>input_sequence_77786
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-------------------------------------------------------------------------------A
TGGAAAACCACCACGACTCCCTCGCCGACGGGCGGTGCGTCGACGGCCCGGCCTTGTGGACCGAAATTCGCCACCGGCTG
TCCCGGGATTCCATACTGAGGCACGAGGAGGCGCGGACGCGAGCCGCGGAGGCCAAGGCCGCCCTAAACGGGGATCACTG
GGAGTGGGACGACGACGGTGCATATGCCGTCATCGATCCGGCCTCCTTGAAGGCCATGGTGGCCATGGAGACGCCGAAGG
TGGGCGAGACGAGGGAGCAGGGCTGCGCGGTGTGCCTCGAGGGTTTCGTGGCCGGCGGCAAGAAGCTGAGGACGATGCCC
TGTTCCCACTCCTTCCACCAGAGATGCATCTTCGACTTGCTCCTCCGTAGCCGATTCTGCCCGGTCTGCCGTTCCGAGAT
GCCCCCTAGGTCCGCCGACGTGTCGGAG------CCGGAGCCGGTGGCTTAGAAAGCCGCTACTACATCTGAACAAGTTG
GCAGCAACTGAACTGAAGAATGTCCATCGATTGAGTGA------------------------------------------
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>chr1D_1_TraesCS1D01G099500
CACGACCTGTTTATAACTGGGCCGCCGCCTTGGACCGTGACATGCTAGCAGGGTTAAGGGGCCCTGCCGGCCAACTTGGC
CAGGTTTGGTTGACCGGGGGAAGACTTGTATGAGATCTCACATTAGGTGAGATTGTGAGATCAACCCTAAAAATTCATAT
TTAGACATTTCGGAAAAATCTGAAATTATTTAACAACATTCATGTGGGGTATGTCTACAACTCCAAAAAAAATCAGCTCA
AAACTCGAA-----------------------------------------------------------------------
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-----------------------------------------GTATATTTGGAGATTCAAAAAAGACAAATTCAGATGTGA
ATAGTGGCAGCTTTGGGTGAATAGTACTTTGACA----------------------------------------------
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---------------------------------------CTATTCATGTCCAGTCTTGTCTTTTTTATTTCTATTAATGG
CCCTGTTTGAATCATGGGGTTAGAGCTAGTTTGGGTTAGTTGGAGGCTTAAATAACCCAAAAGTATCCAAACAGGTAGGG
TTAGAGTGGGTTAGTTCCATCTAACCCAACTATCCCGGTGGAGAGGTGCTTATTTGAGTTAGAGTGGGTTAGAAAATAAC
TCTAACTCTAACTGTGTTAGAGTATCCAAACAGGGCCAATGTAGGTTGAATTAGGAGTTGAAACTTTTTAAGGTTGAACA
TCAACCGTTGATGTGTGTCTACAATTTCTTTAAGAATGTTTGAACGTGTAGATTTTTTTTTAAAATTC-GATCACATTGA
TCTCGCCTAATGTGAGACCCTCTCCCCCGACGGCCCCCTGGTTGACCGCCCGTGCCAGATGCTCCCCAAAACACCTTCCC
GTGACAAAAAACCTTTCCGTGGCAAAATTACTCCCCCTCCTCTCGTCCGACTGCGGCAGCGGGCACCGACTCCGACCTTC
GCCGCCGCCGCCTTGCCCGTCTCTTCATCGGAGCCGGCCTCCCGGAATAGGTAGATTGATTCGCGCGTGCTAGATCCAGG
CCACGTCGTCATCAAGAGGCTGACTGTCTCTCGACTAGTAGGGTTTGAAAGGGCAGAGCAGCAGGGGCAGATTC-GGCAA
TGGAAAACCACCACGACTCCCTCGCCGACGGGCGGTGCGTCGACGGCCCGGCCTTGTGGACCGAAATTCGCCACCGGCTG
TCCCGGGATTCCATACTGAGGCACGAGGAGGCGCGGACGCGAGCCGCGGAGGCCAAGGCCGCCCTAAACGGGGATCACTG
GGAGTGGGACGACGACGGTGCATATGCCGTCATCGATCCGGCCTCCTTGAAGGCCATGGTGGCCATGGAGACGCCGAAGG
TGGGCGAGACGAGGGAGCAGGGCTGCGCGGTGTGCCTCGAGGGTTTCGTGGCCGGCGGCAAGAAGCTGAGGACGATGCCC
TGTTCCCACTCCTTCCACCAGAGATGCATCTTCGACTTGCTCCTCCGTAGCCGATTCTGCCCGGTCTGCCGTTCCGAGAT
GCCCCCTAGGTCCGCCGACGTGTCGGAG------CCGGAGCCGGTGGCTTAGAAAGCCGCTACTACATCTGAACAAGTTG
GCAGCAACTGAACTGAAGAATGTCCATCGATTGAGTGAGTCACTCTTCTTGCAGCCGTCCCTGTTTTATGTTCATCTGAA
TATCTGATTACCGGTCACAAGCGGTGTAATTTTGTTCGAAATTACTCTCCTCAATGTTCATCATAACTACCACTTCGTAT
CAATCAAACATTCTAATGGTGGAAACAATCTCAGTGGTGCTTGCCCTGGCTCCTCATCTATACACGAATGGATGCTATTG
ATTGGTTGAGTTTACAAAGTTCAGTATTCTTCTGGTAAATTGATCTAGTCATAATGTATTGTAGTAATGCCTTGTTCAAA
TATATCTGGAACAATCATCTC--------------------------------------------AATACCTAGAGGAGT
TTATCGAGTACGGGGCTGGACAGAT-CT----------------------------------------------------
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-------------------------------------------------TTAAGCATCTGTGGAAGGCCAGGATTCCTCT
TAAGATTAACGGAAATGATAAGTACCTGATGTCAGAGACGTGCATATGGCAAATCGAACATTTTTTATGGCAACATTAGT
TGACACGCATGTCAATTTTCTGGCAAACAACATAACACGGGCGGAATTGCCATGCTTACCAACTAAACTTGCCATCCTTG
TGTCAACTTAATCTTGCCACAAAAAATGTTCGTTTTGCCATGGTCACCTACCTAACGTTCGCTAGTTATCGACGTCCAAG
ATCAAAATGTGGTTATGGCTGATCTGGCACAATGGCATTGCTACAAAAGATAATATGGAAAAATGCAAACGAACTGCTGA
TTACACTTGTTGATTTTGTGATGAAAATAAGAGCATCAATCATTTATTTTTTATTTGTTCTGCTGTTGT-TTATATGTGG
AGCATTATTTGCCGTGCTACGGGTGTTTTCTTTATAGACGTGTGTGTTTTACACGATACTTCTGGTGGGCAGCGAAGAAC
ATTCTGTTAGGCCCTAACTATCATGTGGTGGGCA-------------------TTGTGCAAAACTCGTAATAGAGCCCTG
CTTTGATAA--TAAGTTGATATCAGCCCCTGTTGAGCTGATTTGTTACATGTGTGCTTTCCTTCGTGTTTGGGCAGGAAT
GCAGAA
>chr5A_97
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----------------GGGGAAGACTTGTATGAGATCTCACATTAGGTAAGATCCTGGGATCAATCCAAAAAATTCATAT
TTAGACATTTTGGAAAAATCTGAAATTATTTGACAACACCCATGTGAGGTATGTCTACAACTCCAAAAAAATTCAGCTCA
AAACTCGATGCATATTTAGAAATTCAAAAAAGGCAAATTCAGATGTGAATAGTGGCAGCTTTGGGTGAATAGTACTTTGA
CGCTATTCACGTCTAGTTTTCTCTTTTTTTGTTTCTATTAATGTAAGTAGAATTAGGAGCTAAAATTTTTGAGGTTGAAC
ATCAACCATTGATGTGTGTCTACAATTTTTTTTGAGAATGTTTGAACATCTAGATTTTTAAAAAAAAAATCGATCGCATT
GATCTCACCTAATGTGAGATCTCACACAAGTCTCAAGACTTGTGTGAGATCCCACATTAGGTGTGATCATGAGATCAATC
TCAAAAATTCATATTTAGACATTTCGGAAAAATCTGAAATTATTTTACAACATCAATGTGAGGTATGTCTACAAATCCAA
AAAAAATGAGCTCAAAACTCGATGTATATTTAGAGATTCAGAAAAGACAAATTCAGATGTGAATAGTGGCAGCTTTGGAT
GAATAGTATTTTGACGCTATTCACGTCCAGTTTTGTCTTTTTTGTTTCTATTAATGTAAGTTGAATTAGGAGCTAAAAGT
TTTTGAGGTTGAACATCAAACCGTTGATGTGTGTCTAATTTTTTTTTTTTGAGAATGTTTGAAGATGTAGATTTTTTTTA
AAAAAAATTGATCACATTGATCTCACCTAATGTGAGATCTCACACAAGTCTCAAGACTTATATGAGATCTCACATTAGGT
GAGATCGTGAGATCAATCCCAAAAATTCATACTTAGACATTCCGGAAAAATCTGAAATTATTTGACAACATCCATGTGAG
GTAAGTCTACAACTCCAAAAAAATTCAGCTCAAAACTTGATGTATATTTAGAGATTCAAAAAAGACAAATTCAGATGTGA
ATAGTGGCAGCTTTGGGTGAATAGTACTTTGACGCTATTGACGACTAGTTTTCTCTTTTTTGTTTCGATTAATGTAAGTT
GAATGAGGAGCTAAAACTTTTTGAGGTTGAACATCAACCGTTGATGTGTGTCTACAAACTTTTTGAGAATGTTTGAACAT
CTAGGATTTTTTAAGAAAATCGATCACATTGATCTCACCTAATGTGAGATATCACACAAGTCTCAAGACTTGTATGAGAT
CTCACATTAGGTGAGATCATGAGATCAATCTAAAAAACTCATATTTAGACATTTTGGAAAAATCTGAAATTATTTGACAA
CATCAATGTGAGGTATGTCTACAACTCAAAAAAAAATCAGCTCAAAACTCGATGTTTATTTAGAGATTGACAAATTCAAA
TGTGAATAGTGACAGCTTTGGGTGAATAGTACTTTGACGCTATTCACGTCCAGTTTTGTCTTTTTTGTTTCTATTAATG-
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-----------------------------------------TAAGTTGAATTAGGAGCTAAAAGTTTTTGAGGTTGAACA
TCAACCGTTGATGTGTGTCTACAATTTTTTTGAGAATGTTTGAAGATGCAGATTTGTTTTAAAAAAATTGATCACATTGA
TATCACCTAATGTGAGA---------------------------------------------------------------
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>chr1B_791
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----------------------------TACTCCCCCTCCTCTCATCGGACTGCGGCAGCGGGCACCGACTCCGACCTTC
GCC---------TTGCCCGCCTCTTGATCGGAGCCGGACTGCCGGAGTCGGTAGATTGACTCGCATGTGCTAGATCGAGG
CCGCGTCCTCGTCAAAAGGCTGATTGTCTCTCGAC---TAGGGTTTGAAAGGGTAGAGCAGCAGGGCAGA--TC-GGCAA
TGGAAAATCACCACGACTCCCTCGCCGACGGGCGGGACGTCGAGGGCCCAGCCTTGTGGACTGAAATTCGCCACCGGCTG
TCCCAGGATTTCATACTGAGGCACGAGGAGGCGCGGACGCGAGCCGCGGAGGCCAAGGCCGCCCTAAACGGGGATCACTG
GGAGTGGGACGACGACGGTGCATATGCCGTCATCGATCCGGCCTCCTTGAAGGCCATGGTGGCCATGGAGACGCCGGAGG
TGGGCGAGACGAGGGAGCAGGGCTGCGCGGTGTGCCTCGAGGGTTTCGTGGCCGGTGGCAAGAAGCTGAGGATGATGCCC
TGTTCCCACTCCTTCCACCAGAGATGCATCTTCGACTTGCTCCTCCGTAGCCGATTCTGCCCGGTCTGCCGTTTCGAGAT
GCCCCCCCGGTCGGCCGACG------AG------CCGGAGCCGGTGGCTGAGAAAGCCGCTACTACATCTGAACAAGTTG
GCAGCAACTGAACTGAAGAATGTCCATCGATTGAGTAAGTCACTCTGCTTGCAGCCGTCGCTGTTTTATGTTCGTCTGAA
TATATGATTACCGATCACGAGTGGTGTAATTTTGTTCGAAATTACTCTCCTCAATGTTCATCAAAACTACCACTTCGT--
--ATCAAACCTTCTAATGGTT---------TCAGTGGTGCTTGCCCTGGCGCCTCACATATACACGAATTGATGCTATTG
ATTGGTTGAGTTTACAAAGTTTCTTATTCTTCTGCTAAATTGA-------------TATCGCTGTAATGCCTTATTCAAA
TATATCTGGAACAATCATCTGACTACCTAGAGGAGTTTATCTGACTACCTAGAGGAGTTTATCTGACTACCTAGAGGAGT
TTGTCGAGTCTGGGGCTGGACATGTCCT----------------------------------------------------
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-------------------------------------------------TTAAGCATCTATGGAAGGCCAGGATTCCTTT
TATGATTAAAG---------------------------------------------------------------------
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-------TGCGGTTATATCTGATCCGGCACAATGCCATTGCTACGAAAGATAATATGGAAAAACGCAGATGGACTGGTGA
TTACACTTGTCGATTTTGTGATGAAAATGAGAGCATCCATCATTTATTCTTTACTTGTTCTGCTGCTGTTTTATATGTGG
AGCACCATTTGCCGTGCTCTGGGTGTTT--TTTATAGACGTGTGTGTTTTACACAATACTT---------AGCGAAGAAC
ATTCCGTTGGGCCTTAACTTTCATGTGTGGGCATTGCAGCCTTTTGCTGGGTGTTGTGGAAAACTCGTAATAGAGCCTGC
TTTTGATAATATAAGTTGATATCAGCCCCTGTTGAGCTGATCTGTTACATGCGATCTTTCCTTCGTGTTTGGACAGGAAT
GCAGAA
>chr1A_791
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----------------------------TACTCCCCCTCCTCTCATCCGACTGCGGCCGTGGGCACCGACTCCGACCTTC
GCCGCCGCCGCCTGGCCCGTCTCTTGATCGGAGCCGGACTGACGGAATCGGTAGATTGATTCGCGTGTGCTAGATCCAGG
CCGCGTCTTCATCAAAAGGCCGATTGTCCCCCGAC---TAGGGTTTGAAAGGGTAGAGCAGCAGGGTCAGATTCAGGCAA
TGGAAAACCACCACGACTCCCTCGCCGACGGGCGGGGCGTCGA-------------------------------CGGCTG
TCCCGGGATTTCATACTGAGGCACGAGGAGGCGCGGATGCGAGCCGCGGAGGCCAAGGCCGCGCTAAACAGGGATCACTG
GGAGTGGGACGACGACGGTGCATATGCCGTCATCGATCCGGCCTCCTTGAAGGCCATGGTGGCCATGGAGACGCCGAAGG
TGGGCGAGACGAGGGAGCAGGGCTGCGCGGTGTGCCTCGAGGGTTTCGTGGCCGGTGGCAAGAAGCTGAGGATGATGCCC
TGTTCCCACTCCTTCCACCAGAGATGCATCTTCGACCTGCTCCTCCGTAGCCGATTCTGCCCGGTCTGCCGTTTCGAGAT
GCCCCCCAGGTCCGCCGACG------AGCCGGAGCCGGAGCCGGTGGCTGAGAAAACCGCTACTACATCTGAACGAGTTG
GCAGCAACTGAGCTGAAGAATGTCCATCGATTGAGTGAGTCACTCTGCTTGCAGCCGTCCCTGTTTTATGTTCGTCTGAA
TATCTGATTACCGATCACAAGCAGTGTAATTTTGTTCAAAATTACTCTCCTCAATGTTTATCAAAACTACCACTTCCT--
--ATCATAACTTCTAATGGTGGAAACAATCTCAGTGGTGCTTGCCCTGGCTCCTCACCTATACAGGAATCGATGCTATTG
ATTTGTTGAGTTTACAAAGTTCATCATTCTTTCGGTAAATTTATCTAGTCATATTGTATCGCTGTAGTGCCTTATTCAAA
TATATTC-----------------------------------------------------ATCTGAATACTTAGAGGAGT
TTATCGAGTCCGGGGCTGGACAGATCTTTAGGCCTCATTTCACAGGGGAAGTTTTGCAGCCCCGGAGTGGAGGGGATCTG
AGGGGATTTGGTTAATCCCTCTCTTTCAAACGAGATTTGCCTGTTCTTTATGCGTGTGTCCATCCGTACTCATGCATACA
TGGCTTGATTTGATTAGAACAAAATAAGGCCCGACCCCACCCCTTAAAATCAGGGGGAGGGAGGGGGATGATTAGATTAG
AAAGGGAAAAGGAAAAAAGACAGCCGTAGGATGAAGTGGGAGCACAGATAGAAGCATGGAGAGCGAGCAGGCAAGCCGGG
TCCCTCTCTTTCACCCAATCCCCTCAATTCCCCACTAATCCCTTCCTCCTCATAAACCCCTTTATTTGGTTAAATCTCCT
ACAACAGCAGCAAAGCAAGCGTCCAATTTCATGGGTGCCTTGGGGGGCTTCTGTACCACATGGATTGAGGGGGATTCGTG
GGGAACGGAGAGGATTGGCCTGCTCAATCCCTACGTGTCAAATGGGCTGATAAATATTTCTGGGGATTTTGAACACTGCG
AGGATATTCTTCTCCAAACCTCTCCAAACCTCCTTCACCAAACAAGGCCTTAAGCATATGTGAAAGACCAAGATTCCTCT
TAAGATTAACGGAAATGATAAGTATCTGACATCAGGTAGGTGCACATGGCAAATCAAACAA-TTTTATGGCAACATTAGT
TGACGCGTGTGGCAATTTTCTGGCAAACAACATAATACGGGCGAAATTGCCATGC-------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--------------------------------S----SS--S------S--S------------
----------S--------------------S------SS------S------------------------S--------
--------S-----------------------------------------------------------------------
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-------------------------------------------------S------------------------------
---------------------------------S----------------------------------------------
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----------------------------------------------S-------S-----------S------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S-S---S-----S----------
---------------------------S---S------------SS--S------S----S----SSS------------
-S--S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----------------------------------
-------------------------S-----------S--S-------S----------------S--------------
--S----S-------S-------S-----------SSS---------------S------------S-------------
-----------------------------------S-------S-----S-----------S------------------
----------S---------------------------------------------------------------------
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-------------------------------------------------------S----------------S-------
-------------------------------------------------------------------------S------
------S-------------SSSSSS-----------------------S------------------------------
----------------------------------------------S--------------------------S------
-------------S-------------------------------------------------S--------------SS
SS-------S----------------------------------------------S------------S----------
-----------------------S-----------------------------S-----S-SS----------S------
--------------------S-----------------------------------------------------------
---------S----------------------------------------------------------------------
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------------------------S----SS----SS-S-----S----------S----SS------------------
----S--SS--S-----------------------S-------S-----------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--S------SS------S---------S---------S------------------S---S-S-S----S---
----------S-----------------S--------S----------S----S-----------S--------------
----SS------------SS--------SS------------------------S------SSSSSSSSS----------
----S---S----S-----S-------SS--SSS------------------------S------------------SSS
S----------------------------------------S---------S-SS-----------------S-------
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>forward_93
-------------------------------------------------------------------------ACTTGGC
CAGGTTTGGTTGA-------------------------------------------------------------------
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>reverse_3950
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-----------------------------TCGTTTTGCCATGGTCACCT-------------------------------
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