATTAATGGTTGATGCGGATATTTGCTGCAATGGATCTATTAATCATTTTCTGTGTGCATCCTCAATGCCCCGGC
TAGCTCTTGAAATCATGTGCAAAGATCAGAGTGTAAGTTGATATCTTCTTCATATTAGTATATTCTCTTTATCAAAAACA
ATATTAAATACAACTTCAAATGAATTAATATATGTTGTTTATTCTCTTTATCACAATTCTCTTCAATATCAATTGTTCTT
GTTGAAATTATGTCAAATA----CGTGTGTATTGACTA--------CGGTT-------------------AGACTTGAAG
TATGAGGAGGGTATGTGTTTGAGTTGAA---------------------------------GCAGGGTAGCCAAAATAGA
CTCAGTGAACCTGGTAGGCTCTC---------------------------------------------------------
----------------------GTTGATATGTATGGATTTAGTACACGAGAGGAGTGTCCATAGTCATACTCGGAGGATA
TAACTCATGTTTGATGGGCGATGGACCTCGTTAACGAATAGTGTC--TTTTTTTATATACTTTCTGCGATGAACTAATCA
CGCGTAAACCCTAAAACTAGTTCTTATGACACGTCGAAAAGCCAGCTGACGTTGTGCTTTTGCACGTTGCTCCTAGAAAT
CAAGACCATCTTCTCACACCACCCACGCAACAGTACTGTTAGTGCAGCTTCAGTAATGGACCTCAATATATAGGT-----
GACCAGAGGCATTAGCGAGTAGCACCACTCCCATTCCCACGGGAATTTTATGTGGAACGTAGCAGCATCACACCACCCAC
GCAACAGACAACACAGACAACAGAGAGGCGCGCACTGCTGTCACTGGGACGCCAGCGACCCATGCCATGAGGCCCGGAGC
CGAGTACCCCATGGCCCACGGCCCCGCGGCGGCGGCGCCGCGGTCGACGTGGCAGACGCCGGTGCCGTACCTCTTCGGCG
GGCTCGCGACGATGCTGGCCCTCATCGCGCTCTCGCTCCTCACCCTGGCCTGCTCCTACTGGAAGCTCTCCGGCGGCCTC
GCCGGCCCGGACGAGGACCAGCCCGCGGGCTCCGACGGCGAGAAGGGCTCGGCCGCCGAGCCCGCGAGGGAGTGGCTGGG
GCACGTCGTGGTCATCATGGCCGGCGACGAGCAGCCGAGCTTCCTGGCCACGCCGGCGTCGATGACGAGCCGTGCCGCCG
ACGCCGGCGCGGAGACC---------------GCGTGCTGCGCCGCGTGCAGGTCGGAGGAGAGGAAGATGGCGGATGCG
CGGGAGGCCGGCGCGCAGCCAGCCGGCTCCGAAGACGACGCGCAGAGTCTGAGCCCGAGTGAGCTGCCTAGCAGTAGCAC
TAGTAGCTCTGTGATTAGCAGCTAGCGAGATAGTGCAATTTACATGGAAGGTC--TTTTTTTCTATGGATTTCTTT----
-------TTGTAGTTTTCCTCTGCGGGGATCTTGTGCTGTTCAATTCAGTAGCTGTAAATTTTACACTGTGGCGATTATT
CAAG-ATACGTCGTTTAGAC-ATATTGATCGCTTGTAGAGTATATATAATTCCGCACAAGAAAAACTTTACAGGGAA-AT
CAACTTAATTTCATCTTTATATATGGGTAGCCAATATGTAGTTACAAATCACACTTAATTTGCAAGTGATTGAGGA----
---TGCATACACGACAACC-----ATATGAGAGAGATTTCTAACAGATGGAAGGAAGCAACATGATGGCAGG--------
-----------------------GTAGACTTGGAACCAGCCTATGGATGAGTGGGGTGGGGTCAGAAGACAGGCTCTCGG
TGAGCCGTCAGGTCGTTTTTCTTTTGTCCGCATCCATCCATCGACGCATGCACGTGAGAATGTCATACATACATATCCGG
TCCGGCTGTCCGAGCATGTTGGAGTTACGAAACCGGTTGAGATTACTGACA-----------------------------
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>SNPs
--------------------------------------------------------------------------S-----
----------------------S-------------------------------------------S-------------
----------------------S----------------------S---------------------------------S
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-------------------SSSS---------------S-----SS-S-SSSSSSSSSSSSSSSSSSSSS----------
----------------------------SS---------S------------S------S-------------------S
------------------S--S-SSSSSSS-SSS--------S-------------------------------------
--------------S-------------------------------S----S---S--S----------SS---------
---------------S----------------------SSS-SSSSS---------------------------------
-------------------------------------------------------------------------S------
-----------S---------------------------S--S--------SS-------------------SS------
---------------------SSS--S----------S-----------------------------------------S
S----------------------------SSS-----------S---S---S----------------------------
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------------------------S-------------------------------------------------------
----------------------------------------------------------------------S-------S-
----------S--------S---------S------------------------------------------S-------
-----------S--------------------S----------S-SSSSSS-----S--------S--S----------S
--SS------------------------------S-----------------------SSS-SS-S--SS--S---SSSS
SSSSSSS---S-----------------S-S-S--------S---------------------SS-----------S---
S---S----S---------SS----------------SS-----------SSS------------------------S--
------S-----SS--------SS-SSSSSSSS--S--S-------------------S-----------------SSSS
S----------------------------S-----------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------S----------------------SS------------S--------
---------------------------------SS-----------------------S---------------------
---S---S-----S--------------S------S-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_513
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-------------GTAGGATCGTGGCAGGGATG-----------------------------------------------
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>reverse_2462
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-------------------------------------------------------------AGGCATTTCGGAAGGGAGT
G-------------------------------------------------------------------------------
------------------------
