>input_sequence_77796
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------------------------------------------ATGAGGGTCCACCCGGCCCCGCGGAAGCGCACCATCGC
CGTGCAGCGCTGCGCCGCGGCCGCCCTAAGCGCAGCGGGCGGCGCCAAGAAGCTGCGGCGCCTCTCGCACATCTTCGCGA
AGGTGCTCGAGCTCCCTTTCGCCGCCGACGCCGACGTCGCCGTCGAGGAGGACGCAGCGGAGCTCCGCTTCGTCGCCGCC
ACGGAAGGCTTCTCCCCAGGCGGCGCCTGCGCCCACGCCCTCGAGATCCACCCTGGCGTCACCAAGGTCGTCGTACGGGA
CCTGTCCACCGGCATCGGCGCCGATGACCGCACCGCTACCTTCGAGCTCGATCGGTGGCGGTTCCGTCTCCCGCCTTGCA
CGCGCCCCACCATGGCCACAGCAACCTACGCCGAGGGCGAGCTCATCGTCACCGTGCCCAAGGGTGCCGTTCCTGACGAG
GGCGATGGCAACGCTGACGGAGCCGCCATCCTAGGAGGCTCCGGGGCCGAGAGGGTCCTCGTGTTTGTACAGTAA-----
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>chr2D_1_TraesCS2D01G246400
TAAACTTCTGTCATTTTAGCAACCCATCATCTAATAACTACTCTACAATGCATTCCCTTAGGCCCAATAGTTATGCGTTG
ACAGCGATGGCAGCGAGCGGCACACTAGAGTGCTACAACCATAGAGTGTCGATGAGCAGGAGTTGCAACCGGTCATCGAC
GGATCTGCAACCGAAACCAACGACCAAGGGGAGGTTCTTCGGCAAGCATCGCCGCCTGAGAAAGCGCGTGCCCTGCCGTT
GTGAGCGAGCGCGCCATCAACGACAACTTTTTTTTTCAATGACGGAGAAAGAAGACGATGAAATAGGGCATAAATTGGAT
GGCTACATGCTGCGTTGCACGATCAACCCGACGTCCAGCGCATCCCATTTGATTCTATGCCAAAGACAGTCATCCCCTCC
GTTCAAAATAAAGAAGATTCATTCTCTGGTATTGTTCGTATGGTCCACGTGATATCTTAATTACTCTATCTGTAAAGAAA
TATAAAAGCGTTTAGATCACTATTTTATACTCTCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAGTGACTA
CATACGGAGCAAAATGAGTGAATCTACACTATAAAATATTACACTATAAAATATGTTTATATACATCCGTATGTGGTAGT
CTATTTGAAATCTCTAAAAAGACAAATATTTAGGAACGAAGAGAGTAGTAATTTATATGTTTTTATGTTTGTTTACGGAG
GAAGTACTTTGCAATGAACATGTGGGTTTTTTTTCCTTAAGAAAAGGAAATCGGAAACTATTATGACATCAACTCCCACA
CCTCTCCGTCTCCATCTCGCCTCGTCTTCCTCCTAAATCCCCCAACCCACGCACAGCCACGGAGCTCCGCATCGACAGCA
CGTAATTTAAAGCACCTCTGGCCTCTTCCCAGCGCCCGATCTCCTCCCCGCGCGCGCCTA-GGTTAGTGTTTGGAGCC-C
CCTCCTCCCGTCGTCCTCCTGCCGCAGCCGCATCTGCTCGCCATGAGGGTCCACCCGGCCCCGCGGAAGCGCACCATCGC
CGTGCAGCGCTGCGCCGCGGCCGCCCTAAGCGCAGCGGGCGGCGCCAAGAAGCTGCGGCGCCTCTCGCACATCTTCGCGA
AGGTGCTCGAGCTCCCTTTCGCCGCCGACGCCGACGTCGCCGTCGAGGAGGACGCAGCGGAGCTCCGCTTCGTCGCCGCC
ACGGAAGGCTTCTCCCCAGGCGGCGCCTGCGCCCACGCCCTCGAGATCCACCCTGGCGTCACCAAGGTCGTCGTACGGGA
CCTGTCCACCGGCATCGGCGCCGATGACCGCACCGCTACCTTCGAGCTCGATCGGTGGCGGTTCCGTCTCCCGCCTTGCA
CGCGCCCCACCATGGCCACAGCAACCTACGCCGAGGGCGAGCTCATCGTCACCGTGCCCAAGGGTGCCGTTCCTGACGAG
GGCGATGGCAACGCTGACGGAGCCGCCATCCTAGGAGGCTCCGGGGCCGAGAGGGTCCTCGTGTTTGTACAGTAACTTTA
TGCCGTAACACCACTTTTGCTCACCCGCATCGTTTTTAATATTTATGTTGCGAGATAATCATATATTCATA--------T
GGTAACAACAGTGCAGTAAGAATAAGAAATGATGTATATGGATCACTGTTTGCTGTGAATTATGCCTAGTGACATCTAAT
CTGCTCGTGTAATTCTAGTTATTTCGTTGTGGGGCACAAATAGTTAGTTTTGATGCCGGCATATGTAGTAGAGATGATGA
GTCGAGTAATCAAGCATGAGCATCCCGTCTCGTGTACTCTTAGCCTGATTAGATATGTAAACATTTTAATATGAGATGGT
TATATCTGAGCCAGCCTATCTGGTTTGTTGAGAAAT----------------GCCATGTGTTGATGAGGTGTTGAGAATC
TATTCTTGAATTATTAGGGTTCTCTAGGTATGCCAATGGTTCCAGATAGTGGTAGGGTCTGTTGCTGATTGTAGTTTGCG
TGTACCTTTGAAATTTGGTGGTTTCCATTTTACCTTTAAAATTTGGTGGTTTCCATTTACCTTTTTGACAGACAGACTAC
TGTGATTTAGTATCATCTGGCTGGAGCTGTTGAGCAATTATGAAATCTTGTGGCACTCAAAGACTGGCTACTGTGATCGA
GTATCATCTAGCAAAGCTATTGAGCAATTCTATAACCTTGGGGCACTTGTGGTTCATAGATATTTTGATTATGCTGTGTT
AAATCAGTGGAAATGGTTGTGTCGCATTCAGGGGTTAAGAGGCAATGCTTTAATTAAGTTTTCATATGTCTTGTGTTTTT
CTCTGTATCTTAAGCTGGCCTCAATCCATGTATGTGTCGTTTACAAAATGCCAGGTTGGTGAGAGGCCTATCAATCAATC
GCCAATCCCTTCAAAGGCCCCATCCAGTTTGTTGTGCATATGTAACAGTACGAACTTGCTTGTTTTTCATACAAAGTGCT
ATAATTGCACATATATAC--AGTCTTGGATTTTCTGTTCTCAGTTTTATTCTAGTTGATGT
>chr2B_686
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---------------------------------------------TAGTAATCTAAATGCTCTTATATTTGTTTACGGAG
TGAGTACTTTGCAATGAACATGTGGTTTTCTTTTCATTAA-AAAAGGAAATCGGAAACTATTATGACATCAGTTCCCACA
CCTCTCCGTTTCCATCTCGCCTCGTCTTCGTCCCATATACCCCAACCCACGCACAGCCACGGAGCTCCGCATCGACAGCG
CGAAATCTCTA---------GCCTCTTCCCAGCGCCCGATCTCCTCCCCGCGCGCGCCTAGGGTTTGTGTTTCGAGACTC
CCTCCTCCCGTCGTCCTCCTGCCGCAGCCGCATCTGCTCGCCATGAGGGTCCACCCGGCCCCGCGGAAGCGCACCATCGC
CGTGCAGCGCTGCGCCGCGGCCGCCCTAAGCGCAGTGGGCGGCGCCAAGAAGCTGCGGCGCCTCCCGCACATCTTCGCGA
AGGTGCTCGAGCTCCCTTTCGGCGCCGACGCCGACGTCGCCGTCGAGGAGGACGCAGCGGAGCTCCGCTTCGTCGCCGCC
ACGGAAGGCTTCTCCCCAGGCGGCGCCTGCGCCCACGCCCTCGAGATCCACCCTGGTGTCACCAAGGTTGTCGTGCGGGA
CCTGTCCACCGGCATCGGCGCCGATGACCGCGCCGCTACCTTCGAGCTCGATCGGTGGCGGTTCCGTCTCCCGCCTTGCA
CGCGCCCCACCATGGCCACAGCCACCTACGCCGAGGGCGAGCTCATCGTCACCGTGCCCAAAGGTGCCGTTCCTGACGAG
GGCGATGGCAACGGTGGCGGAGCCGCCATTCTTGGAGGCTCTGGGGCCGAGAGGGTCCTCGTGTTTGTACAGTAACTTTA
TGCCGTAACACCACTTCTGCTCACCCGCATCGTTTTTAATATTTATGTTGTGAGATAATCATATATTCATATGGTAAATT
GGTAACAACAGTGCAGTAAGAATAAGAAATAATGTATATGGATCACTGTTTGCTGTGAATTATGCGTAGTGACATCTAAT
CTGCTCGTGCAATTCTAGTGATTTCGTTGTGGGGCACAAATAGTTAGTTTTGATGCCGGCATATGTAGTAGAGATGATGA
GTCGAGTAATCAAGCATGAGCATCCCGTCTCGTGTACTCTTAGCCTGATTAGGTATGTAA-CATTTTAATTTGAGATGGT
TATATCTGAGCCAGCCTATCTGGTTTGTTGAGAAATTCAGAAACTGCTTGATGCCATGTGTTGATGAGGTGTTGAGAATC
TATTTTTGAATTA-TAGGGTTCTCTAGGTATGCCAATGGTTCCAGATAGTGGTAGGGTCTGTTGCCGATTGTAGTTTGCG
TGTACCTTTGAAAT----------------------------TTAGTGGTTTCCATTTACCTTTTTGAAAGACAAACTAC
TGTGATTTAGTATCATCTTGCTGGAGCTATTGAGCAATTATGAAATCTTGTGGCACTCAAAGACTGGCTACTGTTATCGA
GTATCATCTAGCAAAGCTATTGAGCAATTCTATAACCTTGGGGTACTTGTGGTTAATAGATACTTTGATTATGCTGTGTT
AAATCAGTGGAAATGGTTGTGTCGCATTCAGGGGTCAAGAGGCAATGCTTTAATTAAGTTTTCATATGTCTTGTGTTTTT
CTCTGTATCTTAAGCTGGCCTCAATCCATGTATGTGTCGTTTTCAAAATGTCAGATTGGTGAGAGGCCTATCAATCAATC
GCCAATCCCTTCAAAGGCCCCATCCGTAG----------------------GAACTTGCTTGTTTTTCATACAAAGTGCT
ATAATTGCACATATATGCATAGTCTTGGATTTTCTATTCTCAGTTTTATTCTAGTT-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S---S-S----S-------------
SS-----------------------S---S-----S----S------------------------------SS-------
---------S-------------------S---S-S--S----------------------------------------S
--S---S-SS-SSSSSSSSS---------------------------------------------S------S---S---
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-----------------------------------S----------------------------S---------------
---------------------S----------------------------------------------------------
--------------------------------------------------------S-----------S-----S-----
-------------------------------S------------------------------------------------
----------------------S--------------------------------------S------------------
-------------S--S------------S--S--------S--------------------------------------
----------------S---------------------------------S-----------------------------
------------------------------S----------------------------------S--------------
---------S---------S------------------------------------------------------------
----------------------------------------------------S-------S---------S---------
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----S--------S---------------------------------------------------S--------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------------------S-----S-----
------------------S---------S---------------------------------------------S-----
-------------------------------------------S----------S-------S-----------------
-----------------------------------S--------------------------------------------
------------------------------------------S-------S---S-------------------------
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
----------------S------------------S--------------------SSSSS
>forward_337
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-----------------------------------------------------------------------------GAT
GGCTACATGCTGCGTTG---------------------------------------------------------------
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>reverse_1257
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--------------------------------------------------------CGTCACCAAGGTCGTCGTAC----
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>forward_836
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----------------TCGCCTCGTCTTCCTCCTAA--------------------------------------------
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>reverse_2371
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--------------------------------------------------CCAGGTTGGTGAGAGGCCTA----------
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