>input_sequence_77684
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--------------------------------------------------ATGGGGGGGCGTCGCCGCCGCAACAGCAGG
CGGGAGCACGCGAGCGCGCCGGAGGCCGGTGGTGACCGCGCTCTCCTCGAGAGGGAGGCGTCGGAGGGGGGAGAGATCCT
GAGGAGGAAAAAGGAGATGATGGAGGCGATGGCGGCCACGGATCTTTCACCGGGCACGAAGCCCGCGACGGAGCCGGCCG
GAGCCGGGAAGAAGAAAAGGAAGAAGATGGTGAAGACGAGGCTACCGCAGGCGCTCATCAAGCAAATGATGGCGAGCCCC
TACAGGCCCATGCCCATCCCCGACGACGAGCTGGCCAAGCGTCCCAGGTACTACCGCGAGTTCTACGCCACAGCCATGGA
TCGAGCCGACAAGGTCGCGGCCTACCAGCGGGCCCTCGTCAACCAGTACGTGGCCAGGGGCTACGCCGAGGACGAAGAGG
AGGTCACCGACGACGAGTCGGAGGAGAAC---------------------------------------------------
-----------------------------------TAGCCAGGGCAGCAGCAAGCAAAGGGGGGCATT------CAAGAT
GTTCATCGGCTCGTGCTGA-------------------------------------------------------------
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>chr4A_1_TraesCS4A01G328300
AATTAATGTAACCGAGGGCCCGAAGCATCAAAACAGAAGCAGACATGGTATCCGTCAGAGCATCTGAAATGGAGGCAAAA
CTGCTCCCGAAAAAAACATTTGTATGCACTGCCCAGAAGAATGTACTTATCAGGTTATCAAAACTGTCCATCTAGGGGAT
CTGTAACTCCCCAAGTAATTGTCAAATTCTGTTACTCACCATTCGGCAGATGAGACGCCATTGCTGATAATCCTTCTTCC
CGAACATGGCGACGTCAGGCTCGACGACGTTGAACAGCTTGGCGACGACGGTGGCCACCCCACGGAAGAACACTGGCCGG
CTGGCCCCACACAGCCCCTTCTCCAGCCGCTCCACCCGGATCCACGTCTCGTGCCCGTCCCCGCCCGCCTCCAGGCAGGA
AGAGGCCGCAGCGCCGCCCGGAGCCTCGGCGGGGCGGCCAGATACAGCGGCGCCGCGGTAGTACAGGTCTGGGGGGTTGA
AGACGGCGTGGACGGCGCCGGTGGAGGCGAGCTTGCGGAGGTCGCCGGCGAGGTCGGAGGGGTAGGTGGCGAGGTCCTCG
GTGGGGGCGAACTGGCTGGGGTTGACGTAGATGGAGACGACGACGGCGACGGGGCCGGGCACGGCCGCCGCGGCGGAGAC
GAGCGAGAGGTGGCCCTCGTGCAGGAAGCCCATGGTGGGCACGAGCACCACCGTCTTGCCCTCGGCGCGTTGCCGCCGCG
ACCACGCCCGCATCGCCGCCTTGTCCCGGATCACCTCCGGCTCGC---------CCGCCACCGCCGCCATGGGATTAGGA
GCAGGGCAGTC------GTCAGATGAGTCCAAGCGGGGAGCGGAGAAAGA------AGTCAAAGTTTT----GGAGGCGA
CGGGGAAGATGACAAGATTGCGGCGGC-CTTGTGGGGGAATCGAATCGGGAGACGAGAGCGAAAGAAGCGTTTTTTATTC
AAAAACAAGACAGCGACGGGTCCTGTTTTGGCGAACCGTCACGTTGCTTCCGTTCCGGCT--------------------
--------------------------------------------CGCTCGATGGGGGGGCGTCGCCGCCGCAACAGCAGG
CGGGAGCACGCGAGCGCGCCGGAGGCCGGTGGTGACCGCGCTCTCCTCGAGAGGGAGGCGTCGGAGGGGGGAGAGATCCT
GAGGAGGAAAAAGGAGATGATGGAGGCGATGGCGGCCACGGATCTTTCACCGGGCACGAAGCCCGCGACGGAGCCGGCCG
GAGCCGGGAAGAAGAAAAGGAAGAAGATGGTGAAGACGAGGCTACCGCAGGCGCTCATCAAGCAAATGATGGCGAGCCCC
TACAGGCCCATGCCCATCCCCGACGACGAGCTGGCCAAGCGTCCCAGGTACTACCGCGAGTTCTACGCCACAGCCATGGA
TCGAGCCGACAAGGTCGCGGCCTACCAGCGGGCCCTCGTCAACCAGTACGTGGCCAGGGGCTACGCCGAGGACGAAGAGG
AGGTCACCGACGACGAGTCGGAGGAGAAC---------------------------------------------------
-----------------------------------TAGCCAGGGCAGCAGCAAGCAAAGGGGGGCATT------CAAGAT
GTTCATCGGCTCGTGCTGAATAATTCCTAGTACTACAGTACATGTTATTTACCAATTACCACCCTGATGTTATTATCACA
CCTTAATTGCTAGTACTAGTGATCC------------CATTGCTATTTTGGCTGCAAGAAATTGGCATAACCTTGCCTCA
TTTCGGGGCACCAAATA-GCACGAAGTCGACAGGAAATTGCAGCAAAAGCATCACTAGAACACACATGATGACTACTACT
GTAGTTTTCTATGACAGCAAACAGCACATAATCATCATCATATAGTTCAACAATCCAGATCCACATTTAACTAAAGCATA
AAGTGAGTGACTAGTTACATAATAAACTCACCTGGTTCTGTGCTTCGCAGATTATGTAACAACAC-----------TTCA
GCCCAACGGCAACATCTTCTTTGGGGCCATCTTTTTCACCACTTTCTTTACATTTCTTTGTAGAGAAA------CAGCTG
CCTGGCTCTGAGATGCTGCAGCTAGTTGCCTGCATATATAAACACTTGTATTTCTTAGGAAGATTAAAAGTAAGATTTAG
TAGAG-CAGAAAGGTAAAAAT---------TACCTTCTAGTCACAGGCCCTGGGCTGGCTTTCAATGTTGCCGCACTTGC
GGTAATGAACAGCAGCAGCAGCTTCTACACATGCAGGTTCGTCTA--GCCAATCGACCATCTTTCAGAGATGTCTTCTTG
-------------------------------------------------------------CTCCTCCTTTCTTCCCGTG
AACAACAGATCACAAATG-----TTAGTAAATTTACATACAAGTATA-GAACAGTATCTGAAAAAACAGGTTT-GAATGC
CATTTTTTGAGACCTTCTCATGCCTTATCTCTGAATCAACTGATTGCCAACAAATCCCAGTGAGATCTTCAGCACCTCCA
CCAAGAGCATTGACAGCACCAAACATGCCTCCCAAATG-------GACAAGAAGAGGACACTGATGGGTGTATATATCAG
CACCA----------------ATACATTCTGAAACACAGCTCCAGATTTCCTGGGGTTCAGGAGTTCAGGAGTTTGGTGC
--------ACACAGGGCTCTAGGTTGGCATTCCTCTTTTC
>chr5D_193
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--------------------------------TACTTACCATTCGGCAGATGAGGCGCCACTGCTGGTAATCCTTCTTCC
CGAACATGGCGACGTCGGGCTCAACGACGTTGAACAGCTTGGCGACGACGGTGGCCACCCCACGGAAGAACACTGGCCGG
CTGGCCCCACAGAGGCCCTTCTCCAGCCGCTCCACCCGGATCCAAGTCTCGTGCCCGTCCCCGCCCGCCTCCAGGCAGGA
AGAGGCAGCGGCGCCGGCGGGAGCCTCGGCGCGGCGGCCAGAGACAGCGGCGCCGCGGTGGTAGAGGTCTGGGGGGTTGA
AGACGGCGTGGACGGCGCCGGTGGAGGCGAGCTTGCGGAGGTCCCCGGCGAGGTCGGAGGGGTAGGTGGCGAGGTCCTCG
GTGGGGGCGAACTGGCTGGGGTTGACGTAGATGGAGACGACGACGGCGACGGGGCCGGGCACGGCCGCCGCGGCGGAGAC
GAGCGAGAGGTGGCCCTCGTGGAGGAAGCCCATGGTGGGCACGAGCACCACCGTCTTTCCCTCCGCCCGCTGGCGCCGCG
ACCACGCCCGCATCGCCGCCTTGTCCCGGATCACCTCCGGCTCGC---------CCG---CCGCCGCCATGGGATCGGGA
GCAGAGCAGTCAAATTGGTCAGATGAGTCCAAGCGGAAGCG-------GA------AGTCAAAGTTTT----GGAGGCGA
CGGGGAAGATGATAAGATTGCGGCGGCT--TGCGGGGGAACCGAATC---------GAGCGAAAGAAGTGTTTTTTATTC
AAAAAACAAGACA-----------------GCGAACCGTCACGTTGCTTCCGTTCCGTCGGTCGATGCCAATGCGCACCT
GATCGCTGGGCCTTCCTCACCTCCGGTTAGGGCTCGAGCGACCGCGGGCGATGGGGGCCCGTCGCCGCCGCAACAGCAGG
AGGTCGGCGGCGAGCGCGCCGGAGAC------------CGCTGTGCTCGAGAGGGAGGCGCCGGAGGGGGGAGAGGTCCT
GAGGAGGAAGAAGGAGATGACGGAGGCGCTGGCGGCCATAGGCCTTTCACCGGGCACGAAGTCGACGGCCGGGAA-----
-------------------GAAGAAGGTGGTCAAGACGCGGCTAACGCAGGCGCTCATGGAGCATATGATCGCGAGCCCC
TACAGGCCCATACCCATCCCCGACGACGAGCTGGCCAGGCGTCCCAGGTGGTCCCGTGAGTTCTACGCCGCGGCCATGGA
TGGAGCCGACAAGGTCGCGGCCTACCAGCGGGCCCTCGTCGACCAGTACGTGGCCAGGGGCTACGCCGAGGACGAAGAGG
A-GGCACCGACGACGAGTCGGAGGAGAAC---------------------------------------------------
-----------------------------------TAGCAGCAACCA----AAGGGAAGGGGGTCATC------CCAGAT
GTTCATCGGCTCGTGATGAATAATTCCGC---CTACAGTACATGTTAT-------TTACCACCCTGGTGTTATTATCACA
CCTTAATTGCTA---CTAGTGATTC------------CATTGCTATTTTGGCAGCAAGAAATTGACATGACCTTGCCTCA
TTTTGGGGCACCAAATA-GCAC-------ACAGGAAATTGCAGCAAAAGCATCACCAGAACACACATGATGACTACTACT
--AGTTGTCTATGACAGCAAACGGCACATAATAATCATCATGTAGTTCAACAATCCAGATCCACATTTAACTAAAGCATA
AAGTGAGTGACTAGTTACATAATAAACTCACCTGGTTCTGTGCTTTGCAGATTATGTAACAACACCACAGCAACAGTTCA
GCCCAACAGCAACATCTTCTTTGGGGCCATCCTTTTGGCCACTTT----ACATTTCCTTGTAAGAGAAATACAGTAGCTG
CCTGGCTCTGAGATGCTGCGGCTAGTTGCCTGCATATATAAACACTTGCATTTCTTAGGAAGATTAAAAGTAAGATTTAG
TGGAG-CAAAAAGGTTTAAAAAAAA-----TACCTTCTAGTCACAGGCCCTGGGCTGGCTTTCAATGTTGTTGGTGTACA
C----TGAAAAGCAGCAGCACCTTCTACACATGCCGGTTCATCTATTGCCAATGGACCATCTTTCAAAGATCCCTTCAGG
TTATGTAACAACAGCACAGCAACATTCAACCCCAAGAGCAACATCCTCTTGGCCTTTTGCTCTTCCCTTTTCTCCCTGTG
AATATCAGATCACAAATACAGTATTAGTAAATTTACATAGAAGTATA-GAGCAGTATCTGGAAAAACAGGCCT-GAATGC
CATCTTTTGAGACCTTCTCATGCTTTATCTCTGAATTCATTGATTGCCAACAGACCCCAGTGAGATCTCCAGCACCCGCA
GCAAAAGC---GACAGCACCAAACATGCCTCCCACCAAAATCCCAGACAAGAAGCGGAATCTGATGGGTGTATATATCAG
CACCAACACATACATCAATCAATAAATTCTGAAAAACAGTTCCAGATTTCTTGTGGTTCAGGAATTCAGGAGTTCCGTGC
--------ACACAGGGCTCTAGGTTGGCATTCCTCTTTTC
>chr5B_195
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----------------------------------CTTACCATTCGGCAGATGAGGCGCCACTGCTGATAATCCTTCTTCC
CGAACATGGCGACGTCGGGCTCGACGACGTTGAACAGCTTGGCGACGACGGTGGCCACCCCGCGGAAGAAGACTGGCCGG
CTGGCCCCACACAGCCCCTTCTCCAGCCGCTCCACCCGGATCCACGTCTCGTGGCCGTCCCCGCCCGCGTCCAGGCAGGA
GGGAGCCTCGG---------------CGGCGCGGCGGGCAGAGACAGCGGCGCCGCGGTGGTAGAGGTCCGGGGGGTTGA
AGACGGCGTGGACGGCGCCGGTGGAGGCGAGCTTGCGGAGGTCCCCGGCGAGGTCGGAGGGGTAGGTGGCGAGGTCCTCG
GTGGGGGCGAACTGGCTGGGGTTGACGTAGATGGAGACGACGACGGCGACGGGGCCGGGCACGGCCGCCGCGGCGGAGAC
GAGCGAGAGGTGGCCCTCGTGGAGGAAGCCCATGGTGGGCACGAGCACCACCGTCTTGCCCTCGGCGCGTTGGCGCCGCG
ACCACGCCCGCATCGCCGCCTTGTCCCGGATCACCTCCGGCTCGCCCGCCGGCGCCG---CCGCCGCCATGGGATCGGGA
GCAGAGCAGTC------GTCAGATGAGTCCAAGCGGAAGCG-------GAGAAAGAAGTCAAAGCTTTGGAGGGAGGCGA
CGGGGAAGACGATAAGATTGCGGCGGCTCTTGTGGGGGAATCGAATCGGGAGACGGGAGCGAAAGAAGTGTTTTTTATTC
AAAAACAAGACGGCGACGGGTGTTGTTTTGGCGAACCGTCACGTTGCTTCCGTCCCGTCGGTCGATGCCAAAGCGCACCT
GATCGCCGGGTCTTGCTCGCCTCCGGTTAGGGCTCG------CGCGCTCGATGGGGGGCCGTCGCCGCCGCAGCAGCAGG
CGGGAGCAGGC----------------------GACCGCGCTCTCCTCGAGAGGGAGGCGTCGGAGGGGGGAGAGATCCT
GAGGAGGAAAAAGGAGATGATGGAGGCGATGGCGGCCA------------------------------------------
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----------------------------------------------------------------------CAGCCATGGA
TCGAGCCGACAAGCTGGTGGCGTACGAGCGGGCGCTCATCGACCAGTACGTGGCCAGGGGCTACGCCGAGGACGAAGAGG
AGGTCACCGACGACGATGAGGAGGATAAGAAGTACTCCCTCCGTAAACTAATATAAGAGTGTTTAGATTACTACTTTAAT
GATCTAAATGCTCTTATATTAGTTTACAGAGGGAGTAGCTATGGCAGCAGCAAGCAAAGGGGGTCAATAATTTGCAAGAT
GTTCATCGGCTCGTGCTGAATATTCGTACTA-------TACATGTTTT-------TTACCACCCTGATGTTATTATCAC-
-CTTAATGGCTA---CTGGTGATTCTCATGAGCAATGCAATGCTATTTTGGCAGCAAGAAATTGGCATGACCTTGCCTCA
TTTTGGGGCACCAAATCGGCACGGATTCGACAGGAAATTGCAGCAAAAGCATCGCTACAACACACATGATG---ACTACT
--GGTTCTCTGTGACAGCAAACAGCACATAATAATCATCATATAGTTCAGCAATCCAGATCCACATTTAACTAAAGCATA
ATGTGAGTGACTAGTTACATAAAC-ACTCACCTGGTTCTGTGCTTCGCAGATTACGTAACAACAGCACAGCAACAGTTCA
GCCCAGCAGCAACATCTTCTTCGGGGCCATCTTTTTCGCCACTTTTTTTACATTTCTTTGTGCACAAA------TAGCTG
CCTGGCTCTGAGATGCTGCAGCTAGTTGCCTGCATATATAAACACTTGTATTTCTAAGGAAGATTAAAAGTAAAATTTAG
TAGAGACAAAAAGGTAAAAATAAATAAATATACCTTCTAGTCACAGGCCCTGGGCTGGCTTTCAGTGTTGTTGGTG----
-------------------------TACACATGCAGGTTCGTCTATTACCAATGGACCATCTTTCAAAGATCCCTTCAGC
TTATGTAACAACAGCACAGCAACATTCATCCCCAAGAGCAACATCCTCTTGGCCTTTTGCTCTTCCCTTTTCTCCCTGTG
AATATCAGATCACAAATACAACATCAGCAAATTTACATAGAAGTATAGGAGCAGTATCTGGAAAAACAAGGCCCGAATGC
CATCTTTTGAGACCTTCTCATGCTTTATCTCTGAATACATTGATTGCCAACAAATCCCAGTGAGATCTCCAGCACCCACA
CCAAAACC---GACAGCACCAAACATGCCTCCCACCAAAATCCCAGACAAGAAGCGGAATCTGATGGGTGTACATATATG
--------------TCAATCAATAAATTCTAAAAGACAGCTCCAGATTTCTTGAGGTTCAGGAGTTCAGTAGCCAAAGAA
ACTCGTCAACACAAGGCTCTAGGTTGGCATTCTTCTTTTC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-----------------S-----S-------------------
----------------S---------------------------------------------------------------
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---------S------S-S------------S----------S----------------S---S----------------
-------------------------------------------S------------------------------------
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---------------------S--------------------------------------------------S-------
---------------------------------------------------------SSS---------------SS---
----S-------------------------------SSSSSSSSSSSS--------------------------------
------------S------------------------------------------S------------S-----------
-----------S---------SS----------------------------------S-S--------------------
----------------------------------------------------------S---------------------
--------S---------------S-SSSSSSS-----------------------------------------------
--------------------------------------SS-SS------------------S-SS--S-S-S-SSSSSSS
SSSSSSSSSSSSSSSSSSS-------S----S------S-----S-------------SS----S-----S---------
-----------S-------------------------S-----------SS-S---S------------S----------
----------------------------------------S---------------------------------------
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---------------------------------------S-S---------------------S----------------
---------------------------SSSSS----------------SSSSSSS-------------------------
------------SSS--------S----------------------------S---------------S-----------
---S-------------------S-S------------------------------------------------------
SS----S-------------------------S-----------------------------------------------
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-------S-----------------------------S-------S----------------S-S---------S-----
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--------S-------------------------------------------------------------SS-SSS-SSS
SSSSS----S----------S--------------------------------S------------S----SS----SS-
---------------------------------------------------------------S-S-S-----S--S---
--S-S------------S---------------------S----------S---------S---------SS--------
---S-------------------S------------SS-S----------------------------S-------SS--
----S---SSS-----------------------SSSS----------------S---SS--------------------
------------------------S---------S---------------S--S--------------------SS----
----------------------------------------
>forward_36
----------------GGCCCGAAGCATCAAAACAG--------------------------------------------
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>reverse_2088
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-------GGCAACATCTTCTTTGGGGC-----------------------------------------------------
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