>input_sequence_77814
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--------------ATGGCGGCTTGGGGAAGAGGCAATGCAGCGGGCAGTAAGGCGATTGTCGCCGGCGCCGCGTTCCTG
TGCGTGGCCGCGATGCTCCTGGCGGCCACCCCCGCGGCCGAGGCGGGGGCGACAACGTACCTTGTCGGCAACGCCGCCGG
GTGGACGCGCAACGTCGACTACGGCGGGTGGCTGGCCGGCAAGACCTTCCGCGCCGGCGACGTGCTCGGTACGTACCTCT
CTCTGCAATGCACGTGCGAGTA--TAGCCTTGGACAACTTATCCCGATCTGACCATGCCGCGTGCGTATGTATGCATGCG
CAGTGTTCAAGTACAACAGCACGTTCCACGACGTGGCGTGGGTGAGCAAGGGCGGGTACAAGAAGTGCATCGTGTCGCCC
AAGGGGTACGCCCCGGTGTACCGCAACGGCTACGACGCGGTGGCGCTGCCCAGGGGCACGCACTACTTCATCTGCGGCGT
GCCGGGACACTGCAGCGCCGGCATGAAGCTCGCCGTCACCGTCTACTGA-------------------------------
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>chr4B_1_TraesCS4B01G116300
TTTTATTATACCCAACTTGGATGCTCATCATTCTAGGATCAATTTTATAACCATAGCAAATACCATGCTGTTCTAAAAGA
CCATTAATATAATATAAGTGAAGCATTAGAGATCAACAATTTCTACAAAATCAAACCACCGTCGTGTTCTAAAGAGTATA
AGTGAAGCACTAGAGCAAAACTATCTTGCTCAAAAGATATAAGTGAAGCATCATGTGTCTCACACTTCAATTCGATGTGA
TGGGTGAATCGGACTCGTCCGAGCCTCCTCATATCTGTTTTAGATATGGTCTAAATATGAGGGGTGTCGGTCAGCCCTG-
ACATATAGGATCAATACAAGGGGTGCGGGCGAGCCGAATTTTTGAGATC-GAACAAGGACCGTCTACGACGTGGCACGAA
CGTGCCATACGTGTTCCATTTTCTTTGATCTCCCGACGATGGCTCCGTGGATCGT--------G-ATCTGGAATATATAG
ACTTGGTGGCAGCTCGACAACTTCCAAGGCATCATGGTCAACTTGAGCT----CTAGCTAGCTAGCGACGACACACAAGT
CTGACTTGGGGAGCAATTACTGCACACGGCAGGAACTGT--GTGCCCAACAGTCGTACAAGAAACCAAAAACCCCGCGGA
CAGGTTTCGTGAACTTCGCCAAACATTGCATTAGCAAATGCGGTTCCCATCGATCACATGCGCTCCTCTCTCTTATCCAA
AC-----------------------------------TTAATCGTCAGAAACG--GTACGTACCGGCCGAATAAGCTCGT
CAATAGTCAAAGGATGGATGGGCTGCACAACGTGTCATCACGTGCGATGGATAACGCGTTCACTCCTCCCCAATAGCAGT
TCCAGTTCTCAACTTTCAAACAAGCAGTTCAAGTTCGTCGTCCGCAACGCCACGGACGCGCTATAAAAGGCAACACGGCG
AGGGCGCCATTCCTGCGAGTTCAGTCTTACCAAGCAGCAAAAGAGGGCGCAGTAGCTGGTCTCTCTAACGACAAAGCTTG
TGCCCGCGGCAACGATGGCGGCTTGGGGAAGAGGCAATGCAGCGGGCAGTAAGGCGATTGTCGCCGGCGCCGCGTTCCTG
TGCGTGGCCGCGATGCTCCTGGCGGCCACCCCCGCGGCCGAGGCGGGGGCGACAACGTACCTTGTCGGCAACGCCGCCGG
GTGGACGCGCAACGTCGACTACGGCGGGTGGCTGGCCGGCAAGACCTTCCGCGCCGGCGACGTGCTCGGTACGTACCTCT
CTCTGCAATGCACGTGCGAGTA--TAGCCTTGGACAACTTATCCCGATCTGACCATGCCGCGTGCGTATGTATGCATGCG
CAGTGTTCAAGTACAACAGCACGTTCCACGACGTGGCGTGGGTGAGCAAGGGCGGGTACAAGAAGTGCATCGTGTCGCCC
AAGGGGTACGCCCCGGTGTACCGCAACGGCTACGACGCGGTGGCGCTGCCCAGGGGCACGCACTACTTCATCTGCGGCGT
GCCGGGACACTGCAGCGCCGGCATGAAGCTCGCCGTCACCGTCTACTGATCATTCGATCGTCGCCCACCTCCGGACTGCA
TCGAGTGGCGTTGACCTTGACGTCCTACGTCGC----------GCTGGCGTGTGTAATTTGTGTGTGCTTGCATTGCGAT
TTGTGAGTTTGGCGTATGCATCACATGGAATGAGTAAACCTGGTGTTTTCTCTCGTAATACGCCGATGCTTAAACTTCTC
TCGCGTGAGCTTGTCGTCTTTCAAATTTCCAAAGATACTAAGCTCACTTAAAAGGAAGCTCTTTGGTGCATCCATGATCG
TACCACACCCGGTTTTCTCCTCCGGAACATGCGCGTGGTGATTAGTATTTTGGTCGCCATTTCTTTATACAAACTCCAAT
TTAGGCATTGTTTGTATGAAGAAACGACGACCAAAATACTTAGATCTAAAGTTTTTATGTACCTTCTCCGATTTGAACCA
AAATACAAGTTTTTATGTGCCTTCTCAAAATTAAATTTGATATGAAAACAAATACTTGGATCCTCCTACTTAATTACTTA
TCAATTTATTTTTATTTTTTTGTTTCTG-------TTTTTTTTTCTCCTAAAAGATGAGTACTCGCATACTTATATTCAT
AGGATAGTTAGAGAGGCTTCCACACCTTTAGTGATTGACTACTTAGTAGTGGGAGAGCGGTCCTATAAAATATTATTTGG
GGTTCGACCAAGCAAGGAGTGAGGAGCTCTCAATATTTTTGGTGCCCCGTGCGTCCCTTTGAAATGTAATATTTCAACCA
GTCCTTCCATTTTCTCCCACAATATTGAACAAGATTAGTTGTTCATGACATACTAGTCGTTTACTAT-------------
-------------------------------------------------------------------------TTTACTT
GTTACAATGAAAACAAAGCGTGCTCAATGCTTATGCGAGAAAACAAAATTGGTCAAGTTGAGTCCTAACTTTGA--AACA
AAGTATGATGTGACCCATACTTTATGACTTGAGAGTTCCACCTATACTTTCTA----CTTAGCTAGAATATTTTTGGCTA
ATCTCTATACTCACTTTTTTAAG--CTAACCTAACCAAAA
>chr4D_217
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--------------------------------------------------------GTCTCACACTTCAGTTCGACGTGG
TGGATGTGTCAGACGCGTCTAAACCTCCCAATATCCATTTTAGATATGGTTTAAATATAAAAAGTGTCGGCCAGCCCTGT
ACGTATAGGACCGATACAAGGGGTGCGGCTGAGCCGAGTTTTTGAGACCGGAACATGGACCGTCTACGACGT-GCACGAA
CGTGCCATACGAGTTCCA-TTTCTTTGATCCCCCGACGATGGCTCCGTGGATCGTGGATCGTGG-ATCTGGAATATATA-
--TTGGTGGCAGCTCGACAACTTCCAAGGCATCATGGTCAACTTGATCTCTACCTAGCTAGCTAGCGACGACACACAAGT
CTGACTTGCGGAGCAATTACTGCACTCGGCAGGAACTGTCGGTGCCCAAGA---GTACAAGAAACCAAAAACCCCGCAGA
CAGGTTTCTTGAACTCCGCCAAACATTGCATTGGCAGACGCAATGCTCATCGATCACATGCGCTCCTCTGTCTTATCCAA
ACTAAGAAGATTCATCAATTCATTTCCTGGTCCAATCTTAATCGTCAGAAATTGTGTACGTACCGGCCGAATAAGCTCGT
CAATAGTCAAAGGATGGATGCTCTGCACAACGTGTCATCACGTGCGATGGATAATGCGTTCGCTCCTCCCCAATAGCAGT
TCCAGTTCTCAACTTTCAAACAAGCAGTTCGATTTCCACGTCCACAACGCTACGGACGCGCTATAAAAGGCAACACGGCG
AGGGCGCCATTCCTGCGAGCTCAGTCTTAACAAGCAGCAAGAGAGAGTGCAGTACCTGGTCTCTCTAACGACAA-GCTTG
TGCGCGCGGCAACGATGGCGGCTTGGGGAAGAGGCAATGCAGCTGGCAGTAAGGCGCTTGTCGCCGGCGCCGCGTTCCTG
TGCATGGCCGCGGTGCTCCTGGCGGCCACCCCTGCCGCCGAGGCGGGGGCGACGACGTACCTTGTCGGCGACGCCGCCGG
GTGGACGCGCAACGTCGACTACGGCGGGTGGCTGGCCGGCAAGATCTTCCGCGCCGGCGACGTGCTCGGTACGTACCTCT
G--TGCAATGCACGTGCGAGCGAGTAGCCTTGGACGACTTATCCCGATCTGACCATGCCGCGTGCGTATGTATGCATGCG
CAGTGTTCAAGTACAACAGCACGTTCCACGACGTGGCGTGGGTGAGCAAGGGCGGGTACAAGAAGTGCGTCGTGTCGCCC
AAGGGGTACGCCCCGGTGTACCGCAACGGCTACGACGCGGTCGCGCTGCCCAGGGGCACGCACTACTTCATCTGCGGCGT
GCCGGGCCACTGCAGCGCCGGCATGAAGCTCGCCGTCACCGTCTACTGATGATTCGATCGTCGCCCACCTCCGGAGTGCA
TCGAGTGGCGTTGACTTGGTGGTCGCTTATTGTCCTGCGTCCGGCTGGCGTGTGTAATTTGTGTGTGCTTGCATTGCGAT
TTGTGAGTTCGGCGTATGCATCACATGGAATCAGTAAACCAGATGTTTTCTCTCGTAATACGCCGATGCTTAAACTTCTC
TCGCGTGAGCTTGTCGTCTTTCAAATTTCTAAAGATACTAAGCTCACTTAAAAGGAAGCTCTTTGGTGCATCCATGATCA
TACCACGCCCTGTTTTCTCCTCCGGAACATGCGCGTGGTGATTAGTATTTTGGTCGCCATTTCTGCATACAAACTCCAAC
TTAGGCATTGTTTGTATGAAGAAATGACGACCAAAAGACTTGAATCTAAAGTTTCTATGTACCTTCTCCGATTTGGACCA
CAGTACAAGTTTTTATGTGCCTTCTCAAAATTAAATTTAGTATGAAAACAAATACTTGGATCCTCCTACTTAATTACAT-
TCAATTTATTTTTGTTTTTTTGTTTTTGGTTCATTTTTTTGTTCCTCCTAAAAGATGAGTACTCGCATACTTATGCTAAT
AGGATAGCTAGAGAGGCTTCCACACATTTAGTGATTGACTATTTAGTGGTGGGAGAGCGGTCCTATAAAATATTATTTGG
GGTTCCACCGAACAAGGAGTGAGGAGCTCTCAATATTTTTGGTGCTCGGCGCGTCCCTTTGAAATGTAATATTTTGACTA
GTCTTTTCATTTTCTCCCACAATATTGAACAAGATTAGCTGCTTATGACATACTAGTCGTTTACTATCCCCTCTGTAAAC
TAATATCAAAGCGTTTAGATCACTAAAGTACTAGTCTAAACACTCTTATATTAGTTTACCGAGGGAGTACTATTTTACTT
GTTACGATGAAAACAAAGCATGCTCAATGCTTATGGGAGAAAACAAAAATGGTCAAGTTGAATGCTAACTTTGG--AACA
AAGTATCATGTGACCCATGCTTTATGACTTGAGAGTTCCACCTATACTTTCTAATTTCTTAGCTAGAATATTTTTGGCTA
ATCTTTATACTCACTTTTTTAAAATCTAACCTAACCAAAA
>chr4A_347
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--------------------------GGCTGAGCCGAGTTTTTGAGAGCGGAACATGGACCATCTACGACGTAGTACGAA
CGTGCCATAAGTGTTCCA-TTTCTTTGATCCCCCGACGATGGCTCCGTGGATCGT--------GGATCTGGAATATATAT
ACTTGGTGGCAGCTCGACAACTTCCAAGGCATCATGGTCAACTTGAGCTCTA-CTAGCTAGCTAGAGACGACACACAAGT
CTGACTTGCGGAGCAATTGCTGCACACGGCAGGAACTGTCGGTGCCCAACAGTCGTACAAGAAACCGAAAACCCCGCAGA
CAGGTTTCGTGAACTCCGCCAAACATTGCATTGGCAAACGCAGTGCCCATCGATCACATGCGCTCCTCTGTCTTATCCAA
ACTAACAAG---------TTCATTTCCTGGTCCAATCTTAATCGTGAGAAACTGTGTACGTAGTGGCCGAATAAGCTCGT
CAATAGTCAAAGGATGGATGCGCTGCACAACGTGTCATCACGTGCGATGGATAATGCGTTCACTCCTCCCCAATGGCAGT
TCCAGTTCTCAACTTTCAAACAAGCAGTTCAAGTTCCACGTCCACAACGCCACGGACGCGCTATAAAAGGCAACACGGCG
AGGGCGCCATTCCTGCGAGCTCAGTCTTACCAAGCAGCAAGAGAGAGTGCAGTAGCTGGTCTCTCTAACGACAA-GCTTG
TGCGAGCGGCAACGATGGCGGCTTCGGGAAGAGGCAATGCAGCGGGCAGTAAGGCGCTTGTCGCCGGCGCCGCGTTCCTG
TGCATGGCCGCGGTGCTCCTGGCGGCCACCCCTGCTGCCGAGGCGGGGGCGACGACGTACCTTGTCGGCGACGCCGCCGG
GTGGACGCGCAACGTCGACTACGGCGGGTGGCTGGCCGGCAAGACCTTCCGCGCCGGCGACGTGCTCGGTACGTACCTCT
CTCTGCAATGCACGTGCGAGTA--TAGCCTTGGACGACTTATCCCGATCTGACCATGCCGCGTGCGTATGTATGCATGCG
CAGTGTTCAAGTACAACAGCACGTTCCACGACGTGGCGTGGGTGAGCAAGGGTGGGTACAAGAAGTGCACCGTGTCGCCC
AAGGGGTTCGCCCCGGTGTACCGCAACGGCTACGACGCGGTGACGCTGCCCAGGGGCACGCACTACTTCATCTGCGGCGT
GCCGGGCCACTGCAGCGCCGGCATGAAGCTCGCCGTCACCGTGTACTGATGATTCCGTCGTCCTCCACATCCGGAGTGCA
TCGAGTGGCGTTGACCTTGAAGTCGCTTATCGTCCTGCGTCCGGCTAGCGTGTGTAATTTGTGTGTGCTTGCATTGGGAT
TTGTGAGTTTGGCGTATGCATCACGTGGAATGAGTAAACCAGATGTTTTCTCTCGTAGTACGCCGATGCTTAAACTTCT-
TCGCGTGAGCTTGTCGTCTTTCAAATTTCTAAAGATACTAAGCTCATTTAAAAGGAAGTCT-------------------
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>chr4A_1743
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------------------------------------------------TAAAAGAAAGCTCTTTCGTGCATCCATGATCA
CACCACACCCGGTTTTCTCCTCTGGAACATGTGCGTGGTGATTAGTATTTTGGTTGTTATTTCTTCGTACAAACCCCAAT
TTAGGCA-TGTTTGTATGAAGAAATGGCTACCAAAATACTTGGATCTAAAGTTTCTATGTACCTTCTCCGTTTTGGACCA
AAATACAAGTTTCTACGTACCTTCCCAAAATAATTGGGC--ATGAAAACAAATACTTGGATCCTCCTACTTGATTACTTA
TCAATTTATTTTTGTTCTTCTGTTTTTGGCTCATTTTTTTGTTCCTACTGAAAGATGAGTACTCGCATACTTATGCTAAT
ATGATAACTAGAGAGGCTTCCACATCTTTAATGATTGACCACTAGC-GGTGGGAGAGCGGTCCTATAAAATATTATTTGG
GGTTCGATCGAACAAGGAGTGAGGGGCTCTCATTATTTTTGGTGCTCCGCGCGTCCCTTTGAAATGTAATATTTTGACCA
GTGCTTTCATTTCCTCCCACAATATTGAACAAGATTAGTTGCTCATGACATACCAGTCGTTTACTAT-------------
-------------------------------------------------------------------------TTTACTT
GTTACGATGAAAACTAAGCATGCTCAAAGCTTATGCGAGAAAACAAAAATGATCAAGTTGAGTGCTAACTTTGAAAAACA
AAGTATGATGTGATCCATGCTTTATGATTTGAGAGTTCCACCTATACTTTCTACTTTCTTAGCTAGAAT-TTTTTGGCTA
ATCTTTATGCTCACTTTTTTAAG--CTAACCTGACCAAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-----S---S
---S--SS--S---S----SS-S-----SS-----SS-------------S-------S-SSS-------S---------
--S-------S-S---------------SS-------S---------S-------S----------------S-------
------------------S-----------S------------------------------------------------S
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--------S--------------------------------------------------------------------S--
---------------S----------------S-----S--S--S------------------------S----------
----------------------------------------------------S---------------------------
--------------------S---------------------------------S-------------------------
------------------------------------SS-----S------------------------------------
-------------------S--------------------S----S-S--------------------------S-----
---S----------------------------------------------------S-----------------------
---S--------S-------------------S--S-----------------S---------------S----------
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-----------------------------------S--------------------------------------------
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------S-------------------------------------------S------------------------S----
--------------------S---SSSSS---S-----------------------------------------------
----------------------------------------S-S-------------------------------------
-----------------------------S-------------------------------------------------S
-----------------------------------------------------------------S--------------
------------------------S----------------S------------S--------------------S----
--------------------------------------SS----------------------------------------
-------------S-----------S--------------S--S------------------------------SS-S--
-------S---------------------------------------S--------------------------------
---------S-S---------------------------------S---S------------------------SS----
------S----------------------------------S--------------------------------------
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-----S-------------S----------------------------S--------------S----------------
------------------S-------------------------------------------------------------
----S-----------------------------------
>forward_638
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----------------------------------------------------------AAGAAACCAAAAACCCCGCG--
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>reverse_2252
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-----------GCAAGGAGTGAGGAGCTCTC-------------------------------------------------
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