>input_sequence_77718
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----ATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCCGCTCCCCGCGGCTC
GCTCCAACACGACGGCGGCG---CTTCACGCGACGGCAGCCAGCAGCAGGCGCGACGTCATCACGGGCACGGGCGTGGGA
GCGGCGCTGCTGCTGGCCCTGTGGCCGCAGCGTGCGCGTGCGGCGTCGGATGACGAGTACCTGACGGAGACGACGGAGGT
GATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGACGGAGCTGCGGGAGA
TGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGGACATGTACTCGGCG
CTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGCATCCGCATCCTCGA
GGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGA-------------------------------------
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>chr4D_1_TraesCS4D01G172800
AGGGGATGTATCTAGATGTATTTTAATTCTAGATACATCTCTTTTAATCCATTTTGATGACAAGTATTTTCGGACGGAGG
GAGTATAAGGCAAGCTTTTTGGGACGGAGGCAGTCTACTAATTGCAGCATCTGAGGCTTGTGCATTATTGTACTATTATC
AAGGCTCTTTCGGCTCTTGTATTTTTCGCCTGCTGCCTCTAGCTAAAAACTCACCAATGATGAGTTGCAAAACCTTATTG
CCTACATTGTTTGAACCTCGTGAGAACTGATGCAACATCTGAGGATGAAAAAATCGCCCTTTACTTGAACATGCTGCAAT
TTAGGATTTTCTTGTAGCC-ACAAGTTTTAACCATACACTAACCGATTGATTTATTTACCTTGATCAGTGTGGTTCGTCA
AGGTCAGTTGCTCCTATCAAGGCTGGATTCGTGGCGCAAGTTGGGCGTCGGAAGGCTGGAACTT--AAGTTGGGTAGTGC
GGGGATGCTCTATCAACGTAATCCAACAATTTGCCGATTTACAACAATCTTTATTGTCCTGTTTTCACTGTGCCTAGACC
GATTTGTGGATTTTGTTACTTCCTGTACTATGAATGCTGATGGTGTGAATTTCTATTTATCTCAGAGGATCTAAGTTTGC
GGCGTATTGCCAACTCCTTTGCCTTTTTTACTAGTTTTATTAGTTATCTTCATGAGAAGATTCTACCTGTGACCCTCAAA
CG--------------------ACATCGTATGAAGAGAGATGTGGTAGTATGGTACGGTAGGCATTTGGGCGTTGGAATG
ACGAGAA----------CCAACCACGCAGCCCCGTCGG----CGGACGAGAAAAGGAAAATCCTGGCAACTGAAACACAG
CCTTACAAGAAAACAAGTCATGATAAGAGGATAAGCCGACGTGTCGCCTCTTCCCTTTCTCACTGACCCAAGCTATCAAA
CGACTCGAGCTGAGCTCGCTGCCTCCCTTTCCACAACCTCCCC---TCCCCGCGCAAGCGCACTGAAC----AGAAAGAA
AGAGATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCCGCTCCCCGCGGCTC
GCTCCAACACGACGGCGGCG---CTTCACGCGACGGCAGCCAGCAGCAGGCGCGACGTCATCACGGGCACGGGCGTGGGA
GCGGCGCTGCTGCTGGCCCTGTGGCCGCAGCGTGCGCGTGCGGCGTCGGATGACGAGTACCTGACGGAGACGACGGAGGT
GATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGACGGAGCTGCGGGAGA
TGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGGACATGTACTCGGCG
CTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGCATCCGCATCCTCGA
GGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGAAGGCTTCCATCCACGTCCACACTAGCAAAATGTACGT
GCGTGC---------GTCAAA------------CAGGATAGGGTGAGAACGTCGCGTTGCTTGTCCCGTGGGTCATAAGC
GCTCCGATTTTGAGCCTCGAGTTT--ATCAATTGTTTGTGCGACTTGTCT-AATCGGCTGA-TGATCGGCATGGTGAGAA
TATTGTTGGGGGCATCCTTGATTTTGTGTATCACCGTCTTCCTTGTTCCTCTTTTTTTGGCGCATCAAAAGGGAGTTTTA
TTCATGAATCATAGGGTTACAATCGAGTGACCATAAGTCCTCACAACATGGAGGTCATTTACTCATCCACACTGCAGTAC
ACGACTCTATTATGAGATCTCTTAATTTTATGTGGAATAAACTCCTTATCACCCATCAATGACTTAATCTCAGCTACCAA
GTGCCCATAGGCCGATCGAGACAAGTTGTCACATGTAAGGATTGAAAGAGCCTCCGAGGAATCCGATTGGTCGATTCGTA
TGTTCCTCCTTGCCTCAACGGTGCCCAGCACAGTCCAGGTGCTAAACAGAACGACTTTGCTTTCTGGATGGCTAGTGCTA
GTGGTTTCAAGGGGTTTCATTGCCTCCCGCGGGGCTCCCTCGTCTCCCGTGGACTTAGGGCCATGGAGGCGCGGTGGATT
TTGGTCCTTACCAGTAGGAGGGCTCCGTTTTATGGTTTTTGATGTTGTTTTGAATTTAGGTAGGGTTTGTGTCCTGCTTA
GAAGACGAGACGACGACGGCTCCCCGAAGATGGAATAAGCTTTTCCCTGCCTAGCCCTCGTTCCGGTGATGCTTCTAGTG
TCGTCGGAGGGCGTGTGGAGGTTTGTCTCCGGTGAATCTCGCAGGATTCGGTCGACCTTTGTCTACTATGGATCTGCTTG
GATCCGATCTTCATTCGTCTACGTTCGTGTGTCTATAGGTTAGATCGTTCCGATCTACGCTTCTCTTCATCGACGGCGGT
TACTGTTCTAGTGCATTGGTCCTTTAAG
>chr4A_306
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-----------------------------------------------------------------TGAACCTGCTGCAAT
TTAGGATTTTCTTGTACCC-ACATGTTTTAACCATACGCTAACCCATCGATTTATTTTTCTTGATCAGTGTGGTTCGTCA
AGGTCAGTTGCTCCTATCAAGGCTGGATTCGTGGCGCAGGTTGGGCGTCGGAAGGCTGGAACTT--AAGTTTGGTAGTGT
GCG--------------------------------GATTTACAACAATCTTTATTGTCCTGTTTTCACTGTGCCTAGACC
GCTTTGTGGATTTTGTTACTTCCTGTACTATGAATGCTGCTGGTGTGAATTTCTATTTATCTCAGAGGATCTAAGTTTGG
GGCCTATTGCCGGCTCCTTTGCCTTTGGTACTACTAGTTTTAGTTATCTGCATGAGATGAATCTACCTGTCTGACATGTT
ATTTCGCTCAAAGGACCCAGAAACATCGTATTAAGAGAGATGTGGTGGTATGGTACGGTAGCCATTTGGGCGTTGTAATG
ACGTGTTGTTCCGAAATCCAACCACGCAGCCCCGTCG--------ACGAGAAAAGGAAAATCCTTGCAACTGAAACACAG
CCTTACATGTAAACAAGTCATGATAAGAGGATAAGCCGACGTGTCGCCTATT---------CCTGACCTAAGCTATCAAA
CGACTCAACCAAAGCTCGCTGCCTCCCTTTCCACAACCTCCAATCATCCCCGCGCAAGCGCAGTGAGCAGAAAGAAAGAA
AGAGATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCCGCTCCCCGCGGCTC
GCTCCAACACGACGGCGGCGGCGCTCCACGCGACGGCAGCCAGCAGCAGGCGGGACGTGATCGCGGGCACGGGCGTGGGA
GCGGCGCTGCTGCTGGCCCTGTGGCCGCAGCGCGCGCGTGCGGCGTCGGACGACGAGTACCTGGCGGAGACGACGGAGGT
GATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGACGGAGCTCCGGGAGA
TGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGGACATGTACTCGGCG
CTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGCATCCGCATCCTCGA
GGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGAAGAGT---------------ACTAGCAAAATGTACGT
GCGTGC---------GTGCGTGCGTCAAACAGGCAGGATAGGATGAGAACGTCGCGTTGCTTGTCCCGTGGGTCATAAGC
GCTCCGATTTTGAGCCTCGAGTTT--ATCAATTGTTTGTACGACTTGTCTGAATCGGCTGAATGTTCGACATGGTGAGAA
TATTGTTGGGGGCATCCTTGATTTTGTGTATCACCGTCTTCCTTGTT---------------------------------
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>chr4B_315
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--------------------------------------------------------------------------TGCAAT
TTAGGATTTTCTTGTACCCCACATGTTTTAACCATACGCTAACCGATTGATTGATTTACCTTGATCAGTGTGGTTCGTCA
AGGTCAGTTGCTCCTATCAAGGCTGGATTCGTGGCGCAAGTTGGGCGTCGGAAGGCTGGAACTTAAAAGTTGGGTAGTGC
GCGGATGCTCTATCAACGTAATCCAGCAATTTGCCGATTTACAACAATCTTTATTGTCCTGTTTTCACTGTGCCTAGACC
GCTTTGTGGATTTTGTTACTTCCTGTACTATGAATGCTGCTGGTGTGAATTTCTATTTATCTCAGAGGATCCAAGTTTGC
CTTTTTT------------------------TACTAGTTTTAGTCATCTGCATGAGAAGACTCTACCTGTCTGACTGAC-
------------------------------TGAAGAGAGGTGTG------------------------------------
----GTTGTTCCGAAAGCCAACCACGCAGCCCCGTCCGTCGACGGGCGAGAAAAGGGAAATCCTGGCAACTGAAACACAG
CCTTACAAGAAAACAAGTCATGATAAGAGGATAAGCCGACGTATCGCCTCTTCCCTTTCTCCCTGACCCAAGCTACCAAA
CGATTCGACCTAAGCTCGTTGCCTCCCTTTCCACAACCTCCCC---TCCCCGCGCAAGCGCACTGAGC----AGAAAGAA
AGAGATGAGGTCTCCCGTCCCCGCCATGCTCACCGCCCCATCAGCAGCGGCGGCCGTCGCCAAGCCGCTCCCCGTGGCTC
GCTCCAACACGACGGCGGCG---CTCCACGCGACGGC---CAGCAGCAGGCGGGACGTCATG------ACGGGCGTGGGA
GCCGCGCTGCTGCTGGCCCTGTCGCCGCAGCGCGCGCGTGCGGCGTCGGACGACGAGTACCTGACGGAGACGACGGAGGT
GATCGGGAAGGTGCGGTCGACGATCAGCATGGACAAGACGGACCCCAAGGTGGCGGACGCGGTGACGGAGCTCCGGGAGA
TGTCCAACTCGTGGGTGGCCAAGTACCGGCGCGAGAAGGCGCTGCTGGGGCGGCAGTCGTTCCGGGACATGTACTCGGCG
CTCAACGCCGTGTCCGGCCACTACATCAGCTTCGGCCCCACCGCGCCCATCCCCAACAAGCGCCGCATCCGCATCCTCGA
GGAGATGGACGCCGTCGAGAAGTCGCTCAAGCGCGGCCGCTGAAGACTTCCATCCACATCCACATCCACATCCACATCCA
CACTAGCAGCAAAATGTCAAA------------CAGGATAGGGTGAGAACGTCGCGTTGCTTGTCCCGTGGGTCATAAGC
GCTCGGATTTTGAGTCTCGAGTTTACATCAATTGTTTGTACCACTTGTCTGAATCGGCTGA-TGATCTACATGGTGAGAA
TATTGTTTGGAGCATCCTTGATTTTGTGTATCAGCGTCTTCCTTGTTCCTC-----------------------------
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--------CTTGCCTCAACGGTGCCCAGCACAGTCCAGGTGCTAAACAGAACGGCTTTGCTTTCTGAATGGCTAGTGCTA
GTGGTCTCAAGGGTTTTCATTGCCTCCCGCGGGGCTGCCTA--------TGGACTTAGGGTCATGGAGTCGCGGTGGATT
TCGGTCCTTACCAGTAGGAGGGCTTCATTTTTTGTTTTTAGATGTTGTTTTGAATTTAGGTAGGGTTTTTGTCCTGCTTA
GAAAATGAGACGGCGACGGCTTCCCGAAGATGTAATAAGCTTCTCACTGCCTAGGCCCCGTTCCGGTGATGCTGCTAGTG
TCGTCGGAGGGTGTGTGG-----------------ATCTCGCGGGAGTTGATCGACCTTTGTCTTCGGTGGATCCGCTTG
GATCCAATCTTCGTTCATCTACGTTCGTGTGTCTACAGGTTAGATCGTTTCGATCTACGCTTTTCTTCATTGACGGCGGT
TACTGTTCTAGTGCATAGGTCCT-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S---------
----------------S------S-------------S------------------------------------------
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-S-----------------------S------------------------------------------------------
-S-------------------------------------S----------------------------------------
---S-------SS-------------SS-----S-SS-S----------S----------S---------SSSS--S-SS
SS--------------------------------------------S--------------S-------------S----
---S-SS-------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------S--S------------------------------------------------------S-------------
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-------------------------S--------------------------S---------S-----------------
--------------------------------S-----------------S-----------------------------
------------------------------------------------------------------------S-------
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---------------------------------------------S-----------S----------------------
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---------------------------------------S----------------------------S-----------
---------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS---------------------------------------------S------------S-------------
-----S-------S----------------------S---SSSSSSSSS-----------S-------S-----------
-S----------------------S-S----S--S----S----------------------------S-----------
---S-S------S--------S----------S---------S--S--------S--S---------------S------
-----------S------SSSSSSSSSSSSSSSSS-------S---S-S-S-------------S-SS------S-----
-----S------S---S------------------S-------------S------------S-------S---------
----------------S------SSSSS
>forward_145
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---------------------------------------------AGCATCTGAGGCTTGTGCAT---------------
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>reverse_1906
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-----------------------------------------------------------------TCCACACTGCAGTAC
ACGAC---------------------------------------------------------------------------
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