>input_sequence_77709
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-----------------------------------------------------ATGGAGGAGGAGGAGGCCGCCGGCGTG
AGGAAGCGGAAGCGCGGCGGGGAGGCCGTGGCCCTGGTGTCCGGCGGGGAGGCGGGGCTCGTCGAGGGAGGTGGTGGCTT
CTCCTGGAAGGAGGCGGAGATGGAGGAGGGGGAGGGGGAGGAGTACGAGGGCATCGCGGAGGAGTCGGTGGAGGAGGTGA
TGCGGTGGCTGGAGCTGGAGATCTCCTCCTCGCCGGGGAAGCCCGGCGGCGGCGACGACGGGTTCGTGACCATCAACGGC
AACGAGGAGAGCTGCGGCCCGTCCTTCTCCGCCGCGGCGTCCACCGTCATGGCCTCCGTGGACACGCGCGCGGGCGCCCC
GCCGCCCCCGACGGCCATCCCCTGGCCGTGGCCCGAGCCCAACAACGACACCACCAAGCCGGCGGCGGCGGACGGCAA--
-------CGACGACGACGCGGACATGGCGGAGCTCGTCGACGAGGAGTGGCTGGTGGAGCTGCTGACCGGCGGCGGGCCC
GCGCTGGAGGTAGAGTAG--------------------------------------------------------------
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>chr3A_1_TraesCS3A01G104700
CTTGCGATATAAAAAAACAGGTAGACTCTTATTGGGCCGGATAGGCCTGCCACTGGGCCAGTAACCCAGTAGTCCAGTTG
CCCCAGAGAAACCCTTTTCTTGCTCGCTTCCTTTCCATCCCCGGTGTGCAGCTTCTTTCTTAAAAAAAA-CAAGAGATAG
ACGTGCGCGCTCGTCTGACACTCGTGTAAAACCTCTCCCGGAAGGAACTTAACCGAAAGGGTAACGCGCCTGTACAGCTC
ACAAGGTTAATCTCGACT----AATCCTTGTCGTGCAAGACACGAAGGTGACGGCATGCAGGAGATCGGCGACGGTCCAA
AACAGCCCC-GCAGCTTTTGGCAACACCAAAGGCGCCAACGAAAACCGCCGCAGATAGAGCAAAACACACACACACACGC
CAGCTGGCCACAATCAATAC-----ACGACCCAGAGAAATGCTTCCCGAACCCCCGCGGTCCGTCCGTCCGTCCGTCGTC
TCCCACAAGCC---ACAGCG----------GCTGTGCGGCCTGGGGCTCTGGGCCTGCTGCGCTCGCCTCCGTCACGAGC
GCGAGATTGGGG---------TTCGTTTTCTGGCGAGAGCCCAACTGGCACCCACCCACGCCCCATCCACC-ATCCACCA
CGGGCCGAGCCACCGAGCGACGACGGTCAACAGCACCGACGAAGGAAGAAAGAAAG-------GGTTTCTTTCCCCACCC
GTCGCGTCCAAAAAAGCCGCGGTTCCCC------------------AGGGGAGAGCGCGCTACGCGCCAC----ACGCCA
CGCAG-----CGCGAACACGTCCTTTTCCTCGCGTAACGCCTCGAGGCCGCCGGATGCGC----------GCCCCCGAGG
CGGATCCGACGGCCCCGCGCCGCGCAGCGACGTCCCGCCCCCCGCCCTATATAAACCCACGTGGACGCTCCACCGCGCT-
-----CGCTATCCACCACCACGCCTCACTCCCCTCCTCCTCCACCTCTGCTTTCAGTTCCACTTGGCGGTTCCCTTCCTT
C---------CTCTGAGTCGGCTGCTGTGCCTGTGGGAGCACCGGTAGGGTGGATGGAGGAGGAGGAGGCCGCCGGCGTG
AGGAAGCGGAAGCGCGGCGGGGAGGCCGTGGCCCTGGTGTCCGGCGGGGAGGCGGGGCTCGTCGAGGGAGGTGGTGGCTT
CTCCTGGAAGGAGGCGGAGATGGAGGAGGGGGAGGGGGAGGAGTACGAGGGCATCGCGGAGGAGTCGGTGGAGGAGGTGA
TGCGGTGGCTGGAGCTGGAGATCTCCTCCTCGCCGGGGAAGCCCGGCGGCGGCGACGACGGGTTCGTGACCATCAACGGC
AACGAGGAGAGCTGCGGCCCGTCCTTCTCCGCCGCGGCGTCCACCGTCATGGCCTCCGTGGACACGCGCGCGGGCGCCCC
GCCGCCCCCGACGGCCATCCCCTGGCCGTGGCCCGAGCCCAACAACGACACCACCAAGCCGGCGGCGGCGGACGGCAA--
-------CGACGACGACGCGGACATGGCGGAGCTCGTCGACGAGGAGTGGCTGGTGGAGCTGCTGACCGGCGGCGGGCCC
GCGCTGGAGGTAGAGTAG------GGTAGGGCGCAGAGCGCTCGGGTAGGCAAGGCAAGGCAAGGCGCAAGCGTACGCGC
GTTTCCTTTTTCGGACGGTTGTACAGCGGGCAAGGGAAAAGCCAGGAAAAAAGAGAGCGGTGGCTCGTTTTGGCGCGGCC
CGGGTCGGTCGCATCGCTTTCTTCCGCGGCATGGGCGGGCAGCGGCAGCGATCGGTCCGTCCATCAATGCGGTCGGCCTT
GTGCGGTGGTGCGTTGAGGGGTGAGGTTGCGAGGAAATGGAAATGGTGCTC-----------------GCTGGCTGGCCC
-TTGTCGCGTTGCCTGCTTTTGCGTCCGGTTTCTACTGCTGGCCACTATGGCTCAGTTTTCCTGCTCCGTGACGCC-T--
TTTTCTCGCCTTGACTGGCCGATAGCGAATGGTGTTTGAA------TTCGATCGTACTCCTACGTGTT------------
--TCTTTCGCCAACCTACCCAACCCACACTCAAAAAAAAAAAGCAACCCAACCCACATTAAATCAGCTAGCGTCTACAGT
TAGTAGCTGTTAACCAATCTCAGAGTCCCGAGGA-------------------------------------------GTA
GTACTAAAATGAATCCAAGTTGGGTCGTGAAGTTAG----GCGTCTCGGCCGGAGCGTGAACTAATTTCCACCGGTGCAT
GTGGTGGTACGTTCATGTCCTTCGTAGTCTGGGCGCATTAGATTCC-----AAGAGGCAACGGTACGAAGCAGATGCAAC
AGGCAACATGGATAGCCATGAATCCGCGAGCGAGCGAGCACAGAGGTGGCGCGGGGCTCGGTGGTCTGTGGTTTCAGGTT
ATCATCAGCTTCCACGGCAGACTGCATGCATTGCAAGCAGCCTCCTGCGTGGAT----------AGTGCAGTGCAGGCTT
TACTTGCTTTCACTGTAGCAGTTTCAGGCTTCGGCCGCAGACAGCAGCACAGCAGAGCACACCACA-----GGTCAAAGG
CAGCACGTTTCATCACACATGCTGACATG----CATGCAGCTACCACCACTATCAG----GCCAGGCCTAGCCGCCGTGC
TTCTCATG-TTTGCTACAGAA
>chr3D_44
-------------------------------------------GGCCTGCTACTGGGCCAGTAACCCAGTAGTCCAGTTG
CCCCAGAGAATCCCTTTTCTTGCTCCCTTCCT-----TCCCCGGTGTGCAGCTTCTTTCCTAAAAAAAAGCAAGAGATAG
ACGTGCGCGCTCGTC-GACACTCGTGTAAAACCTCTCCCGGAAGGAACT--ACCCAAAGCGTATCGCGCCCGTACAGCTC
ACACGATTAATCCGGAGACACGAATCCTTGTCGTGCAAGACACGAAGGTGATGGCATGCAGGAGATCGGCGACGGACCTA
AACAGCCCC-GCAGCTTTTGGCAACAACAAAGGCGCCAACGAAAACCGCCGCAGATAGAGCGGA------ACACACGCAC
CAGCTGGCCACAATCAATACTACGTACGACCCAGAGAAATGCTACCCGAACCCTCGCGGTCCGTCCGTCCT--C------
-CCCGCACGCCACAACAACGGCGGTGCGGTGCGGCGCGGCGCGGGGCTCTGGGCCTGCCGCGCT----TCCGTCACGAGC
GCGAGATTGGGG---------TTCGTTTTTTGGCAAGAGCCCAACTGGCACCCACCCACGCCCCATCCCCC-ATCCACCA
CGGGCCGAGCCACCCAGCGACGACGGTCAACAGCACCGACGAACGGAGAAAAAGAAAGGGTTTGGTTTCTTTCCCCACTC
GTCGCGTCCAAAAAGGACGCGGTTCCCCAGAGGAGGAGAGGAGAGGAGAGGAGAGCGCGCTACGCGCCACGGCCACGCCA
CGCCGCGCGACGCGAACACGTCCTTTTCCTCGCGTAACGCCT-GAGGCCGCCGGATGCGCGCCGGGGCGTGCCCCCGAGG
CGGATCCGACGGCCCCGCGCCGCGCAGCCACGTCCCGCCCCACGCGCTATATAAACCGACGTGGACGCGGCAAGGCGCTC
CACCGCGCTATCCTCCACCACGCCTCACTCTCCTA-TCTTCCTCCTCTGTTTTCAGTTCCACTTGGCGGTTCCCTCCGCT
CGCGCAATCTCTCTGAGTCGAGTTCGTGGGAGTGGGG-----TGGTAGGGTGGATGGAGGAGGAGGAGGCCGCCGGCGTG
AGGAAGCGGAAGCGGGGCGGGGAGGCCGTCCTCGCCGTGTCCGGCGGGGAGGCGGGGCTCGTCGAGGGAGGCGGCGGCTT
CTCGTGGAAGGAGGCGGAGATGGAGGAGGAGGAGGGGGAGGAGTACGAGGGCATCGCGGAGGAGTCGGTGGAGGAGGTGA
TGCGGTGGCTGGAGCTGGAGATCTCCTCCTCGCCGGGCAAG------GGCGGCGACGACGGGTTCGTGACCATCAACGGC
AACGAGGAGAGCTGCGGCCCGTCCTTCTCCGCCGCGGCGTCCAGCGTGATGGCCTCCGTGGACACGCGCGCCGGCGCGCC
GCCGCCCCCGACGGCCATCCCCTGGCCGTGGCCCGAGCCCG---ACGACGACACCAAGGCGGCGGCGGCGGCGGCGCACG
GCGACGCCGACGCCGACGCGGACATGGCGGAGCTCGTCGACGAGGAGTGGCTGGTGGAGCTGCTGACCGGCGGCGGGCCC
GCGCTGGAGGTAGAGTAGGAGTAGGGTAGGGCGCAGCACTCGGGT-------AGGCAAGCCAAGGCGTAAGCGTACGCGC
GTTTCCTTTTTCGGACGGTTGTACAGCGGGCAAGGGAAAAGCCAGGAAAAAAAGG-GCGGTGGTTCGTTTTGGCGCGGCC
CGGATCGGTCGCATCGCTTTCTTCCGCGGCATGGGCGGGCAGCG------ATCGGTCCGTTCATCAATGCGGTCGGTCTT
GTGTG---GTGCGTTGAGGGGTGAGGTTGCGAGGAAATGGAAATGGTGCTTGCTGGCGGCACGATCCGGCTGGCTGGCCC
-TTGTCGCCTTGCCTGCTTTTGCGTCCGGTTTCTA----------CTATGGCTCAGTTGTCCTGTTCCATGCAACCTT--
TTTTCTCGCCTTGACTGGCCGATAGCGAGCGGCGTTTGAATTCGATTTCGATCGTACTCCTCCGTGCGTGC----TTCTT
TCTCTTTCGCCAACCTACCCAACCCACATTCAAATAGTAGTGAGAGTTACTAGTA--------------GCGTGTACAAT
CAGTCTGTGGTAACCAATCTCAGAGTCCCGAGGAAAGAAGACCTAACTATCTA---------------------------
------------AGCCAAGTTGAGTCGTGTTGGTAGGCGTGCGTCTCGGCCGGAGCATGGACTAATTTCCACCGGTACAT
GTAGTAGTGCGTTCGTGTCCTTCGTGGTCTGGACGCATTAGATTCC-----AAGAGGCAACGGTACGAAACAGATGCAGC
AGGCAACATGGATAGCCATGAATCCGCGAGCGAGCGAGCACAGAGGA-GCGCGGGGCTCGGTGGTCTGTGGTTTCAGGCT
ATCATCAGCTTCCGCGGCAGACTGCATGCAATGCAAGCAGCCTGCTGTGTGGATAGTGCAGCGCAGCGCAGTGCAGGCTT
TACTTACTTTCACTGTAGTGGTTTCAGGCTTCGGGCGCAGGCCGCAGCACAGCA----------CA-----TGTCAAAGG
CAGCACGTTTCATTAAGCATG----CATG----TATGCAGCTACCACCACTATCTATCTAGCCAGGTCTAGCCGCCGTGC
TTCATGTTTTTCGCTACAGAA
>chr3B_131
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--------------------------------------------------GCTTCTTTCCTAAAAAAAA-CAAGAGATGG
ACGTGCGCGCTCTTC-GACGCTGGTGTAAAACCTCTCCCGGAAGGAACT--AACCAAAGCGTAACGCGCCTGTCCAGCTC
ACAAGGTTAATCCGGAG----GAATCCTTGTCGTGCAAGACACGAAGGTGATGGCATGCAGGAGATCGGCGACGGATCAG
AACAGCCCCCGCAGATTTTGGCAACAACAAAGGCGCCAACGAAAACCGCCGCAGATAGAGCAAAACACACACT------C
CAGCTGGGCACAACCAATAC-----ACGACCCAGAGAAATGGTTCCCGAACCCTCGCGGTCCGCCCGTCCGTCC------
-CCCGCACGCC---ACAACGGCTGTGCGGCGCGGCGCGGCGC---------GGCCTGCTGCGCT----TCCGTCACGAGC
GCGAGATCGGGGGCGGAGCGTTTCGTTTTCTGGCGCGAGCCCAACTGGCACCCACCCACGCCCCATCCCCCCATCCACCA
CGTGCCGGGCGGGCGAGTGACCCCGGTCAACAGCACCGACGAACGGAGAAAAAGAAAGGGTTTGGTTTCTTTCCCCACCC
GTCGCGTCCAAAAAAGACGCGGTTCCCGA---GAGGAGAGGAGAGGAGAGGCGAGCGCGCTACGCGCCACGGCCACGCCA
CGCAGCGCGACGCGAACACGTCCTTTTCCTCGCGTAACGCCTCGAGGCCGCCGGATGCGCGCTGGGGCGTGGCCCCGAGG
CGGATCCGACGGCCCCGCGCCGCGCAGCCACGTCCCGCCCCCCACGCTATATAAACCGACGTGGACGCGGCCCGGCGCTC
CACCGCGCTATCCACCACCACGCCTCACTCTCCTA-TCCTCCTCCTCTGTTTTCAGTTCCACTTGGCGGTTCCC----TT
C---------CTCTGAGTCGGCTGCTGTG------GGAGCGCTGGTAGGGTGCATGGAGGAGGAGGAGGCCGCCGGCGTG
AGGAAGCGGAAGCGGGGCGGGGAGGCCGCGGTCGTCGTGGTGTCCGGCGAGGCGGGGCTCGTCGAGGGAGGCGGTGGCTT
CTCGTGGAAGGAGGCGGAGATGGAGGAGG------GGGAGGAGTACGAGGGCATCGCGGAGGAGTCGGTGGAGGAGGTGA
TGCGGTGGCTGGAGCTGGAGATCTCCTCCTCGCCGGGGAAG------GGCGGCGACGACGGCTTCGTGACCATCAACGGC
AACGAGGAGAGCTGCGGCCCGTCCTTCTCCGCCGCGGCGTCCACCGTGATGGCCTCCGTGGACACGCGCGCCGGGGCGCC
GCCGCCCCCGACGGCCATCCCCTGGCCGTGGCCGGAGCCCG---ACG---ACACCAAGGCGGCGGCGACGGCGTCAGCGG
CGGACGGCGACGACGACGCGGACATGGCCGAGCTCGTCGACGAGGAGTGGCTGGTGGAGCTGCTGACCGGCGGCGGGCCC
GCGCTGGAAGTAGAGTAG------GGTAGGGCGCTCGGGGAGTTGT-----------AGGCAAGGCGTAAGCGTACGCGC
GTTTCCTTTTTCGGACGGTTGTACAGCAGGCAAGGAAAAAGCCAGGAAAAAAAAG-GGGGTGGTTCGTTTTGGCGTGGCT
CGGGTCGATCGCATCGCTTTCTTTCGCGGTATGGGCGGGCACCG------ATGGATTCATTCATCAATGCGGTCGGTCTT
GCTT----GTGCGTTGAGAGGTGAGGTTGCGAGGAAATGGAAATGGTACTTGCTGGTGACACGATCGGGCTGGCTGGCTC
TTTGTCGCGTTGCCTGCTTTTGCGTCCGGTTTCTAG---------CTATGGCTCAGTTTTCCTGTTCCGTGCTAGAACCC
TTTTCTCGCCTTGACTGGCCGATAGCGAGCGGCGTTTGAATTCGATATCGATCGTACTACTCCTGCGTTTTGTTTTTCTT
TCTCTTTCGCCAACCTACCCAACCCACATTCAATCAG------------CTAGCG--------------GCGTGTACGAT
CAGTCTCTGTTAACCAATCTCAGAGTCCCGAGGAAAGAAGACCTATCTATCTACAGTAAGCAGGACTAGTAGTAGGAGTA
GTACTAAAATGAATCCAAGTTGGG----------AG----GCGTCTCGGCCGGAGCATGAACTAATTTCCGTCGGTACAT
---GTAGTGCGTTCGTGTCCTTCGTGGTCTGGACGCATTTTTTATATTCCAAAGAGGCGACGGTACGAAACAGATGCAGC
AGGCAACATGGATAGCCATGAATCCGCGAGTGAGCGAGCACAAAGGA-GCGCGGGGCTCGGTGGTCTGTGGTTTCAGGCT
ATCA---GCTTCCACGGCAGACTGCATGCAATGCAAGCAGCCTGCTGTGTGGACAGT-----GCAGCGCAGTGCAGGCTT
TACTTACTTTCACTGTAGTAGTTTCAGGCTTGGGCCGCAGGCCGCAGCACAGCA----------CAGCACAGGTCAAAGA
CAGCACGTTTCATTACGCATG----CATGCAGGCATGCAGCTACCACGACTATCAG----GCCAGGTCTAGCCGCCGTGC
TTCTCATG-TTTGCTACAGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------------------------
----------S--------------S------SSSSS----------------------S--------------------
---------------S---------------------------------SS---S----S--------------------
------------SS--SS---------------------------------S-----------------------S----
--------------------------S-------------------------------------------------S-S-
-----------------------------------------------------S--------------------SSSSSS
S---S--S---------S--------------S-S-----SS----------------------SSSS------------
--------------------------------------------------------------------S-----------
-------------------------------------------S-S-----S-S-S------------------------
----------------S-------------------------------S-------------------------------
--------------------------------------------------------------------------------
----------------------------S----------------S-----------S----------SS---S------
------------------------------S---SS------S------S-------------------------S-S--
-----------------------------SSSSS------S-S-------------------------------------
--------------S----------------S-S-S-----------------------------------S--------
---S-------------------------S--------------------------------------------------
-----------------------------------------SSSSSS---------------------------------
-----------------------------------------------S-----------------------S-----S--
----------------------------------------SSSS-----SS-------S------------SS-SSS---
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------------------------------------S----SS--SSSSSSS---------------S------------
----------------------------------------------------S--S-------S----------------
--------------------------------------------SSSSSS----------S---------------S---
---S-SSS------------------------------------------S-----------------------------
-----------------------------------SSSSSSSSSS-------------------S------SSS------
----------------------------SS--S----------------------------S----S-------------
----------------------------S-----S-SS-SSSSS-SSSSSSSS--SSSSSSSSSSSSSS----S----S-
S---SS--------------------------------------------------------------------------
-----------------------------SS-S-----------------------S-------------------S---
--S--S--S-----S----------S------S------------------------------------S--------S-
----------------------------------------------SS------------------------------S-
------------------------------S------------S---S------------------S-------------
-----S------------S---------------------S-S-----------SSSSSSSSSS----------------
-------------S--S----SSSS-----------------------------------------S-------------
---------------------
>forward_91
-----------------------------------------------------------------------GTCCAGTTG
CCCCAGAGAAA---------------------------------------------------------------------
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>reverse_1809
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------------------------------------------------CGATCGGTCCGTCCATCAAT------------
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