>input_sequence_77832
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---------------ATGGCGGCGAGAAGGCTCCTCGAGGAGGCGGCGGCGGCCGGCGTGCCGCAGGACTCGCTCAACTC
GGACCTGGTCCTCATCCTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTACTCGGCCTCGGCCTCGTGGCGCGGTGCGCGT
GCTCCCGCCGCTGGGCCCGCGCCGCGGACGCCGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCG
CTGCCCACCGTCAGGTACGCCGCCGACGGCGGCGAGGCGTCGGAGGCGGACGAGTGCGCCATCTGCCTCGCCGAGTTCGA
GGACGGCCAGCACATGCGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACGCGGCCTGCGTCGACGCCTGGCTGCGCTCGC
ACTCCTCCTGCCCGTCCTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGCCGCTGCGGCGCGCGG
CCCGGCGGCCTCGACGCGCTCCTCAAGGCGGTGCCGCTGTGCCGCTGA--------------------------------
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>chr6A_1_TraesCS6A01G261400
CACCCAGCGACCTAACGCCAAAAGTCAATAGTACGCAGGGGGGACGTGGAGGCGGGCAGTAGCTGAGTGACAGGTAGCAA
ACGGCACACCGAAAGTCTGTGCACCACA-CCGGAGTGCTGCTCGTGCGGCCCCAAACCAGGCCACCTGTCCCCTCCCTAA
CCCCGTTGCTACGAGATGGTTTTGGTTGCTCGGATAAGTCAAGGTTTTAACATTGTTTTTCTCTGTCTATAATGTAAAGT
ACGACTGATACAACGACTAATACGTCCGTCAATTGACTGTAGAAGTGGTGTATGACATAATTG-A---------------
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--------------------------------------------------------ACTCGGAATCTCGAGTGGCATATG
GACG---GCTTGGTTGGG---------TGATGCATAGGCCGATGGTTATCCTCCTTTTTTGAAAAATG------GGCATT
TTTTGAGTTTTTAGTGACATATATTTTAATTTCTTTACATGGATTGTTTACAATTT--TAAAAAATACTTCATAATTTGT
TCAAGTGCGTGATGCTATGTCTAATTTCCTCTACATGGATTACT--------ACATATACACCTTG-TTTCTCTACGACC
CTGACATCCTAGTTTCCTTGAGGTCTTGCTCATGTTGACCTAGTAGAAAGATTAAAAAAAGAAGTCACACTTAGATGAGT
GACTCTTGTTAAGACATGTGCTAAAAGAGAGCACTACGGTGGCCATATCAAGCCGTGTGGCAACACCGAGTGACGAAGTA
TTGGAACCCCAAAGGGCAAAGCAGGATCCACTTTCAAGTTCCAACTTCCAAACGAACCGCTCCACTGA----CCT-----
GCCTACGACCCGCCCGTGCTCATTCTTCGCATTTTCCTCAAGACCAAAAGCCGACGATCGCCTCCCCGCGCCATCTCTAT
ATAAGCCAGCGACCCAGCGCCTCCCATCACACACTTCCTCCACGC-TTCCTCCCCCGAGCTACGACGACGACCATCGACT
AGCC-----------------------AGCCAGCTGCTCCTCCGCGCAACCCAGCGGCGAAGCTCGTGAGCTCAGCTCTC
TCCCGCTGCCCGGACATGGCGGCGAGAAGGCTCCTCGAGGAGGCGGCGGCGGCCGGCGTGCCGCAGGACTCGCTCAACTC
GGACCTGGTCCTCATCCTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTACTCGGCCTCGGCCTCGTGGCGCGGTGCGCGT
GCTCCCGCCGCTGGGCCCGCGCCGCGGACGCCGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCG
CTGCCCACCGTCAGGTACGCCGCCGACGGCGGCGAGGCGTCGGAGGCGGACGAGTGCGCCATCTGCCTCGCCGAGTTCGA
GGACGGCCAGCACATGCGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACGCGGCCTGCGTCGACGCCTGGCTGCGCTCGC
ACTCCTCCTGCCCGTCCTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGCCGCTGCGGCGCGCGG
CCCGGCGGCCTCGACGCGCTCCTCAAGGCGGTGCCGCTGTGCCGCTGACGTCGCTGTAGCTCCGCATTAGTGGCGTGCGC
ACTCTGGACGAAAGGCCAAGGGAAAAGTGTGTCGAGGGAAATTAGCCGGTGCATAAGCTC----ACCGGCTAGCTTCTTA
TTTACCTTTCTCTTGGCTTGGGGGCCTGCTGGGTGTTGATTCTTTCTAGGTGTGGCTACTCTGGAAATGGGAACCATTGA
GCATGAAGGCGTGTGTACATACATATTTGATGGGGGGATTTGTGATTGTAACCTATTTGTACATATGTGGAAGTTGCTAT
AAAAACATGCACTTGGCTTGAACTGGGAATGCGAAT------------------------------TTGGTTGTACTTTC
TGGTTGTGTCTCCCGGTTGGAACTAGGGAATTGGCATAAGAATTTGCT-AAAGACATGTATACTGAAACGGTCCGT--AG
TATAACTTTGGCGAAACTCGTGGATGAGCGTGCATGTGCATCACTGGGAGTGTCCTAGTTTTGCATCCAGATTTGTACTA
CACTGTAAAAAGGTGTTTTCTAATTTTTTTAGTGCTTGGAAATATCTTAAATGATAACTCTTATTCGTAATCCTATCTTT
TTATATATTTATTTTGCACCAAGAAAATCTGAAACAATTTATTCATAGCGCAGTACTC--GTGTTGTT--GACAGGTAAA
GTTTCAAGTTTAAATGTAATTTTGTTTAAGAAGAAAAGAAAAGA--TTTTTTTTAAAAGATGGGGGTTTCTCCCAGCCTC
AACTTTTATCAAAAGGTGAGGCAATAAACATTCAAACCGTTTCACAATGCTCGGCTACAACTAGAGTACTGCAACAGACA
AATTACAAACGCAAAGTGCCAACATAGCAACGGTCACACATAACACATCATCCACAACCTATGAATGCAACCTAGATAGC
AAACAAAAGGATCAACACTATCACATCCTAGCAGATTTTACGCAAACCAGTTGGTGTTGAGGCGAACAATGTACTTCTGT
TGATCATCCGTGGCATCCAATGGCAGGGTTAGGTCCAAGAGATCCTGAACG
>chr6B_1
CACCCAGCGACCTAACGCCAAAAGTCAATAGTACGCAGGGGA-ACGTGGAGGCGGGCAGTAGCTGAGTGACAGGTAGCAA
ACACCA-ACCGAAAGTCTGTGTACCACA-CCGGAGTGCTGCTCGTGCGGCCCCAAACAAGGCCACCTGTCCCCTCCCTAA
CCCCGTTGCTACAAGATGGGTTTCGTTGCTCGGATAAGTCAAGGTTTTAACATTGTTTT-------CTCTAGTATAAAGT
ACGACTATTACGACGACTAATACGTCCGTCAATTGACCGTAGAAGTGGTGCATGACATAATTGAA---------------
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--------------------------------------------------------ACTCGGAATCTTGAGTGGCATATG
GACG---GCTTGGTTGGG---------TGATGCAGAGGCCGATGGATGTCCTCCTTTTTTTTTCAAAAATGGACATTTTT
TTTTGAGCTTTTAGTGGGATATATTTTAATTTCTGTACATGGATTACTTACAATTTCAAAAGAAAAACTCTATATTTTGT
TTAAATGTATGATACCATGTCTAATTTCCTCTACATGGATTACTTTTACCACACATATACACCTTG-TTTCTCTACGACC
CTAACATCCTAGTTTCCTGGCGGCCTTGCTCATGTTGACCTAGTAGAAAGATTAAAAAAACAAGTCACACTTAGATGAGT
GACTCTTGTTAAGACATGTGCTGAAAGAGAGCACTACGGTGACCATATTAAGCCGTGTGGCAACACTGAGTGACGAAGTA
TTGGAACCC-AAAGGGCAAAGGAGGATCCACTTTCAAGTTCCAACTTCCAAACGAACCACTCCACTGA----CCTACTAG
GCCTACGACCCGCCCGTGCTCATTCTTCGCATTTTCCTCAAGACCAAAAGCCGACGATCGCCTCCCCCCACGATCTCTAT
ATAAGCCAGCGACCCAGCGCCTCCCATCACACACTTCTTCCACGC-TTCCTCCCCCGAGCTACGACGACGACTAGCCAGC
CAGCTACTCCTCCGCGCGCAAGCCACAAG---------------------CCAGCGGCGAAGCTCGTGAA--C-----TC
TCCCGGTGCCCAGACATGGCGGCAAGAAGGCTCCTCGAGGAGGCGGTCGCCGCCGGCGCGCAGCAGGACTCGCTCAACTC
GGACCTGGTCCTCATCCTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTCCTCGGCCTCGGCCTCGTGGCGCGGTGCGCGT
GCTCGCGCCGCTGGGCCAGGGCCGCAGA---CGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCC
CTGCCCACCGTCAGGTACGTCGCCGACGGCGGCGAGGCGTCGGAGTCGGACGAGTGCGCCATCTGCCTCGCCGAGTTCGA
GGACGGCCAGGACATGCGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACACGGCCTGCGTCGACGCCTGGCTGCGCTCGC
ACTCCTCGTGCCCGTCGTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGACGCTGCGGCGCGCGG
CCCGGCGGCCTCGACGCGCTCCTCAAGGCCGTGCCGCTGTGCCGCTGACGTCGCTGTAGCTCGGCATTAGTGGCGTGCGC
ACTCTGGACAAAAGGCCAAGGGAAAAGTGTGTCGAGGGAAATTAGCCGGTGCATAAGCTC----ATCGGTTAGCTTCTTA
TTTACCTTTCTCTTGGCTTGGGGGCCTGCTGGGTGTTGATTCTTTTTAGGTGTGGCTACTCTGGAAATGGGAACCATTGA
GCATGAAGGCGTGTGTACATACATAGTTGATGGGGGGATTTGTGATTGTAACCTATTTGTACATATGTGGAAGTTGCTAT
AAAAACATGCACTT-GCTTGAACTGGGAATGTGAAT------------------------------TTGGAACTA-----
--------------------------GGAAATGGCATAAGAATTTGCT-AAAGACATCTATACTGAAAACTGCCCGTGAG
TATAACTCTGGCGAAACTTGTGGACGC-----------------------------------------------------
---------------------------------GCTTGGAAATATCTTAAATGATAAATCTTATTTGTAACCCTATCTTT
TTATATATTTATTTTGCACCAAGAAAATCTGAAACAATTTATGCATAGCGCAGTACTC--GTGTGTTATCGACAGGTAAA
GTTTCAAGTTTAAATGTAATTTTGTTTAAGA--AAAAAAAGATA--TTTCTTTTAAAAGAAAGGGGTTTCCCCAAGCCTC
AACTTTTATCAAAAGGTGGTGCAATAAACATTCAAACCGTTTCACAACGCTCGGCTACAACTAGAGTACTGCAACATACA
AATTACAAACGCAAAGTGCCAACATAGCAACAGTCACACATAACACATCATCCACAAGGTATGAATGCAACCTAGATAGC
AAACAAAAGTATCAACACTATCACATCCTAGCAGATTTTACGCAAACTAGTTGGTGTTGAGGCGAACAATCTACTTATGT
TGATCATCCGTGACATCCAATGGCAGGGTTAGGTCCAAGAGATCCTGAACG
>chr6D_1
CACCCAGCGACCTAACGCCAAAAGTCAATAGTACGCAGGGGA-ACGTGGAGGCGGGCAGTAGCTGAGTGACAGGTAGCAA
ACGGCACACCGAAAGTCTGTGCACCACACCCGGAGTGCTGCTCCTGCGGCCCCAAACCAGGCCACCTGTCCCCTCCCTAA
CCCCGTTGCTGAGAGATGGGCTTGGCTGCTCGGATAAGTCAAGGTCTTAACATTGTTTT-------CTCTAGTATAAAGT
ACGACTATTACGACGACTAATAC--CCGTCAATTGACCGTAGAAGTGGTGCATCACATAATTGAAACTCAGAATCTCTTT
TTTTTTTCCGGCAATGCTACATCAACGGAGTCTTACGGGCCTTTTACAGGGTAAATTTGAGGTGGCCATCTATGATTGGA
CCAAATGGGGAGGGAGGGCCCCACCCCCTAAAAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAGCTGGAAGGTCCG
TGAATTCCCCCTAATGAGCCCGTTGATGTAGCATTTTTGCTTTTTTTTAGGATCGAACTCGGAATCTCAAGTGACATATG
GACGTTGGCTTCGTTGGGTGTGTCATATGATGTAGAGGCGGATGGTTATCCTTCTTTTC-GAAAAAGG------ATATTT
TTTTGAGCTTTTAATGGCATATA-TTTAATTTCTCTACATGGATTACTTATAATTT--AAAAAAATACTTTATAATTTGT
TCAAATGTATGATACTATGTCTAGTTTCCTCTACATGGAATACATTTA-------TATACACCTTATTTTCTATACGACC
ATGACATCCCAGTTTCCCGGCGGCCTTGCTCATGTTGACCTAGTAGAAAGATTTAATAAAGAAGTCACACTTAGATGAGT
GACTCTTGTTAAGACATGTGCTAAAAGAGAGCACTACGGTGACCATATTAAGCCGCGTGGCAACACTGAGTGACGAAGTA
TTGGAACCCCAAAGGGCAAAGGAGGATCCACTTTCAAGTTCCAACTTCCAAACGAACCACTCCACTGACCTGCCTACTAG
GCCTACGACCCGCCCGTGCTCATTCTTCGCATTTTCCTCAAGACCAAAAGCCGACGATCGCCTCCCCACACCATCTCTAT
ATAAGCCAGCGACCCGGCGCCTCCCATCACACACTTCTTCCACCCTTTCCTCCCTCGAGCTACGACGACGACTATCGACT
AGCT-----------------------AG---------------------CCAGCGGCGAAGCTCGTGAGCTC-----TC
TCCCGGTGCCCGGACATGGCGGCGAGAAGGCTCCTCGAGGAGGCGGTGGCCGCCGGCGCGCAGCAGGACTCGCTCAACTC
GGACCTGGTCCTCATCCTCGCCGGCCTGCTCTGCGCGCTGGTCTGCGTCCTCGGCCTCGGCCTCGTGGCGCGGTGCGCGT
GCTCGCGCCGCTGGGCGCGCCCCGCGGACGCCGCCCCGCCCGGCGCCAACAGGGGCGTCAAGAAGGAGGTGCTGCGCGCG
CTGCCCACCGTCAGGTACGCCGCCGACGGCGGCGAGGCGTCGGAGGCGGATGAGTGCGCCATCTGCCTCGCCGAGTTCGA
GGACGGCCAGCACATGCGGGTGCTGCCGCAGTGCAGCCACGCGTTCCACGCGGCCTGCGTCGACGCCTGGCTGCGCTCGC
ACTCCTCCTGCCCGTCCTGCCGGCGGGTGCTCGTCGCCGAGCTGCCGCGCGGCGAGCGGAGCGGACGCTGCGGCGCGCGG
CCCGGCGGCCTCGACGCGCTCCTCAAGGCGGTGCCGCTGTGCCGCTGACGTCGCTGTAGCTCGGCATTAGTGGCGTGCGC
ACTCTGGGCAAAAGGCCAAGGGAAAAGTGTGTTGAGGGAAATTAGCCGGTGCATAAGCTCATCCATCGGTTAGCTTCTTA
TTTACCTTTCTCTTGGTTTGGGGGCCTGCTGGGTGCTGATTCTTTTTAGGTGTGGCTACTCTGGAAATGGGAACCATTGA
GCATGAAGGCGTGTGTACATACATATTTGATGGGGGGATTTGTGATTGTAACCTATTTGTACATATGTGGAAGTTGCTAT
AAAAACATGCACTTAGCTTGAACTGGGAATGTGAATTTGGTGGTACTTTCTGCTTATTTCTCACGATTGGAACTA-----
--------------------------GGAAATGGCATAAGAATTTGCTGAAAGACATCTATACTGAAAACTGCCCGTGAG
TATAACTTTGGCGAAACTTGTGGACGC-----------------------------------------------------
---------------------------------GCTTGGAAATATCTTAAATGATAAATCTTATTTGTAATCCTATCTTT
TTATATATTTATTTTACACCAAGAAAATCTGAAACAATTTATGCATAGCGCAGTACTCGTGTGTTGTT--GACAGGTAAA
GTTTCAAGTTTAAATGTAATTTTGTTTAAGAAGAAAAGAAAAGATATTTCTTTTAAAAGAAAGGGGTTTC-CCCAGCCTC
AACTTTTATCAAAAGGTGAGGCAATAAACATTCAA-CCGTTTCACAACGCTCGGCTACAACTAGAGTACTGCAACAGACA
AATTACAAACGCAAAGTGCCAACATAGCAACAGTCACACATAACACATCATCCACAACCTATGAATGCAACCTAGATAGC
AAACAAAAGGATCAGCACTATCACACCCTAGCAGATTTTAAGCAAACTAGTTGGTGTTGAGGCGAACAATCTACTTATGT
TGATCATCCGTGGCATCCAATGGCAGGGTTAGGTCCAAGAGATCCTGAACG
>SNPs
-----------------------------------------SS-------------------------------------
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-------------------S---------------------------------------SSSSSSS--S--S-S------
------SS---S-------------------------S------------S-----------------------------
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----------------------------------S-------------------------------S-------SSSS--
-------S--------S-----------------S----------SS-----------S-----------S---------
----S--SS----S------------------------------------------------------------------
------------------S-S--S--------------------------------------------------------
-----------------------------------------S------S-----------------S-------------
---------------------S------------------------------------S---------------------
-------------------------------------------------------------------S-S----------
-------------------------------------S----------------------------------S-------
-----------------------------SSSSSSSSSSSSSSSSSSSSS-----------------------SSSSS--
-----S----------------------------------------S---S-------S--S------------------
------------------------------------------------S-------------------------------
----S---------------------------------------------------------------------------
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----------------------------------------------------------------S---------------
--------------------------------------------------------------S-----------------
---------S-------------------------------------------------------S---S----------
---------------------------------------------S----------------------------------
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--------------S----------------S--------------------------------------SSS--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS----S--------------------------S----------SSSS--SS----
------------------S-----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S-------S--------------
------------------------------------------S-------------------------------------
-------------------------------------------------S----------SS--------S---------
-----------------------------------------------S--------------------------------
-------------------------------S------------------------------------------------
-----------------------------------------------S----------------------S-----S---
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>forward_1169
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-----------------------------AGCACTACGGTGGCCATATC-------------------------------
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>reverse_2397
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----------------------------------------------------------------------------TTTC
TGGTTGTGTCTCCCGG----------------------------------------------------------------
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