>input_sequence_77779
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-----------------------------ATGGTCGCGTCGTCGCTTAACCCGGAGGCCCCGCTCTTCATCCCGGCAGCG
TTCCAGCAGGTGGAGGACTTCTCACCGCAGTGGTGGGACCTCGTCAAGTCCACCGCCTGGTTTCGCGACCACTGGTACCA
CCAGCACCAGCAGCTCGACGATATGGTCGACTCCCTCATGGCCTTGGAGGCCGAGGACGCCA------------------
------------TCG------------------------CCGTCGAGGCTT------CGCAGCCGCAGCCGCCAGCGGCA
CTCAAGATTGGTACGTA-TCGACCAA---------TTCACTCTCCACGCCTATACATGTACAGTACTGTATATGATATGA
GCGCTCAAGTAAAAGATGAAGCAAGACTGCAGTGAGCTCATCACGTATGTGCTTCTGTATGTGCAGACGGGGTGCTCAAG
GCGCTGAGCCTGGCGTCCCCAAGCCCAAAGG---------------GTGGCTTCTCGGAGAAGCCTAGGTACACCGAGAA
GCCCACCAAGTACGCCGGCAGCCCGAGGAGCGGTGGCGCACCGCGCTTCATCCACCAGCCTCGCTAG-------------
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>chr1A_1_TraesCS1A01G116700
ATTTTAAAAAAATTCAAGAAAAATCTCGCGTGTACATCTGGACATCCTATGGTCGCACACAAATTTTTGGTGAAAATGGA
CGTTTTTTGTGGCATGTGTGAAAAATTAAAAAAAATGCCTCATGAATAGCTATAATCAAGCATCAAAAATTGTCTTTTTT
ACACAAACCAAAAATGTCCCTTTTCTCCGAAACTTGGTGCACCCACATATAATGTCCGGATTTATACGTGTGATTTTTTC
TTAAATTTTTTTAACTTTATAAATTTTGTATTTAGATAATGGGTGCATATACACCTATGAGCCAAAGTGAATTTCCGGCA
TCGGTTAGCAAGGACCTTGGCCGCGCCCGCAATATTGTATAGGACATTGCACAGACTAATTGGCCTAAACTAAGCGCGCT
AATCGGATGACTGTGCACTAGACCGGCCCAAAATTTATGCACTTCCCAT----GAGC-------------GTGTGTGTGT
GGCTGCTCCGTGTGAGTCAATGGCCCGTGGCAAGCATGAGCGATTTCGTCGGCGGTCCACTCTTGTGTTG----CGCGTG
AGTATTTTTCGTCTGATGTGCCACGACCGGCTGGAAGCTGCGTCCGACCCAGCCAGCGCC-AACAAGGAAGCCTCGGTCG
CACCTTCCTTCCATCC-ATCCTCTAGGCCTCGATCGGTCACAGTGC----TATAAAAATCCCATCGTTCCCACTCACAAA
CCAACCCAACACCCGGCGGTCCACTATCCAGATCCAGATTCTCTATCCTGACCCTGCTCCTGCGATCCCCAACCGACCCT
GCTC-------CTGCGATCCCCAACCCCAATCCAAGGTA---TGC----GTGCACCAAGAACCGTC-TCTGTCCCGT---
-----TTGT-AGATCTGCCGAGGACCGCGCTCTAGTTTCTT---GATCTGCAACCTTTTT-CATCTCTGTTTCGCGACGC
CAACTCACGACTGGATCCGGTCGCT-----------GGTCTCTGCGTGGTTTTGATTTTGATCCGACCAGGAACAGACCA
AGAGCAACAGGGA---GACCATGAGCGCCATGGTCGCGTCGTCGCTTAACCCGGAGGCCCCGCTCTTCATCCCGGCAGCG
TTCCAGCAGGTGGAGGACTTCTCACCGCAGTGGTGGGACCTCGTCAAGTCCACCGCCTGGTTTCGCGACCACTGGTACCA
CCAGCACCAGCAGCTCGACGATATGGTCGACTCCCTCATGGCCTTGGAGGCCGAGGACGCCA------------------
------------TCG------------------------CCGTCGAGGCTT------CGCAGCCGCAGCCGCCAGCGGCA
CTCAAGATTGGTACGTA-TCGACCAA---------TTCACTCTCCACGCCTATACATGTACAGTACTGTATATGATATGA
GCGCTCAAGTAAAAGATGAAGCAAGACTGCAGTGAGCTCATCACGTATGTGCTTCTGTATGTGCAGACGGGGTGCTCAAG
GCGCTGAGCCTGGCGTCCCCAAGCCCAAAGG---------------GTGGCTTCTCGGAGAAGCCTAGGTACACCGAGAA
GCCCACCAAGTACGCCGGCAGCCCGAGGAGCGGTGGCGCACCGCGCTTCATCCACCAGCCTCGCTAGGTTGGGATGTCAA
GCTTCAAGAATCGAGCAAATCCTGC---------GCCTGCAGTGATGCATTGCTCTGGCTGCC-----GCCGCC------
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-GTCTCATCTTTCAAGTCTTCTTCTACTA----GT---AGTAAGTAGTGGTGTCCGTTTGTATATTATATTAAGTACGTA
GAAATGAAATGACCTAAGAAAAAGGCAACAAAATGCAACCGATGTTCAGTGTGATTTGCCTTGCAAGTTATGTTCTGCTC
AGTGCGTGTGATGGTTCAGCCTCGTTCGCTCCTCGCTCCTTTTTCACCCCACGTACGTCAGAAAAAGGAGCCAGAAAAAA
GAGGAGATAAAAAACAACCCCGACCCCACGAACACCCCGTCCCATGATCCAATCTCCCCCGACCCCTCCGCCCTCGTTCA
ACCTCCCCTCGTACGATAGAGGAAGGAAAAAAGGCGCCTGCTAGGCGTCATCCGGCTTATAACTTGCAGTTATAAGCCGC
CTTATCTACCGTCCGATATGATTAATCAAGGCCATCAGTTTGTATCCCCGCATCACAGTACGTCCACAGCCCCGCGACAT
TAACTGATACAAACCGTTCAATGGAAGACGCTACCAAGATCAGAGCAAGCAGCGCTTGCCGTCGGCCGCATGCAGCACGG
TCGGTGTCGTGGTGGAGCTGCAATGGAACAAGATATGATTAATCAAGGCCATCAGTTTGTATCACCGCATCACAGCACGT
CCACAGCCCCGCGACATTAACTGATACAAACCGTTCAATGGCAGACGCTACCGAGATCAGAGCAAGCAGCGCTTGCCGTC
GGCCGCATGCAGCATGGTCGGTGTCATGGTGGAGCTGCAATGGAACATCGCCGGAGGTCGCCGCTGCTGTAATGGAGCAT
CACTTGGCTGATGGTGCCGTGGTGGAGCTGCAATGAAACATCACTGGGGGTCGTCGCTGCTACGGTGGAGCGTCGCCGGA
CCGTCGATCCGTGGTGCTGTGATGAAGCATTGTCGAACCGCCGACGTCGGCGGTG
>chr1D_322
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-CGGTTAGCAAGGACGTTGG------CCGCAATCTTATATAGGACATTGCACAGATTAATTGGCCTAAACTAAGCACGCT
AATCGGATGGCTGTGCAGTAGACCGGCCCAAAATTTAAGCACGTCCTATATATGAGCACGACCGTCGCGGGTGTGTGTGT
GGCTGCTCCGTGTGAGTCAATGGCCCGTGGTAAGCATGGGCGATGTCGTCGGCGGTCCACTCTTGTGTTGGGGACGCGTG
AGTATTTATCGTCCGATCTGGCACGACCGGCTGGAAGCTGCGTCCGACCCAGCCAGCGCC-AACAAGGAAGCCTCGGTCG
CACCTTCCTTCCATCCTAGAGAG-------GCCTCGGTCACACTGC----TATAAAAATCCCATCGTTCCCACCCACAAA
CCAACCC----------GGTCCACTATCCAGATTCAGATTCTCTATCCTGACCCTGCTCCTG------------------
---C-------CTGCGATCCCCAACCCCAATCCAAGGTA---TGCATGCGTGCACCAAGAACCGTC-TCTGTACCGTGCT
ACCGTTTGT-AGATCTGCCGAGAACCGCGCTCTAGTTTTTT---GATCTGCAACCCTTTTTCA--TCTGTTTCGCGACGC
CAACTCACGACTGGATCCGGTCGCT-----------GATCTCTGCGTGGTTTTGATTTTGATCCGACCAGGACCAGACCA
AGAGCAACAGGGA---AATCATGAGCGCCATGGTCGCGTCGTCGCTTAACCCGGAGGCCCCGCTCTTCATCCCGGCAGCG
TTACAGCAGGTGGAGGACTTCTCACCGCTGTGGTGGGACCTCGTCAAGTCCACCGCCTGGTTTCGCGACCACTGGTACCA
CCAGCACCAGCAGCTCGACGATATGGCCGACTCCCTCATCGCCTTCGAGGCCGAGGACGCCA------------------
------------TCG------------------------CTGTCGAGGCTTCGCAGCCGCAGCCGCAGCCGCCAGCGGCA
CTCAATATTGGTACTTTATCACCCAA---------TTCACTGTCCACGCCTATATATGTACAGTACTGTATATGATATGA
GCGCTCAAATAAAAGATGAAGCAAGACTGCAGTGAGCTCATCACGTATGTGCTTCTGTATGTGCAGACGGGGTGCTCAAG
GCGCTGAGCCTGGCGTCCCCAAGCCCAAAGGGCGGCGACGCCCTGCGTGGCTTCTCGGAGAAGCCTAGGTACACCGAGAA
GCCCACCAAGTACGCCGGCAGCCCGAGGAGCGGTGGCGCACCGCGCTTCATCCACCAGCCTCGCTAGGTTGGGATGTCAA
GCTTCAAGAATCGAGCAAATCCTACGCTTTCTCTGCCTGCAGTGATGCATTGCTCTGGCTGCT-----GCCGCC------
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-G--------------------------A----GT---AGTAAGTAGTGGTGTCCGTCTGTATATTATATTAAGTAC-TA
GAAATGAAATGACCTAAGAAAAAGGCAACAAAATGCAACCGATGTTTAGTGTGATTTGCCTTGTAAGTTATGTTGTGCTC
AGTGCGT-------------------------------------------------------------------------
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>chr1B_347
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--------------------------CCGCAATCTTGTATAAAACATTGCACAAACTAATTGGCCTAAACTAAGCACGCT
AATCGGATGGCTGCGCAGTAGCCCGGCCCAAAATTTAAGCACGTCCTAT----GAGCACGACCGTCGCGGGTGTGTGTGT
GGCTGCTCCGTGTGAGTCAATGGCCCGTGGTAAGCATGAGCGATGTCGTCGGCGGTCCACTCTTGTGTTGGGGACGCGTG
AGTATTTTTCGTCCTATCTGGCACGACCGGCTGGAAGCTGCGTCCGACCCAGCCAGCGCCGAACAAGGAAGCCTCGGTCG
CACCTTCCTTCCATCCTAGAGAG-------GCCTCGGTCACACTGC----TATAAAAATCCCATCGTTCCCACCCACAAA
CCAACCCAACCCAACCCGGTCCACTATCCAGATCCAGATTCTGTATCCTGACCCTGCTCCTG------------------
---C-------CTGCGATCCCCAACCCCAATCCAAGGTA---TGCATGCGTGCACCAAGAACCGTC-TCTGTCCCGTGCT
ACCGTTTGT-AGATCTGCCAAGAACCGCGCTCTAGTTTCTT---GATCTGCAACCCTGTTTCATCTCTGTTTCGCGACGC
CAACTCACGACTGGATCCGGTCGCT-----------GATCTCTGCGTGGTTTTGATTTTGATCTGACCAGGACCAGACCA
AGAGCAACAGGGA---AATCATGAGCGCCATGGTCGCGTCGTCGCTTAACCCGGAGGCCCCGCTCTTCATCCCGGCAGCG
TTACAGCAGGTGGAGGACTTCTCACCGCAGTGGTGGGACCTCGTCAAGTCCAGCGCCTGGTTTCGCGACCACTGGTACCA
CCAGCACCAGCAGCTCGACGATATGGCCGACTCCCTCATCGCCTTCGAGGCCGAGGACGCCA------------------
------------TCG------------------------CCGTCGAGGCTTCGCAGCCGCAGCCGCAGCCGCCAGCGGCA
CTCAAGATTGGTACGTG-TCAACCAA---------TTCACTCTCAACGCCTATATGTGTACATACTGTA----GATATGG
GCGCTCAAATAAAAGATGAAGCAAGACTGCAGTGAGCTCATCACGTATGTGCTTCTGTATGTGCAGACGGGGTGCTCAAG
GCACTGAGCCTGTCGTCCCCAAGCCCAAAGGGCGGCGACGCCCTGCGTGGCTTCTCGGAGAAGCCTAGGTACACCGAGAA
GCCCACCAAGTACGCCGGCAGCCCGAGGAGCGGTGGCGCACCCCGCTTCATCCACCAGCCTCGCTAGGTTGGGATGCCAA
GCTTAAAGAATCGAGCAGATCCTGCGCCTTTTCTGCCTGCAGTGATGCATTGCTCTGCCTTCTTCTAATACACCATCTGT
CCCAAAAATAAATGTCTCAAACTTAATACAACTTTGTACTAGCTCTAATACAAAGTTGAGACACTTATTTCGAGACGGAG
GG--------------------------A----GT---AGTAAGTAGTGGCGTCCGTTTGTATATTATATTAAG----TA
GAAATGAAATGACCTAAGAAAAAGGCAACAAAATGCAACCGATGTTTAGTGTGATTTGCCTTGTAAGTTATGTTGTGCCC
AGTGCGT-------------------------------------------------------------------------
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>chr6B_474
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----------TGTGAGTCAATGGCCCGCGGCGAGCATGGGCGATGTCGTCGGCGGTCCACTCTTGTGTTG----CGCGTG
ACTATTTTTTGTCCGAACA------ACCGGCTGGAAGCTGCGTCCGACCCAGCCAGCGCCGG-CAAGGAAGCCTCGGTCG
CACCTTCCTTCCATCCCATCCTTTAGGCCCGCCTCGGTCACACTGGTACGTATAAAAATCCCATCGTTCCCTTCTCAGTT
CTCA--CAACCCAACCCAG-------TCCAGATCCAGATTCCCTATCCTCACCCTGCTCCTG------------------
---CGAATCTGCTGCTATCCCCAACCCCAATCCAATCCAAGGT--ATGCATGCATCAAGAACCGTTTTCTGTCCCGTGCT
ACCTTGTGTAAGATCTGGCGAGAAGCGCGCTCTAGTTTCTT---GATCTGCAACCGT-TTTTGGTTTTTGGT--------
-------------------------------------------------TTTTGGTTTTGATCCGAGCAGA------CCA
ACGGCAGCAGGGATAGAATCATGAGCGCCATGGTGGCGTCGTCGCTCAACCCGGAGGCCCCGCTCTTCATCCCGGCAGCG
TTCCAGCAGGTGGAGGACTTCTCGCCGCAGTGGTGGGACCTCGTCAAGTCCACCGCCTGGTTTCGCGACCACTGGTACCA
CCAGCACCAGCAGCTCGATGCCATGGCCGACTCCCTCGTCGCCTTCGAGGCCGAGGACGCCATCCACGACGACCTCTTGC
ACGGCTTCGCTGTCG------------------------TCGTCGAGGCTT------CGCAGCCGCACCCGCCAGCGGCA
CTCAAGACTGGTACGTACTCCCAAACCAACTCACCTTGTGATG-------------------------------------
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---------------------------------------------TGCCATGCTCTGGCTGCTGCCGTGCCGCC------
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-GTCTCATCTTTCAAGTCTTCTTCTAGTATACTGT---AGTAAGTAGTGGTGTCAGTTTGTATATTATATTGAG----TA
GAAATGAAATGACCCAAGAAAAAGGCAACAAAATGCAACCCATGTTTAGTGTGATTTGCCTTGTAGGTTATGTTCTGC--
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>chr4B_603
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----------------------------------------------------------------AAGGAAGCCTCGGTCG
CACCTTCATTCCGTCCTCT--AG-------GCGTCGGTCACACTGC----TATAAAAATCCCATCGTTCCCCA-------
CTCA--CAACCCAACCCGGTCCACTATCCAGATCCATATTCTCTATCCTGACTCTGCTCCTG------------------
---CG-----------ATCACCAACCCCAATCCAAGGTA---T--ATGCGTGCACCAAGAACCGTC-TCTGTCCCGTGCT
ACCGTGTGT-AGATCTGCCGAGAACGGCGCTCTAGTTTCTTTTTGATCTGCAACCTT-TTTCATCTCTGTTTCGCGACAC
CAACTCACGACTGGATCCGGTCGCTGGTCTGTCCCTGATCTCTGTGTGGTTTTGATTTTGATCCAACCAGG------CCA
ACAGCAACAGGGA---AATCATGAGCGCCATGGTCGCGTCGTCGCTCAACCCTGAGGCCCCGCTCTTCATCCCGGCAGCG
TTCCAGCAGGTGGAGGACTTCTCGCCGCAGTGGTGGGACCTCGTCAAGTCCACCGCCTGGTTTCGCGACCACTGGTACCA
CCAGCACCAGCAGCTCGACGATATGGCCGATTCCCTCATCGCCTTCGAGGCCGAGGACGCCA------------------
------------TCGACGACGACCTCTTGCACGGCTTCGCCGTCGAGGCTT------CGCAGCCGCAGCCGCCAGCGGCA
CTCAAGACTGGTACC--------AACCAATTCACTTTCACTGTCCACGCCTATATATGTACTGTAC--TATATGATATGA
GCGCTCAAATAAAAGATGAAGCAAGACTGCAGTGAGCTCATCACGTATGTGCTTCTGTATGTGCAGACGGGGTGCTCAAG
GCGCTGAGCCTGGCATCCCCAAGCCCAAAGGTCGGCGACGCCCTGCGTGTCTCCTCGGAGAAGCCTAGGTACACCGAGAA
GCCCACCAAGTA-GCTGGCAGCCCGAGGAGCGGTGGCGCACCGCGTTTCATCCACCAGCCTCGCTAGGTTGGGATGTCAA
GCTTCAAGAATCCACCAAATCCTGCGCCTTGTGTCA-TGCAGTGATGCATTGCTCTGGCTGCT-----GCCGCC------
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-GTCTCATCTTTCAAGTCTTCTTCTAGTACTCGCGCCCAGTAAGTAGTGGCGTCCGTTTGTATATTATATTAAG----TA
GAAATGAAATGACCCAAGAAAAAGGCAACAAAATGCAACCGATGTTTAGTGTGATTTGCCTTGTAAGTTATGTTCTGCAC
AGTG----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--------------S----SSSSSS-------S-----------------------------------------S----
---------S-------S-------------------S----S---S---------------------------------
--------------------------------------------S-----------------------------------
-------------S---S--S-----------------------------------------------------------
----------------------S------SSSS---------S------------------------------S------
----------S-SSSS----------------------------------------------SSSSSSSSSSSSSSSSSS
SSS-----------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-------------------------------------S----------------------------------S-------
----------------S-S-------------------------------------------------------------
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--------------------------S------------S-----S----------------------------------
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--------------------S---------------------------------S-------------------------
--------S-----------------------------------------------------------------------
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--------------------------------------------------------------S-----------------
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--------------------------S--------------------------------------------------S--
----------------------------------------------S----------------S----------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_44
------------------------CTCGCGTGTACATCTGGACA------------------------------------
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>reverse_2042
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-----------------------------------------TTTCACCCCACGTACGTCAG-------------------
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