>input_sequence_77762
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------------------------------------------------------------------------------AT
GAACACGGACATCACCGCGTCGGTGAAGCCGGAGTACCCGGTGGTGGACCGGAACCCTCCCTTCACCAAAGTCGTCGGCA
ACTTCTCCACGCTCGACTACCTCCGCCTCTCCACCATCTCCGCCGTCTCCGTCACCGTCGGCTACCTCTCCGGTACTCCC
TCCTAGCTCCCCCCACGAGT----CACGAATATCCTCT----------CCACAGAGGCTCAAATCGGCGTCCTCGGGCG-
GTGCTCGCAGGGATCAAGCCGGGGATCCGCGGGCCGTCGATGGTGACGGGGGGCCTCATCGGCGTCCTGGGCGGGTTCAT
GTACGCCTACCAGAACTCCGCCGGGAGCCTCATGGGGTTCTTCCCCAACGAGTCCGAGGTCGCGCGCTACAAGTACA-GC
TGTA--------GTAGCAGGAGGCGCCATTTCTCCTCGCTTCGCTACCGCAAAAGTGTTACAGTACATCTTTTTTTCTTT
CTATATCTAATCTCGT---GTGAGCTGCACTTGCTGTGGGCAATGCG-TGATCTTGGTTGA-------------------
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>chr6A_1_TraesCS6A01G076300
CGATATATCAACCGATTTATCGCTTATCGAGGTCAGACCGATAAGATAAGTGAATATCACTGTCATTTATCAGTCTGACC
GATATATTAGTCTAACAACCGATATATCATTGATATTTGCCGATATTCACCGATAAATCTGTAGGACCTGACTGATTTAG
CCCTTGATTGTTTTTTGGGTTGAGCTTTTATAGTCTGATACATAGTCGATGCCTTCTATTTGTGTAGCTGGCTACTTCCG
GTACATCTCAGGTTGCTTAAGGAATACAGACGACGTGGCTCTAACAAAGGTAACAAACCTTCTTCTCTAACAGAATATGT
ATATTTTGTTCTTTTTTTGCTATTCCCATTATTGTATTTTGTTTGTTTTGTCAGATTGCCCAATGTGATGTGAGGTTCGA
CTTCAATGAGCTTACCAACGACAATGTAATCTTTGAGGCTCCTAGGGCCTCAATACTATGGAGCTCGAGAAAGGACCAAG
AATGGGAAGAGATGGATGGGATCGTTTCCTCACCCATAGTCGTCTCGCTGGGGTGATCTAGCTTCTCCTTAAAAGTAAGA
AGACCTAGGATTTTTATTATCTATCTCAACATGGATGAGGAGGAGGACCCAGATGATGTTGCAGTCTTAAAAAAATATAC
TTAGTGTAGAATCCGATGATATGTGAATTAAAATGTTCCGTTTTTTGATAATTCCGCATGACATACTCATTTATCTTGGC
AGGGTCGAACTTCGTAACTTACAAAGAAGTTTTTTCTTTTTGAGGGGTGTCACTTACAAACAAGTTTTTTTTTTGAGAAA
TACTTACAAAGAAGTAAGAAGTGTAAACAACCGGACCCGT----CTTTCAGAACTTGGGCTGTAACAAGCCCGGCCCA--
--------CAGCGCGCCCACTACTCTCTC-T--CACACCCACTGTGAGAACCCGAGAACCACACCGGACACA--------
-CCTCCT---CCCAGCGACCAAATCCGCCGCCGCCA--------CCGGAAGGAAGGAAGAGAGCCCCGCGGC-GCGCGAT
GAACACGGACATCACCGCGTCGGTGAAGCCGGAGTACCCGGTGGTGGACCGGAACCCTCCCTTCACCAAAGTCGTCGGCA
ACTTCTCCACGCTCGACTACCTCCGCCTCTCCACCATCTCCGCCGTCTCCGTCACCGTCGGCTACCTCTCCGGTACTCCC
TCCTAGCTCCCCCCACGAGT----CACGAATATCCTCT----------CCACAGAGGCTCAAATCGGCGTCCTCGGGCG-
GTGCTCGCAGGGATCAAGCCGGGGATCCGCGGGCCGTCGATGGTGACGGGGGGCCTCATCGGCGTCCTGGGCGGGTTCAT
GTACGCCTACCAGAACTCCGCCGGGAGCCTCATGGGGTTCTTCCCCAACGAGTCCGAGGTCGCGCGCTACAAGTACA-GC
TGTA--------GTAGCAGGAGGCGCCATTTCTCCTCGCTTCGCTACCGCAAAAGTGTTACAGTACATCTTTTTTTCTTT
CTATATCTAATCTCGT---GTGAGCTGCACTTGCTGTGGGCAATGCG-TGATCTTGGTTGAATAATTGTTGGACCTTGCT
GCAAACTAGTGAGGAATTCATGAT-ATGATTTTACTCGTCTTGTTATGACCGGATCATGATTTGATCGCCATTTTGGTAA
ACTTCTTGAATTGGGGAAATGTTGTGTTAACATGGATTTTAGTACTAGTTAACTCTCTATGCACGCATATTTTTCATAC-
GATCTGGGAGATTGCGATATTCGATATATATTGCTTCTCACATTGTCTTCGATCGATCCGGTCAGCTGATTTTTTGTAGG
TTTGGGCTTCCTTCGGTTTGTTCTGGCTGGTCTGGTTTTCTTTGTCCATGC-------TGCACAGTGAGGCGATACAGGG
GAGGCGGTATCGAGGGTGAGGGGATTACATCTGCACTACTTCCCACTATTTCCTGCTGCAGGC---TTTCGTGCTACTTC
CCCGGGGGTTTGGATTGCCCTCGGCGGGTGCTGCCCGTCGATTAACGTCGTCGGCTTCTCTTCCTCACCACTTTAGATCG
GGTGGCTGCGCCATCGCTGGCATCGAGATGGGTGTTGAGCGAGTGATCGCTCTCAACGCGCCTCCCGTATTCACCGATGC
CAACAAGCCCAGCTCCCTCCGGCCACCAGCAGGTAGCACCTCGTGAATTATTTTCCCCTCTCTCAAAGAAGGTGTGCAAG
GGGTTTCATATTCAACCTTAATGATCCTTAGTTTACATTAATATGATTAAAGCCTGTTGATGTAAATTACGAGCAAACTA
TTA------------------------GAGAGTTGACATCTGAGTTACAGAGTCAGAAGACCCCCATTTCGTACTGGTAC
ACCTTATTATGGCTGAATCTCACCAATTCTAGCCACATTAGGGAGCATAATTTCAATGAAGCGTGCTTTTCACCATGTGT
TATGAAAAGAACTTGAAAAATCAACTCTATAAATTGGTGTTGGCTATTTGTTTGGAGGGTCCGTAGAAGTTCTGCTTCTG
ACTAATTGGAGTTCGGCAGAAGTTGGTACAAGCAGATCCTTGAAACTGTGTCCAAGA
>chr6B_813
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------------AGTAAGAAGTGTAAACAACCCGACCCGT----CTTTCAGAACCTGGGCTGTAACAAGCCCGGCCCA--
--------CAGCGCCCCACTGTGAGAC-----------------TGAGAACCCGAGAACCACACCGGACACA--------
-CCTCTCAGCCCCAGCGACCAAATCCGCCACCGCGCCGCCGCCGCCGGAAGGAAGGAAGAGAGCCCCGCAGC-GCGCGAT
GAACACCGACATCACCGCGTCGGTGAAGCCGGAGTACCCGGTGGTGGACCGGAACCCCGCCTTCACCAAAGTCGTCGCCA
ACTTCTCCACGCTCGACTACCTCCGCCTCTCCACCATCTCCGCCGTCTCCGTCACCGTCGGCTACCTCTCCGGTACGTCC
TCCTAGCCCCCAACCTTCTCCCCGCAGGACTACCCTCT-CCACTTCGCTCCCAGTGGCTCAGATCCTCGTCCTCGGGCG-
GTGCTCGCAGGGATCAAGCCGGGGATCCGCGGGCCGTCGATGGTGACGGGGGGCCTCATCGGCGTCTTGGGAGGGTTCAT
GTACGCCTACCAGAACTCCGCCGGACGCCTCATGGGGTTCTTCCCCAACGAGTCCGGGGTCACGCGCTACAAGTACAAGC
TGTAGTAGCCTAGTAGGAGGAGGCGCCATTTCTCCTCGCTTCGCTACCGCAAAAGTGT-----TACATATTTTCATCTTT
CTATATCTAATCTCGT---GTGAGCTGCACTTGGTGTGGGCAATGCAATGGTCTTGGTTGAATAATTGTTGTACCTTGCT
GCAAACTAGCGAGGGATTCATGCT-ATGATTTTACTCGTCTTGTTATGACCGGATCATAATTTGGTCGCCATTTCGGTGA
ACTTCTTGAATTGGGGAAATGTTGTGTTAACATGGATTTCAGTACCAGTTAACTCTCTATACACGATTTTTTTCCCATGT
GATCTGGGAGGTTGCGATATTCGATATATAATGCTTCTCGCATTGTCTTCGATCGATCCAGTCAGCTGAATTTTTGTGTG
TTTGGATTTCCTTCGGTTTGTTCCGCCTGGTCTGGTTTTCTTCACCCCGGATGCACATTGCGCAGTGAGGCGGTACAGGG
GAGGCGGTACCGAGGGTGAGGGGATTACATCTGCACTGCTTCCCACTATTTCCTGCTGCTCCAGGGTTTCGTGCTACTTC
CCCGGGGGTTTGGATTGCCCTCGGCGGGTGCTGCCCGTCGATTCACGTAGTCGGCTTCTCTTCCTCCCCTATTTAGATCG
GGTGGCGGCGCCGTCGTTGGCATCGAGGTGGGTGTTGAGCGAGTGATGGCTCTCAACACGCCTCCCGTATTCGCCGATGC
CAACAAGCCCAGCTCCCTCCGGCCACCAGCAGGTAGCACCTCGCGAATTATTTTCCCTCTCTTAAAA-AAGGTGTGCAAG
GGGTTTGATATTCAACCTTAATGATCCTT-GTTTACATTAATATGGTTAAAGCCCGTCGATGTAA--TACGAGCGAACTA
TTAACTTTGTCATCCACATTTCTTTTAGAGAGTTGACATCTGAGTTACAGAGTCAGAAGACCCCCATTTCGGACTGGTAC
ACCTTATTATGGCTGAATCTCACCAATTCTGGCCACATTGGGGAGCATAATTTCAATGAAGCGTCCTTTTCACCA--TGT
TATGATAAGAACTTGAAAAATCCACTCCATAAATCGGTGTTGGCTATTTGTTTGGAGGGTCTGTAGAAGTTCTGCTTCTG
ACTAATTGGAACTTGGCAGAAGTTGGTACAAGCA-ATCCTTGAAACTGTGTCCAAGA
>chr2A_816
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---------------AAGAAGTGTAAACAAGCCGGCCAGGCTTGCTTTCAGAACTTGGGCTGCATCAAGCCCGGCCCATT
GTCACACACAGCGCCCCCACTACTCTC-CGT--CTCTCCCAGTGAGAGAGCCCGAGAGCCACACCTGAATCTCGA---CC
TCCTCCT---CCCAGCGACCAAATCTGCCGCCGCGCCGCC--CGCCGGAAGGAACGAATCGAGCC---------CGCGAT
GAACACCGACATCACCGCGTCAGTGAAGCCGGAGTACCCGGTGGTGGATCGGAACCCTGCCTTCACCAAGGTCGTCGGCA
ACTTCTCCGCGCTCGACTACATGCGCCTCTCCACCATCTCCGCCGTCTCCGTCACCGTCGGCTACCTCTCCGGTACGCCC
TCCTAGCCCCTAACCTTCTCCCCGTACGGCCGTCCTCT-TCCCTTCGCTACCGGAGGCTCAAATCCGCGTTCTTGGGGGT
GTGCTCGCAGGGATCAAGCCGGGGATCCGCGGGCCGTCGATGGTGACGGGGGGCCTCATCGGGGTCCTGGGAGGGTTCAT
GTACGCCTACCAGAACTCCGCCGGACGCCTCATGGGGTTCTTCCCCAACGAATCCGAGGTCGCGCGCTACAAGTACAAGC
TGTA--------GTGGTAGGAGGCGCCATTTCTCCTCGTCTCTCTACCGCAAATGT-------TACATCTTTGCTTTTAT
CTTTCTCTAATCTCGT---GTGAGC----------------AATGTG-TGGTCTTGGTGTAATAAATGGGGTGCCTTGCT
GCACAGTAGTGAGGAATTCATGCT-ATGGTTTTACTCGTTTTGTTATGACCTGGTCATAATTTGGTCGCCATTTTGGTAA
ACTTATGGAATGGG-GAACTTTTGTATTA---------------------------------------------------
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>chr2D_818
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-----------------GAAGTGCAAACAAGCCGGCCTGT----GTTTCAGATCTTGGGCTGCATCAAGCCCAGCCCATT
ACCACACACAGCGCCCCCACTACTCTCGCGT--CTCTCCCAGTGAGAGAGCCCGAGAACCACACCTGAATCTCGACCTCC
TCCTCCT---CCCAGCGACCAAATCTGCCGCCGCGCCGCC--CGCCGGAAGGAGCGAATCGAGCCCCGCGGCTGCGCGAT
GAACACCGACATCACCGCGTCAGTGAAGCCGGAGTACCCGGTGGTGGATCGGAACCCCGCCTTCACCAAGGTCGTCGGCA
ACTTCTCCGCGCTCGACTACATGCGCCTCTCCACCATCTCCGCCGTCTCCGTCACCGTCGGCTACCTCTCCGGTACGTCC
TCCTAGCCCCTGACCTCCTCCCCGTACGGCCGTCCTCTTTCGCTTCGCCCCCGGAGGCTCAAATCCGCGTTCTTGGGGG-
GTGCTCGCAGGGATCAAGCCGGGGATCCGCGGGCCGTCGATGGTGACGGGGGGCCTCATCGGGGTCCTCGGAGGGTTCAT
GTACGCCTACCAGAACTCCGCCGGACGCCTCATGGGGTTCTTCCCCAACGAATCCGAGGTCGCGCGCTACAAGTACAAGC
TGTAGTG-----GTAGAAGGCATCATCATTTCTCCCCGTTTCTCTACCGCAAGTGT-------TACTTCTTTGCTTTTAT
CTTTCTCTAATCTCGT---GTGAGC----------------AATGTG-TGGTCTTGGTGTAATAAATGGGGTGCCTTGCT
GCACAGTAGTGAGGAATTCATGCT-ATGATTTTACTCGTTTTGTTAT-----------AATTTGGTCGCCATTTCGGTAA
ACTTCTGGAAATGGAGAACTGTTGTGTTAAAATAGATTTTTGTATCTTAGATTAA-------------------------
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>chr2B_827
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--------------------------ACAAGCCGGCCTGT----CTTTCAGAACTTGGGCTGCACCAAGCCCAGCCCATA
GTCACACACAGCACCCACACTACTCTC-CGTCGCTCTCCCAGTGAGAAAGCCCGAGAACCACACCTGAATCTCGA---CC
TCCTCCT---CCCAGCGACCAAATCTGCCGCCGCGCCGCC--CGCCGGAAGGAACGAATCGAGCCCCGCGGTTGCGCGAT
GAACACCGACATCACCGCGTCAGTGAAGCCGGAGTACCCGGTGGTGGATCGGAACCCCGCCTTCACCAAGGTCGTCGGCA
ACTTCTCCGCGCTCGACTACATGCGCCTCTCCACCATCTCCGCCGTCTCCGTCACCGTCGGCTACCTCTCCGGTACGTCC
TCCTAGCCCCTAACCTTCTCCCCGTACGGCCGTCCTCTTTC-CTTCGCCCCCGGAGGCTCAAATCCGCGTTCTTGGGGG-
GTGCTCGCAGGGATCAAGCCGGGGATCCGCGGGCCGTCGATGGTGACGGGGGGCCTCATCGGGGTCCTCGGAGGGTTCAT
GTACGCCTACCAGAACTCCGCCGGACGCCTCATGGGGTTCTTCCCCAACGAATCCGAGGTCGCGCGCTACAAGTACAAGC
TGTAGTG-----GTAGACGGCATCATCATTTCTCCCCGTTTCTCAACCGCAAGTGT-------TACATCTTTGCTTTTAC
CTTTCTAATCTCACTTGGCGTGAGCTGCACTTGGTGTGGGCAATGTG-TGGTCTTGGTGTAATAAATGGGGTGCCTTGCT
GCACAGTAGTGAGGAATTCATGATAATGATTTTACTCGTTTTGTTATGACAGAGTCAAAATTTGATCGCCATTTCGGTGA
ACTTCTGGAATTGGAGAACTGTTGTGTTAAAATGGATTTTGGTA------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------S-----------------------------------------------
--------------S------------S------S-S----S--------------------------------------
----------------------------------SS--------------------------------------------
------S---------------------------------------------------S---------------------
----------------------------------------------------------------------------S---
-------S---SS-SSSSSS---------S--------------------S--------------S--------------
-----------------------------------------------------------------------S--------
------------------------SS------------------------------------------------------
----------------S-----------------------------------------SSSSS----------S------
---------------------------------S----------------S--------------------S--------
----------------------------------------------------------S---------------------
---------------------------------------------S--------------S----SS-S----S-SSSS-
----------S-------------------S--------S-------------------S---------S-------SS-
-----SS----------------S-S----------------SSS--SS-S----------S----------S-------
---------S---------------------------S---------------------SSSS-----------------
-------------------------------------------S----S-----------------S--SS---------
------S-----S---S----------S-------------------S---------S--------------S-------
-------------------------------------------S-------------SSSSS-S---S------------
------S----------------------S---------------S--------S--S-------SS-------S-----
-----------------------------------------------------------------------S--------
------------------------------S--------S------------------------S----------SS---
-----S----------------S----S------S--------------------------S------------------
----------SS-S--------------------S----------------------
>forward_528
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----------------------------CTCACCCATAGTCGTCTCGC--------------------------------
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>reverse_1980
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-----------------------------------------------------------AGGCTTTCGTGCTACTTCCC-
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