>input_sequence_77829
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---------------------------------------------------------------------------ATGGC
GTTGCGG-------------------------------------------------------------------------
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-----------------------------------------------------CAGGCGCTGGGATGGTCAGACGGGGAG
GTGATGCGGCCGGAGTCCAAGCCCTGCTCCCGCCTGATGCGTCACACCGCGGGCATCTTCTCTGTGGGTGGCGCCCTCGC
TTCCTGGGTTCTCTGTCGCCTTCACTATGGTAGTATTTCTTTCTTCCGCCACATACTTTAACTTAG--TCCACTCACTCA
TCTTCAGGCATACATAGACGTATTTGTTTA--------------------------------------------------
----------------------TATGGGTAGTGTTTCGAGTGTTACTAACTGTCGAAAGCAAGCAACTCGGACTTTGAGA
ATATTTGAATT----AGCGAATCCTGCGGTGTATTGTATTCATCTCATCGGTCATATATATATATATATATATGCAGGTC
CGAGGATAACGGTCCCGAGGAGCGTGAGGTGGGCGTCCTGTGGAGCGATCTGCGTGAGCTCGGCGTCGGCCTCGCTGGTG
CGGCTCTTGAGCCCGGAGTGCGAGCCGCAGAACATAGCGGCTTACGACAGGCCCGAACACAAGCCTGCATAG--------
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>chr5D_1_TraesCS5D01G538400
TAGTTAAATTTTAAGTCAAAATTTAGCCTAAAATAAGAGGGGCCTAATAAACCCGGACGGAGGTAGTATTTGTAGAGAGT
ACATCAAATTTATAGAAGAAAAGTAATAAGTAAGATGAAAATGAATTTTGTGAGGTGGAAATATGTCACAGAGGACACAA
ATTAATCATTTTTTCCTGGGGCAGTCACAGTCTCACAGATTAACCACGTGTCTTCCCGAAACTACCCACGGAAGT-GGCC
CAAAATTACACGCAGCCTGCCCCTCCCAGACGCTCTCTGCCCTCGCTCCCCTTCCATCCTCGTCTTCCCCGCCGCCGCCC
AGATCCGGCGT------CCCTGGCCCCGGCGGCCCGCAGCTCGCGGCAGGCCGCCCGGTCGGTCTCTCCTCACTATCGAG
GCTCGGCCCGGCCCC-----GCTGGGCAGCTCCTCCCCGACGCCCTCCTGCAGGTAGGCGC--CCGCCCCCATTCCACCT
GATTGATTGTGCTAGCGCGATGCCACTTCCGGCGCATAGTGGCCACTGGAAACTGCC-ACTGCCAAGCGGAGTAGGACCG
CTTTTACCTTAGCCTCCATGGTTGCTACCGGTA------GAATCGCGAATCGCGGGTCAGACATGAATACTGTATCGAAA
GATTATATT-----------------------------------------------------------------------
---------------------------------------------------------------------TCTCTGAAACG
GAACATGG------------------------TCACTGTAGTCCAAATCGATTAGCTGCC--------GCTGAAGCTGAA
GCTGAATCCTCTCAGTTTTATGTGTTTAGC-AA-ATAGACGCATAACCATTGGTCGCTGAGAAATGCATAAAACTACTCC
ACGTACGAGTCTATCAACACTTACCCTATAAAACTTCTGCCACTATGAAAAATGCATACAAGTTACTCCCTCTATATCAA
AATATAAGGCGTTTTTTGATGCGGAGGGAGTATTTAACTAGCTAGCTGGAAACAATTTCAGGAAGCAAAGCCCTCCGACG
TCTCAACAGTTGTCCACTCGTGCAAACTAGCAGTTTCTTTTACCACCAGAAAGGAAAAGGGAGACACGGATCACGATGGC
GTTGCGG-------------------------------------------------------------------------
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-----------------------------------------------------CAGGCGCTGGGATGGTCAGACGGGGAG
GTGATGCGGCCGGAGTCCAAGCCCTGCTCCCGCCTGATGCGTCACACCGCGGGCATCTTCTCTGTGGGTGGCGCCCTCGC
TTCCTGGGTTCTCTGTCGCCTTCACTATGGTAGTATTTCTTTCTTCCGCCACATACTTTAACTTAG--TCCACTCACTCA
TCTTCAGGCATACATAGACGTATTTGTTTA--------------------------------------------------
----------------------TATGGGTAGTGTTTCGAGTGTTACTAACTGTCGAAAGCAAGCAACTCGGACTTTGAGA
ATATTTGAATT----AGCGAATCCTGCGGTGTATTGTATTCATCTCATCGGTCATATATATATATATATATATGCAGGTC
CGAGGATAACGGTCCCGAGGAGCGTGAGGTGGGCGTCCTGTGGAGCGATCTGCGTGAGCTCGGCGTCGGCCTCGCTGGTG
CGGCTCTTGAGCCCGGAGTGCGAGCCGCAGAACATAGCGGCTTACGACAGGCCCGAACACAAGCCTGCATAG---TGGTA
CATGTATCTTGGAGGCGAGGTTCTTGATGATCTATCCCAGGAGATGGAGACACATTTATCTGCCA-TTGTCGTGTGAGAG
AGGTTCATTTACGCATAACCTAGCTGCCCAGGAGTTCAATAATGTGTCATTTTTCCTGACCGTTGCTGCAGAGTTTTTTC
TTCTTCTGAAAGTGCCGTATTCAGTAACTCTGGTCTCAAGCAGAGTGCTCGCTCTTGCTCTGTTGGAAGTGATTTCTCAA
CTCCACAGTCTAACTGAAAGAGAAACCTAGTTGGGCAAAGGCAGTCTGGCGCCACCGCCTACTGGCCGACCGACGTTCGT
TGCGGCGGCACAGCAGCGTCGGAGTTAGTGGCATTGACGCGCGAAGAAGGGGCACGATCGAGGAAAACGGGTGGCTCGCT
GCTGTTTTGCTCATTACTACTGTACTCGTGATGGATCGACTCCATCACCTACTAGCTCGTTGTCGGTGTTAATGCATGGC
AACCGCTGATTAATGAGTATGCTCTTCAATTAATCCCTGCCGTACATGCTGGTCTAGTAGGGCACTCCGCAAATGATTCT
TCTCCCCACTGTTCTGTCACCGGCCTGCCCTGCACTCTAGTTCAGCTGAGAAGAGGATCGACACTACAACTCAGGCCTCA
GGGCAGCAGCCTGTCAGATTACTGTATCGTACACTGTGGATGCCATGTTTCTTCTTCAATGTGAGGACCGATCGATTTTG
CTTCTTTCTTTCTTCCTTTCAAGAGGCCTCTGGACTAAACCCGGACATGGACAGCCCGGCCTGAAGAGCTGGGCCGGGCC
GGGCTTGATGTTTGGGCCAGGCTCGGGCCTTGTTTTGCAGCCCGAAAGATAGTTTGGGCCAGGCTCGGGCCTTGTTTTGC
AGCCCGAAAGATAGTTTGGGCCAGGCTTGGGCTTCAGTTTTTCTGTTTTTCAGGCTGGGCTTTCGGGCTTTGAGCCGGGC
TTGCACGTGCGCACACTTAAAAACAGCGTTCGGGTT
>chr4A_215
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------------------------------------------------------CCCAAAATTACACTCGGAAGCCGGCC
CAAAATTACACGCAGCCTGCCCCTCCCACACGCTCTCTGCCCTCGCTCCCCTTCCATCCTCGTCTTCCCCACCGCCGCCC
AGATCCGGCGT------CCCCGGTCCCGGTGGCCCGCAGCTCACGGCAGGCCGCCCAGCCTGTCTCTCCTCCCAATCGAA
GCTCGGCCCCGCCCC-----GCCGGGCAGCTCCTCCACGACGCCCTCCTGCAGGTAGGCGC--CCGCCCACATTCCACCT
GATTGATTGTGCTA--GCGATGCCACTTCCGGCGCATAGTGGCCACTGGAAACTGCC-ATTGCCAAGCGGAGTAGGGC--
CTCTTACCTTAGTCTCCATGGTTGCTACCGCCTACCGGTGAATCGCTAACCGTGGGTCAGAGATGAATACTGCATCGAAA
GATTGTATTGATGTATGTGTGCCTAGTTAGTTATTTTTGTA-GTACTACTCAGTGTGGTAAAATGTACAGCCCACTTTTG
TTGAAAGACAACATGAATTGCAGTGGTGC-----------ACACATTTCTTACCTCACTCGTTTATCTTTCTCTGAAACA
TGTATTATTTCTGGATATCAGTTTGTAGCGCATCACTGTAGTTCAAATCGATTAGCTGCC--------GCTGAAGCTGAA
------TCCTCTCAGTTTTAGATGATTACCAAATATAGACGCGTAACCATTGATCGCTGAGAAACCAGAG---------C
ACGTACGAGTCTATCAGAACTTACCCTGTAAAACATT-AAATTTCTGCCAGTAGGGAGTAG-------------------
-------------------------------ATTTAACTAGCTAACTGGAAACAATTTCAGGAAGTGCTG----------
----------------------------------------------CAAAAAACAAAAGGAAGACAAGGATCACGATGGC
GTTATGTCAGAGCATCTCCAACAGGTGCGGCAAAAGGCGTGGCCGCGCGGTAAAATTTGGTTTTAGCGCGCGCCGACTGG
TTCCGCGCTCCAGCGGTGGCGGGAACTTACCGCGGGCGGGAAGCGTTTGCGCGCGCGCAGGAGAAAGCGGCACGCGGCGC
GGTAGATTTGGCGCGCCGCTTCGCGCGCGCCTATAAAACCACGCGCCCTCCCCTCACAACCTCGCCACCTCGCCGCTCCA
CCGCTTTCCGCGCCACCATCGCGCCACCATGCCGCCGCGTCGCCGTGGTTCTTCAGGCTACCGCGGCGTCCGCGAGCGCC
CCAACGGCTGGTACTCCGCCGAGATCCGGTCCGGCGACGTCCGGCTCGGCCTCGGGTCGTTCCGGAGCGCGTACGACGCG
GCGGCGTGGCGCTTGGATAGGCCCCGGTCGCAGATGAACTTCCGGGACGTCTTCACGCGCGAGCAGGCGCAGCGCGTCGC
CCCTCCGCCGCGTCTCATCACCAACATGGACCGTGCCGACCACGCTCGGCGCTGCCGCCGCCTCCTCATCGCCGAGGAGG
ACGAGCGAGCCATGGCGGAGTGGCGCCGTCGCCACCTGGAGGACGTCGCCGACGAGCGTGCCTACTGGGCGGAGAGGACG
GCAAGGCGCCGCGCGGAGTGGGCGGACCGGCGTCGGCGGAAGGCATTGGCGAATGCGCAGTGCGATATCGTTGAAGCATG
TGGGAGGTCGATCTTCACGTCAAACGATGAACGTTGGGACGACATATGGCTCGATACCTCGGACAACACCGACGAGGATG
ATGATGGTGATGATGGTAGCGACTTGGAGTAGTTTCTATCTATGTATGCCGTAGTAGTTTCTATCTAGTTGCACCGTAGG
TCTATCTATCTATGCTTTCGAACTATCTATCTAGTTGCACCCATGTAAAATACCTTTGTATCGTTTTTTTATCTATGCAA
TTTATCGTTTTTTATTATCTTATTATCTATGCTTCCGAAAATGTTAAATGAGCGCGCGTGCTGCATTTTTGCGCGCTGTT
GGAACGGCGCGCGCGCGCTGCATCTTGCGCGGCTGCTGGAGCCAGTGCTGCGCGCCACGCCAAACCAGACGATAGACGCA
CGGCAAAGCTGTCTTTTGCGCGCGGCGCGTTCGGCGCCTGTTGAAGATGCTCTCAGGCACTGGGATGGTCAGACGGGGAG
GTGATGCGGCCGGAGTCGAAGCCCTGCTCCCTCCTGATGCGTCACACCGCGGGCATCTTCTCTGTCGGTGGCGCCCTCGC
TTCCTGGGTGCTCTGTCGCCTTCACTACGGTAGTATTTCTTTCTTCCGCCAAATACTTTAACTTATACTCTACTTACTCA
TCTTCAGGCATGCATACGCGTATTTGTTTGTTGATATTGATACTATCGTCCGTGCTCTTTC--------------TGTAT
CTGTCTCTGTATACATGCTTTATATGAGCACTGTTTTGAGTGTTACTAGTCGTCAAAATCAAGCAACTTAAACCTTAAAA
GTATTTGTGTT----TACTAACCCAGCAGTGTATG----------CATCGGTC----------ATATATATATGCAGGTC
CGAGGATAACAGTCCCGAGGAGCCTGAAGTGGGCGTCCTGTGGAGCGATCTGCACAAGCTCGGCATCGGCCTCGCTGGTG
CGGCTCTTGAGCCCGGAGTGCGAGCCGCAGAACATAGCGGCTTACGACAGGCCCGAACACAAGCCTGCATAG---TGGTA
GTATAC-CTTGGAGGCGAGGTTCTTGATGATCTATCCCAGGAGATGGAGACACATTTATCAGCAC-TTGTCGAGTGAGAG
AGGTTCATCTACCCATATCGTAGCTGCC----------------------------------------------------
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>chr5B_274
CTCGC---------------------------------------------------------------------------
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----------------------------------------CCTCGCTCCCTC-CCATCCTCATCTTCCTCGCCGCCGCCC
AGATCCGGCGTCCCCGGCCCCGGTCCCGGTGGCCCGCAGCTCGCGGCAGGCCGCCCGGTCGGTCTCTCCTCCCAATCGAA
GCTCGGCCCCGCCCCACCCCGCCGGGCAGCTCCTCCCCGACGCCCTCCTGCAGGTAGGCGCGCCCGCCCCCATTCCACCT
GATTGATTGTGCTA--GCGATGCCACTTCCGGCGCATAGTGGCCACTGGAAAGTGGAAACTGCCAAGCAGAGTAGGAC--
CTCTTACCTTGGCCTCCATGGTTGCTACCGGTA------GAATCGCCAACCATGGGTCAGACATGAATACTGTGTCGAAA
GATTGTATTGATGTATGTGTGCCTAGTTAGTTAGTTAGTTTTGTACTACTCGATGTGGTAAAATGTACAGCCGACTTTTG
TTGGAAGACAACCTGCATTGCAGTGGTGTTCCTCTGATGTACACAGTTCTTAGCTCACTCGTTTATCTTTCTCTGAAACA
AGTGTTATTTCTGGATATCGGTTTGTAGCGCATCACTGTAGTTCAGATCAATTAGCTGCCGCAGTGCCGCTGAAGCTGAA
------TCCTCTCGGTTTTATGTGATTGCCAAA-ATAGACGCGTAACCATTGATCGCTGAGAAACCAGAG---------C
ACGTACGAGCCTGTCAAAATTTACCCTATAAAACATTGAAACTTCTGCCCGTAGGGAGTACT------------------
-----------------------------GTATTTAACTAGCTAGCTGGAAACAATTTCAGGAAGTATTGC---------
----------------------------------------------CAAAAGACAAAAGGGAGACACGGATCACGATGGC
GTTACGA-------------------------------------------------------------------------
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-----------------------------------------------------CAGGCACTGGGATGGTCTGACGGGGAG
GTGATGCGGCCAGAGTCGAAGACCTGCTCCCGCCTGATGCGTCACACCGCGGGCATCTTCTCCGTCGGTGGCGCCCTCGC
TTCCTGGGTTCTCTGTCGCCTTCACTATGGTAGTATTTCTT----CCACCACATACTTTACTTT-G--TCTACTCACTCA
TGTTCAGACATGCATACACCTATTTGTTCG------TTGATACTGCCGCCTGTGCTGTGAATCTTGTTCTTTTCATGTCT
CTGTATCTATCTACATGATTTGTATGAATACAGTATCGAGTGTTACTGGCCGTCGAAAGCAAGCGACTCGAACCTTGAAA
TTACTTGGATTTAATAGCTAACCCTGCAGTGTATTGTACTCATCTGATCGGTC----------ATATATATATGCAGGTC
CGAGGATAACGGTCCCGAGGAGCCTGAGGTGGGCATCCTGTGGAGCGATCTGCACGAGCTTGGCGTCGGCCTCGCTGGTG
CGGCTCTTGAGCCCGGAGTGCGAGCCGCAGAACATAGCGGCTTACGACAGGCCCGAACACAAGCCTGCATAGCAGTGGTA
CATGTATCTTGGAGGCGAGGTTCTTGATGATCTATCCCAGGAGATGGAGACTCGTTCATCTGCACCTTGTCGTGTGAGAG
AGGTTCATTTACCCATATCGTAGCTGCCCTGGA-----------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S---S-S------S-----
----------------------------S---------------------------------------------------
--------------------S--S-----S-----------------------------------------S-S-----S
---------S------------S---------------------------------------------------------
--------------SS--------------------------------------------------------------SS
--S-------------------------------------------S--S--S---------------------------
----S---------------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSSSS-SS----------------------------------S-------------------------------------
SSSSSS------------------S---S-------------S---------S-----------SSSSSSSSSSSSSSS-
-----------------S----------------S-SSSSSSS-S--SS-SSS-SSSSS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S-SS--SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---SS--------------------------
---S--S-------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
-----------------S-----------------------------------------------S--------------
----------------------------------------------------------------------S---------
-----------S----S------------S--------------------------------------------------
--------------------------S---S-----------------S-S-------------------S--S----S-
S------S----------S--S-----S----------S--------------SSSSSSSSSS-----------------
-----------------------S-----------------------------SS-------------------------
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---------------------------------------------------------------SS---------------
------------S----S-S---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_67
-----------------------------------------------TAAACCCGGACGGAGGTAGT-------------
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>reverse_3487
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----------------------------------------------TGCTGGTCTAGTAGGGCACT--------------
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