>input_sequence_77782
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---------------------------------------ATGGGCAATAGCTTGAGGTGCTGCCTGGCTTGCGTGCTCCC
CTGCGGCGCGCTGGACCTGATCAGGATCGTCCACCTCAGCGGCCGCGTCGAGGAGTACGGCAGGCCGGTGGCCGCAGGCG
AGATCCTCTCCGCCAACCCGAACCACGTGCTGAGCAAGCCGTGCTCGCAGGGCGTCGTGCGGAGGATACTCATCGTCTCC
CCGGAGTCCGAGCTGGAGCGCGGCCAGATATACTTTCTCATCCCGGCGTCCTCGGTGCCGGCTGAGAGGAAGAAGAAGAC
CGGCTCCAGCGCTGGCTCGCAAGGCGCCGCTGGCGTCGCGCCGTCAAGGACGGCAAACCCTGGCCACGGCGGCAAGGCGC
GCAGCCACGTTAAGAGCAAGCCGTCGTCAGGTCACGGCAGTGGCCGTGACGTGCAGTCCGAGAAGAGGTCGTTGCACCGG
CGGCGAGTGAGCACCGGTGGCCGGACCGCCGTGTGGAGGCCACACCTCGAGTGCATCGTGGAGGGCACTTGA--------
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>chr1B_1_TraesCS1B01G131700
ATGTATGGACAATGCAAACAATCTGTCTAAACACTATCTCGTAGTTGTTCTCTCTTCTCCTAATTTTGAAGAAACAATAA
TTTGCAGGGGATTTTTTTTTGTGTGGGGGTAATTTTGAAAAGTATCATTCCAGTGCTAGCTGTTTCTTCTAACGAATTAT
CATGTTA---AATAGCTTTGAGCAAATTGTTTTTTTTTTGCAGTATCTTTGAGCAATTGCCACAAAATAGGAGTGTCCTG
CAAGTTGCAACCAACTTTGCCTTTTCTATTTCTTCGTAATTCTCTGTGTATTTTCTGCGGATCTCATTT-----------
---------------------------------GTCTATACAATAGCATACTATGCAAAACCCATACCCCAAGA------
-ATCAACACCCATCTACACTGGCTGGTCTACCAACACATGCATTGT--TGTGCACCATTCGTTGTGCACAACCAAAACAC
AGCAAGGCAGCGTGGACATGAATGTGCTGTGGGAATAATTGAGGCAAAGCTAGATGGGAGGGAGAGAACATACATAGCT-
G-AAAATAAACAAATTGCTCCCATAAATTCCACTGAACGTGCAT--GGGCTGTAGTTCTAGTAGTGTTCTACTGCCTC-G
TCCTTTGATTAGTACTCCCTCTGTAAACTAAAATAGTGATCTAAACGCTTTTATATTAGTTTACGGAGGGAGTACATTAG
ATAAGGTTAAAATAGCATCCACATGAGACCATCTTTTGATACCCCCTTGCCCCTAAACTATACACTTCCACACCAAACCA
TGCACATCATCTTTATTCCCCAATTTTCATTTCCTCTTTTGCCCTCCAGTGAAGCAACGCAAAGACCATGACAAAAATAA
ATAAATTTGTATGCTACCTTGGACATATGAAGGAAGGCCACTATATAAGCATTGGTCACCCCACGATGCGAAGGGAGGGA
AAGGAAAAGGACTTGCAAGCCAGAGACATC---CTCCTCGACCTCAAAGCAGAGAGAGGTGGCAATCGACCAGCTAGGCC
AGTTCTGAACCTAGAGAGA---------------ATACAATGGGCAATAGCTTGAGGTGCTGCCTGGCTTGCGTGCTCCC
CTGCGGCGCGCTGGACCTGATCAGGATCGTCCACCTCAGCGGCCGCGTCGAGGAGTACGGCAGGCCGGTGGCCGCAGGCG
AGATCCTCTCCGCCAACCCGAACCACGTGCTGAGCAAGCCGTGCTCGCAGGGCGTCGTGCGGAGGATACTCATCGTCTCC
CCGGAGTCCGAGCTGGAGCGCGGCCAGATATACTTTCTCATCCCGGCGTCCTCGGTGCCGGCTGAGAGGAAGAAGAAGAC
CGGCTCCAGCGCTGGCTCGCAAGGCGCCGCTGGCGTCGCGCCGTCAAGGACGGCAAACCCTGGCCACGGCGGCAAGGCGC
GCAGCCACGTTAAGAGCAAGCCGTCGTCAGGTCACGGCAGTGGCCGTGACGTGCAGTCCGAGAAGAGGTCGTTGCACCGG
CGGCGAGTGAGCACCGGTGGCCGGACCGCCGTGTGGAGGCCACACCTCGAGTGCATCGTGGAGGGCACTTGACTAGTTCA
CTACCTAGTTAATTTTTGTTCTTTCTTTTCCTTTTTCTTTGGCATGGGTGTCATTTTTCTCTCTTGTGCGCATGGTTAAT
GTGTATGCTTCTTTGTGACCCTTTTTCTAAGTGTACATCCATGTAATGTTTTTCCCTTCCTGGATATATATGATGGACAT
GGAGAGGGAAGGTTCTGAATTCTTGTTCTAACTACTGCCTTTTTTTCTCCTCTAACTATTATTGTTGTTCCATTCTATCC
TCCGT-TTTTGTGGATGAGTGTTTGATTGGCTCAAGGAGGAAGATAACATATGAAATTGGGCATGTGCTTCTTTTTTT--
-CTCAAGAAAATAAAAGGAAAGAAAAA-CAATGCCACAACTTGTGT--ATGGAGTTTCAATTTGTTCATCCTTTAAAGGT
CAAACTAGTGGTAATGTCAATCAATCCCCACTGCTTACCTTCCAATAATCCATGGAGCCAAGCACAAGTTTGGTCTCTTC
TCACAACCAAGATACATATCGAAGGTTATATTAGAAACGAAGCCTCAATTTCCAATCATGCCTTAGTTTCTAATCATCAT
TTGCTAACTAATAGTGGGGGACATACATCATTAGACCATGAATGATTGATGGTTCTTTCTTAAATTTCATGTGGAGGTTG
ACAAAAAGACACCCTAGCAAGCAGCATTTTTAAGTAAAGCCAGCTATTGGGCCATGGTTTTAGTGCTTATTCTAGCTTTG
TAATTGATGCCTCCCCGTTGAAAGTTGAAACCATGCCTTCTGTGCCAGTAGTACTACTCATTGTAGGCATTAGCAAATGC
ATCTGATTGGTACCCTCAATATAATCATCCAACTAAAGAACAATTACCTA-TTAAATATGCAAAGGAAAATGACACATAA
TGTCAATGATCACAACCTGTGAATTTTCTACAACTTTTCCATAAATATCAGGTAACATTTGTGAATATTAGGATGCTACT
ACACTTTAAAGTAACAGCTTAAGAATGTGTGCTAAAGCAT
>chr1D_1
ATGTATGGACAGTGCAAAAAATCTGTCTAAACACTATCTCATAGCTGTTCTCTCTCCTCCTAATTTTGAAGAAACAATAA
TTTGCAGGGGATTTTTTT--GTGTGGGGGTGATTTTGAAAAATATCATTCCAGTGCTAGCTGTTTCTTCTAATGAAATAG
CATGTTA---AATATGTTTGAGCAAAAAAAA----TTTGGCAATATCTTTGAGCAATTGCCACAAAATAGGAGTGTCCTG
CAAGCTGCAACCAACTTTGCCTTTTCAAATCCTTCATAATTCTTTGTGCATTTTCTGTGGATCTCATTTGTTTCTTTTTT
TCTTTTTCTTTTTTTTGCGGGTGGATCGCATTTGTCTATACAATAGCATACTATGCAAAACTCATACCCCAAG-------
GATCAACACCCATCTACAGTGGCTGGTCTACCAACACATGCATTGTTGTGTGCACCATTCGTTGTGCACAACCAAAACAC
AGCAAGGCAGCGTGGACATGAATGTGCTGTGGGAATAATTGAGGCAA-GCAAGATGGGAGGGAGAGAACATACATAGCTA
G-AAAATAAACAAATTGCCCCCATAAATTCCACTGAACGTGCATGGGGGCTGTAGTTCTAGTAGTGTTCTACTGCCGCTG
TCCTTTGATTGGTACT------------------------------------------------------------TTAG
ATAAGGTTAAAATAGCATCCACATGAGACCATCTTTTGATACCCCCTTGCCCCTAAACTATACACTTCCACACCAAACCA
TGCACATCATCTTTCTTCCCCAATTTTCATTTCCTCTTTTGCCCTCCAGTGAAGCAACGCAAAGACCATGACAAAAAAAT
AA----TTGTATGCTACCTTGGACATATGAAGGAAGGCCACTATATAAGCATTGGTCACCCCACGATGCGAAGGGAGGGA
AAGGAAAAGGACTTGCAAGCGAGAGACATCCTCCTCCTCGACCTCAAAGCAGAGAG--GTGGCAATCAACCAGCTAGGCT
ATTTCTGAACCTAGAGAGAAAGATTCATAGTATCATACAATGGGCAACAGCTTGAGGTGCTGCCTGGCTTGCGTGCTCCC
CTGCGGCGCGCTGGACCTGATCAGGATCGTCCACCTCAGCGGCCGCGTCGAGGAGTACGGCCGGCCGGTCGCCGCCGGCG
AGATCCTCTCCGCCAACCCGAACCACGTGCTGAGCAAGCCGTGCTCGCAGGGCGTCGTGCGGAGGATACTCATCGTCTCC
CCGGAGTCCGAGCTGGAGCGCGGCCAGATATACTTCCTCATCCCGGCGTCCTCGGTGCCGGCCGAGAGGAAGAAGAAGAC
CGGCTCCACCGCTGGCTCGCAAGGCGCCGCTGGCGTCGCGCCGTCAAGGACGGCAAACCCTGGCCACGGCGGCAAGACGC
GCAGCCACGTTAAGAGCAAGCCGTCGTCAGGTCACGGCAGTGGCCGTGACGTGCAGTCGGAGAAGAGGTCGTTGCATCGG
CGGCGAGTGAGCACCGGCGGCCGGACCGCCGTGTGGAGGCCACACCTCGAGTGCATCGTGGAGGGCACTTGACTAGTTCA
CTACCTAGTTAATTTTTGTTTTTTCTTTTCTTTTTCCTTTGGCATGGGTGCCATTTTTCTCTCTTGTGCGCATGGTTAAT
GTGTATGCTTCCTTGTGGCCCTTTTTGTAAGTGTACATCCATCTAATGTTTTTCCCTTCCTTCATATATATGATGGACAT
GGAGAGGGAAGGTTCTGAATTCTTGTTCTAACTACTGCCCTTTTTTCTCCTCCAACTATTATTGTTGTTCCGTTCTATCC
TCCA--TTTTGTGGATGAGTGTTTGATTGGATCAAGGAGGAGGATAACATATGAAAATGGGCATGTGCTTC---TTTT--
-CTCAAGAAAATAAAAGGAAAGAAAAAACAATGCCACAACTTGTGTGTATGGAGTTTCAATCTGTTCATCCTTTAAAGGT
CAAACTAGTGGTAATGTCAATCAATCCCCACTGCTTACCTTCAAATAATCGATGGAGCCAAGCACAAGTTTAGTTTCTTC
TCACAACCAAGATACATATCGAAGGTTAGATTAGCAACGAAGCCTTAATTTCCAATCATGCCTTAGTTTCTAATCATCAT
TTGCTAACTAATAGTGGGGGACATACATCATTAGACCATGAATGATTGATGGTTCTTTCTTAAATTTCATGTGGAGGTTG
ACAAAAAGACACCCTAGCAAGCAGCATTTTTAAGTAAAGCCAGCTATTGGGCCATGGTTTTAGTGCTTATTCTAGCTTTG
TAATTGATGCCTCCCCGTTGAAAGTTGAAACCATGCCTTCCGTGCCAGTAGTACTACTCATTGTAGGCATTAGCAAATGC
ATCTGATTGGTACCCTCAATATAATCATCCAACTAGAGAACAATTACCTA-TTAAATATGCAAAGGAAAATGACACATAA
TGTCAATGATCACAACCTGTGAATTTTCTACAACTTTTCCATAGATATCAGGTAACATTTGTGAATATCAGGATGCTACT
ACACTTTAAAGTAACTGCTTAAGACTGTGTGCTAAAGCAT
>chr1A_1
ATGTATGGACAATGCAAACAATCTGTCTAAACACTATCTCATAGCTGTTCTATCTTCTCCTAATTTTGAAGAAACAATAA
TTTGCAGGGGATTTTTTT--GTGTGGGGGTAATTTTGAAAAATATCATTCCAGTGCTGGATGTTTCTTCTAACAAATTAT
CATGTTTTGTAATAGCTTTGAGCAAAAAAAAAA----TTGCGGTATCTTTGAGCAATTGCCACAAAATAGGAGTGTCCTG
CAAGTTGCAACCAACTTTGCCTTTTCTATTTCTTCGTAATTCTTTGTGCATTTTTTGCGGATCTCATTTGT---------
-----------------------------------CTCTACAATAGCAGACTATGCAAAACCCATACCCCAAGGCCCAAG
GATCAACACCCATCTACACTGGCTGGTCTACCAACACATGCATTGTTGTGTGCACCATTCGTTGTGCACAACCAAAACAC
AGCAAGGCAGCGTGGACATGAATGTGCTGTGGGAATAATTGAGGCAA-GCTAGATAGGAGGGAGAGAACATACATAGCTA
GAAAAATAAACAAATTGCCCCCATAAATTCCACTGAACGTGCATGGGGGATGTAGTTCTAGTAGTGTTCTACTGCCTCTG
TCCTTTGATTGGTACT------------------------------------------------------------TTAG
ATAAGGTTAAAATAGCATCCACATGAGACCATCTTTTGATACCCCCTTGCCCCTAAACTATACACTTCCACACCAAACCA
TGCACATCATCTTTCTTCCCCAATTTTCATTTCCTCTTTTGCCCTCCAGTGAAGCAACGCAAAGACCATGACAAAATA--
AA----TTGTATGCTACCTTGGACATATGAAGGAAGGCCACTATATAAGCATTGGTCACCCCACGATGCCAAGGGAGGGA
AAGGAAAAGGACTTGCAAGCGAGAGACATCCTC------GACCTCCAAGC------------------------------
------------AGAGAGAAAGATTCATAGTATCATACAATGGGCAATAGCTTGAGGTGCTGCCTGGCTTGCGTGCTCCC
CTGCGGCGCGCTGGACCTGATCAGGATCGTCCACCTCAGTGGCCGCGTCGAGGAGTACGGCCGGCCGGTCGCCGCCGGCG
AGATCCTCTCTGCCAACCCGAACCACGTGCTGAGCAAGCCGTGCTCGCAGGGCGTCGTGCGGAGGATACTCATCGTCTCC
CCGGAGTCCGAGCTGGAGCGCGGCCAGATATACTTCCTCATCCCGGCGTCCTCGGTGCCGGCTGAGAGGAAGAAGAAGAC
CGGCTCCACCGCTGGCTCGCAAGGCGCCGCTGCCGTCGCGCCGTCAAGGATGGCAAACCCTGGCCACGGCGGCAAGACGC
GCAGCCACGTTAAGAGCAAGCCGTCGTCAGATCACGGCAGTGGCCGTGACGTGCGGTCCGAGAAGAGGTCGCTGCACCGG
CGGCGAGTGAGCACCGGTGGCCGGACCGCCGTGTGGAGGCCACACCTCGAGTGCATCGTGGAGGGCACTTGACTAGTTCA
CTACCTAGTTAATTTTTGTTCTTTCTTTTCCTTTTTCTTTGGCATGGGTGTCATTTTTCTCTCTTGTGCGCATGGTTAAT
GTGTATGCTTCCTTGTGGCCCTTTTTGTAAGTGTACATCCATGTAATGTTTTTCCCTTCCTTCATATATATGATGGACAT
GGAGAGGGAAGGTTCTGAATTCTTGTTCTAACTACTGCCCTTTTTTCTCCTCCAACTATTATTGTTGTTCCGTTCTATCC
TCCGTTTTTTGTGGATGAGTGTTTGATTGGCTCAAGGAGGAGGATAACATATGAAAATGGGCATGTGCTTC---TTTTTT
TCTCAAGAAAATAAAAGGAAAGAAAAAACAATGCCACAACTTGTGTGCATGGAGTTTCAATCTGTTCATCCTTTAAAGGT
CAAACTAGTGGTAATGTCAATCAATCCTCACTGCTTACCTTCAAATAATCCATGGAGCCAAGCACAAGTTTGGTCTCTTC
TCACAACCAAGATACATATCGAAGGTTAGATTAGAAACGAAGCCTTAATTTCCAATCATGCCTTAGTTTCTAATCATCAT
TTGCTAACTAATAGTGGGGGACATACATCATTAGACCATGAATGATTGATGGTTCTTTCTTAAATTTCATGTGGAGGTTG
ACAAAAGGACACCCTAGCAAGCAGCATTTTTAAGTAAAGCCAGCTATTGGGCCATGGTTTTAGTGCTTATTCTAGCTTTG
TAATTGATGCCTCCCCGTTGAAAGTTGAAACCATGCCTTCTGTGCCAGTAGTACTACTCATTGTAGGCATTAGCAAATGC
ATCTGATTGGTACCCTCAATATAATCATCCAACTAGAGAACAATTACCTACTTAAATGTGCAAAGGAAAATGACACATAA
TGTCAATGATCACAACCTGTGAATTTTCTACAACTTTTCCATAAATATCAGGTAACATTTGTGAATATCAGGATGCTACT
ACACTTTAAAGTAACTGCTTAAGAATGTGTGCTAAAGCAT
>SNPs
----------------------------------------S---S-----------------------------------
------------------SS---------------------S--------------------------------------
--------------------------SSSSSSSSS---------------------------------------------
-------------------------------------------S----S-------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------------S-------------------------------------------------------------
----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
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--------------S--------------------------------------------------------------S-S
-SSSSS--------------------------------------------------------------------------
--------------------S-----------------------------------SS---------S-----------S
-S------------------------------------------------------------------------------
-------------------------------------------------------------S-------S-----S----
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-----------------------------------S--------------------------------------------
--------S-------------------------------------------------------------------S---
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-----------S-----S--------S----------------------------------SS-----------------
---------------------------------------S------------S------------------S--------
-----------------------------------------S--------------S--------------SSS------
-------------------------------------------------------------S------------------
------------------------------------------S-------------------------------------
----------------------------S----------------S----------------------------------
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-----------------------------------S--------------------------------------------
--------------------------------------------------------------------S-----------
---------------S------------------------
>forward_1042
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--------------------------------------------------------------CAATCGACCAGCTAGGCC
AG------------------------------------------------------------------------------
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>reverse_2043
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------------------------------------------CAATAATCCATGGAGCCAAGCA----------------
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