>input_sequence_77669
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---------------ATGGCCCT------------CAGGGTTGCTCCGTCGCCGCTCCTCGCCTCCGGCGGCGGTGCCAC
CGCCTTCACTACCCCGCTTACGCCCAAGAAGAGAGGCGCCGGCCTGCTCCTCCTAAGCAAGCGCTCCAGGATCTCCGCCC
AGCTCGGTACCCACGATTCCTCCTCAATTTCTCTTATGTTGCATTTTGTTTGAGTCCGTAT--GCTACCCATGTATATGC
A---GGTGGTGGAGGTGGTGG---TGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACAGGAACCAG
AGCAGTAAGG----------------------------------------ATGAGTTGATGTATGTGTGTGTG-TGTGGC
CAATTGCCAAATGGTGTGGATAAAATGGATGATGATG-ATGATGTAGGTACTGGCAGACTGCCGGGGAGAGGAAGGGGGA
GAACCCCATGATGACGCCGCTGCCCTACATTGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCATCGCCTTCG
CCAACGGATGGATCAAGGCGCCCCTCATCCGCTGA---------------------------------------------
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>chr5B_1_TraesCS5B01G478600
AAGAGCAATAGTGAATGAACATTTTCTTTTTAGGAATACAATAGTAAATGAACAGAAAACTAGGAAAAAGCTGCTACGGC
TCTTAAGGCCCACACGCCTATCTCTCGTCATTCAGCCCATATAGGAGCAAAGTCAAGCCCAACGAGACGTAGTACCTCCC
AGCCAGACTGCGCGCCTCC----CTCCCTTCACGGCTTCACGCCTGCCGCTGCTGTTGCGCTTCGGTTTTTAGTCCCACC
TCGCTCAGCGGAGAGCATCGAGCGGGGGAGCTGGCTATAAGAGGAGGGCGAGGTGCAGCGTTGTTCCATACTTACCTGGA
CGGGGTCGACGGGCGATCAATAAGGCCCGTGGCCTGGGTCAGTGGCCCACATTGCACTTGGTGGGTGCGCTGGCCCACCA
TCTCCCCAAGTGGGAGAGTGGACGTCATAATTTGTGGTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAATTCTGTAAA
ATTAAATTTTGGTCCTT---------------------------------------------------------------
GGTCTGGCCTGCTTAGTGCAGCTGT--TTTTACAACCCAGTACTCGGTCAGGTACTGG-------GAGGCAGCCAACAGC
AAATCTCATTTGTTTTACACCTTCGATCACACATGAACGAGAGAGGCAAAGGTGTTCTTTGAGCAAACAAAAAAAAGTAA
TGGTT--------------------TGAACTTCTGGTCCAAGTTTTCTTTTAGCAACATGAACG--ACCTAACATATAAA
TCTGGTGCTGTCA--GGTTGTATATGTTGGTGTTCTTCAGCTTCTGCTTACAACCAAGTGAAATTTGGCAAGAAATTCAC
TTTTCACACGCAGAAACACCCAGATAAATTCGAGAACTTTTTTT------------------------------------
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---------------------------------------------------------------------------TGCAA
CTGTAAATTCAAGAACTTAAATCTGCCACGGAAGGGAAGACAACACGGCTGGCTGGTGGATAAGGCGAGTGCTACGCGGC
CGAAAGGTGAGGGG--GAGT--TATAGGGTGCGTGGTGCATGAGGCAGGAGAGCTCTTTTCCTCCTCCACACAGACCAAC
CCAGCAACAGCCACCATGGCCCT------------CAGGGTTGCTCCGTCGCCGCTCCTCGCCTCCGGCGGCGGTGCCAC
CGCCTTCACTACCCCGCTTACGCCCAAGAAGAGAGGCGCCGGCCTGCTCCTCCTAAGCAAGCGCTCCAGGATCTCCGCCC
AGCTCGGTACCCACGATTCCTCCTCAATTTCTCTTATGTTGCATTTTGTTTGAGTCCGTAT--GCTACCCATGTATATGC
A---GGTGGTGGAGGTGGTGG---TGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACAGGAACCAG
AGCAGTAAGG----------------------------------------ATGAGTTGATGTATGTGTGTGTG-TGTGGC
CAATTGCCAAATGGTGTGGATAAAATGGATGATGATG-ATGATGTAGGTACTGGCAGACTGCCGGGGAGAGGAAGGGGGA
GAACCCCATGATGACGCCGCTGCCCTACATTGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCATCGCCTTCG
CCAACGGATGGATCAAGGCGCCCCTCATCCGCTGAGCTCTCATCGGGCTCTCGTCCTTCCCCTTCCGGCGAGAGAGATGA
TGACTTGCTTCCCTTCTATAGAGATTACTGTAAAGCTGTATGTA----ATTCATTTCTTCGAAGATCTTTATATAGTGGA
GTCACCAGCTGCTCTG----CATTCATGACTGCACCTGGTCTTGCATATAGAGTGAAAAGCCCTGTATTTGTTAAGCTTG
TGAACACTTTCCACAGTTCAAGATCGATCGATCGATCAAGAAACTGGGGGGAAAAAATATAGAATGGCATCGGTGCCAGC
GATTAAAAATTTCAACCAAGGAGGCAAGAATCTACACATAAGCACATACAATACAACATGCCACCGCTACAGATTCATCT
CACGTCAGACATAC------------------AACAAACAACTAA----------------ACCATAGAATACCATTGGC
TATTTCTTCTCATAAACTTGCAGATAACAAAGACATGTTTTTGGGGCCTAGCCAATAGCCCGCAGCAGTATACAGTTAAA
GCGTTTGCGCAAACGGACACATCATATGGCAGCCACCTAGCTAGCGCGGTTTCCTATCAAACTCTGACTCACGACAGTGT
GGGTCAAGCCAGTCGCGACGGGAACTCTTCGCCATGCCCCTACTATCTGTTGTCACAGCCCCCATGAGCTCTCTTAGGCT
TTCCACCTTGTTCTCCTGAGCATTGCCACTGGATTTCCTATCTGCTTCCTTCAGCTTGTTTCTGAAACTCTGCTTACGGC
CAACTGTGTTAAGTTGCTGCTGCTTTGCTCCTGATGGTGGCGCCCCATGAGGTCCCAGGTATATCTTCTCCTCTTTAGCC
TGTTCATTCAAATACGAATTTACATCTCAATGAACTAATTCAAACCACTGCGCTATCCAAGTAGTTGTTCAAGTTGCATG
AACTGAAAGTCAAGTCTCATGATGGACATTGCGGCGAAAAGATCTGGAACTCGCCTGCTGAGGTTCAGGATCCCTTGCTT
TGGGGACACTGTGTGTAGTAACAGCATCATCATCATC
>chr5D_39
--------------------------------------CAATAGTGAACGACCAGAACACTGGGAAAAAGCTGCTACGGC
TCTTAAGGCCCACACGCCTATCTCTCGTCATTCAGCCCATACAGGAGCCAAGTCAAGCCCAACGAGACGTAGTACCTCCC
GTACCGTGACT------------CTCCCTTCACGGCTTCACGGCTGCCGCTGCTGCTGCGCTTCGGTTTTTAGTCCCACC
TCGCTCAGCGGAGAGCAACGAGCGGGAGAGCTGGCTATAAGAGGAGGGCGAAGTGCAGCGTTGTTCCATACTTACCTGGA
CGGGGTCGACGGGCGATCAAGAAGGCCCGTGGCCTGGGTCAATGGCTCACATTGCACTTGGTGGGTGCGTTGGCCCACCA
TCTCCCCAAGTGGGAGAGTGGACGTCATAATTTGTGCTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAATTCTTTGAA
ATTAAATCTTGGTCCTTTTGTGGTAGAGGGTAGACGAGTACGCGCGGCCCCTGCCAATCTTTGAAATTAAATCTTAGTCC
TGTTTCGCTGGCTTACGAAGTCA---GTTTTACAATCCAGTCCTTGTTCTGGTTCATCTGTTGCACACATCGACGGG---
----------------------------------------GAGCCAGCAACGTGTTCTCCGAACAGAGAAAAAGAAGATT
TCATA-------GGCTGGAGGGTTCTGATCCAAG---------TTTCCCTGAGCAACATGAACGGCGTATAACATCTGAA
ACTTGGGCTGTCC--GGTCGTATATTCTGGTGTTCTTCGCCTCCCGCTTACAACTAAGTAAAAATTGGCGACAAATTCAC
TTCTGCACTACTCTACTAGATATAG-------------------------------------------------------
------------------------------------------------------------TAGGGATGAATAAAGTCACT
GCAGTCTTGAGCTTATTATAACCTGTCAGTTCAGACTTCAGACAGAGACAAGCACCCCGAGTCCAGCTTTAGCCTGAAAC
AAAGTGAAATACCAACAACTTCACAATCATATGTGTCACCAACCAAGTTTGCCGGCTACCAGTTCTCTGTGGTGAGCTGA
AAAAACAACACTCCGCAAAACTCATGTGCATCTGGAGCTGGCAGCTGCCGTATATTCTGGTCCTGTTCACCTTAATATTA
CAATCAAGTAAGATTTGGCCAGAACTGAACTTCTAAACATGTAGGTAGA---GATTGAAGTCGCCGTCAGTTCAAGTAGA
GACAAGCACCCCCACACAGTTTAGCATTT---------------------------------------------------
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--------------------------------------------------------------------TGACCAGTGTAA
ATGTAAATTCAACAACTTAAATCTGCCACGGAAGGAAAGATAATACGGCTAGCTCGTGGATAAGGTGAGTGCTACGCGGC
CGAAAGGTGAGGGG--GAGTGCTATAGGGTGCGTGGTGCATGAGGCAGGAGAGCTCTTTTCCTCCTCCACACAGACCAAC
CCAACAACAACCACCATGGCCATGGCCTCCGGCTCCAGGGTTGTTGCTCCGTCACTCCTCGCCTTCGGCGGCGGCGCCAC
CACCTTCGCTACCCCGCTTGCAGCATCCAAGAGAGGCGCCCG------CCTCGTAAGCAAGCGCTCCAGAATCTCCGCGC
AGCTCGGTACCCACGATTCCTCCTCAACTTCTCTTATGTTGCATTTTGTTTTGAGTCC-ATAAGCTACGCGTG--TATGC
AGGTGGTGGTGGTGGTGGTGG---AGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACAGGAACCAG
AACAGTAAGCAAGCGTGCATGTGCATCCATCAGCTCTCATCATC-ATATCATGAGTTCATGTATGTGTGTGGTCTGTGGT
CAATTGCCAAATGGTGTGGATAAAATGGATGATGATG-ATGATGTAGGTACTGGCAGACTGCTGGGGAGAGGAAGGGGGA
GAACCCCATGATGACGCCGCTGCCCTACATCGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCATCGCCTTCG
CCAATGGATGGATCAAGGCGCCCCTCATCCGCTGAGCTCCGGTCGAGCTCTCCTCCTTCCCCTTCCGGCGAGAGAGACGA
TGACCTGCTTCCATTCTATAGAGATTACTGTAAAGCTGTATGTATGTAATTCATTTCTTCAGAGATCTTTATATAGTGGA
GTCACCGGTTGCTCTACATACATTCATGACTGCATCTGGTGCTGCATATAGAGTGAAAAGCCCTGCATTTGTTGAGCTTG
TGAACACTTTCCACAGTTCAAGATCGATCGATCAAGAATTT-------GGGGAAAAAGATATAATGACAACGGTACCAGC
AGCTACAGATTTCAACCAAGGAGGCAAGAATCTACACATAACCACATACAATACCACATGCCACCGCTACAGATTCATCT
CAAGTCAGACATAC------------------ATTCTAGCAAGATTCATGAGAGTCTGCATACCATAGAATACCGTTGGC
TATTCCTTCTCATAAACTTGCAGATAACAAAGACATGTTTTTGGGGCATAGCCAGTAGCCCACAGCAGTATACAGTTAAA
GATTTTGCGCAAAAGGACACATCATATGGCAGCCACCTAGCTAGCGCGGTTTCCTATCAAACTCCGACTCGCGACAGTGT
GGGTCAAGCCAGTCGCGACGAGAACTCTTCGCCATGCCCCTACCATCTGTTGTCACAGCCCCCATGAGCTCTCTTAGGCT
TTCCACCTTGTTCTCCTGAGCATTGCCACTGGATTTCCTATCTGCTTCCTTCAGCTTGTTTCTGACACTCTGCTTACGGC
CAACTGTGTTAAGTTGTTGCTGCTTTGCTCCTGATGGTGGCGCCCCATGAGGTCCCAGGTATATCTTCTCCTCTTTAGCC
TGTTCATTCAAATACGAATTTACATCTCAATGAACTAATTCAAACCACTGCGCTATCCAAGTAGTTGTTCAAGTTGCATG
AACTGAAAGTCAAGTCTCATGATGGACATTGCGGCGAAAAGATCTGGAACTCGCCTGCTGAGGTTCAGGATCCCTTGCTT
TGGGGACACTGTGTGTAGTAACATCATCATCATCATC
>chr5A_59
----------------------------------------------------------ACTGGGAAAAAGCTGGTACGGC
TCTTAAGGCCCACACGCCTATCTCCCGTCATTCAGCCCATGTAGGAGCAAAGTCAAGCCCAACGAGACGTAGTACCTCCC
G----GACTGCGCGCCTCCCTGGCTCCCTTCACGGCTTCACGCCCGCCGCTGCTGCTGCGCTTCGGTTTTTAGTACCACC
TCGCTCAGCGGAGAGCATCGAGCGGGGGAGCCA-CTATAAGAGGGGGGCGAGGTGCAGCGTTGTTCCATACTTACCTGGA
CGGGGTCGACGGGCGATCAAGAAGGCCCGTGGCCTGGGTCAATGGCCCACATTGCACTTGGTGGGTGCGTTGGCCCACCA
TCTCCCCAAGTGGGAGAGTGGACGTCATAATTTGTGGTAGAGGGGGTACGCGTTCGCGCGGCCCCTGCCAATTCTTTGAA
ATTAAATCTTGGTCCTC---------------------------------------------------------------
TGTTTGGCTCGCTTACGAAGGAGTATGTTTTACAATCCAGTCCCTTGTCTGGTTGTTG-------CACATCGAGAGG---
----------------------------------------GAGCCGGCAACGTGTTCTCTGAACGGAGGAAAAGAAGATT
TCAGTATGGGCTGGATGGAGGGTTCTGAACTTCTGATCCAAGT---------------------GCATGTAACATCCGAA
TCTTGTGCTGTCAGAGGTTGTATATTCTGGTGTTCTTCACCTCCCGCTTACAACTAAGTAAATTTTGGGAACAAACTCAC
TTCTGCGCTACTCCCTCCGTTCCGAATTACTTGTCTTAGATTTCTCTAGATACGGATGTATTTAGCACTAAAATAAGTCT
AGATACACCTGTATCTAGACAAATCTGAGACAGGTAATTCGGAACGGAGGGAGTACTAGATAGGGATGAATGAAGTCACT
GCAGTCTTGAGCTTATTATATAACCTGACAGTTG-----AGACAGAGACAAGCACCCCGAGTCTAGCTTTAGCCTGAAAC
TAAGTGAAAGACCAACAACTTCACAATCATACGTGTCACCAACCAAGTTTACTAGCTACCAATTCTCTGCGGTGAGCTGA
AAAAACAACACTCCACAGAACT--------------------------CGTATATTCTGATCCTCTTTACCTTAATATTA
CAATCAAGTAAAATTTGGCAAGAACTGAACCTCTACACGTGTGGATAGACCCGATTGAAGCCACTGTCAGTTGAGGCA--
---------CCCCACACAGTTTGGCATTTCGCCGCGACAAGTTCCTGACACGATACCTTGGCTCTAGTCTCATTTGCTTA
GCATGAAACTGATTGAACGGCCACACAGTTTAGAATGTCTCCACCAAGAGTTACTACCAACATGCCAAAAGTAACTGTGG
CATCCAGTGTTGATCAGGAGATGTGAGCTGGGTGGCAAAAGAGTGTATACATCCGTCGGCCGGTAGTTTGACCAGTGTAA
ATGTGAATTCAAGAACTTAAAGCTGCCACGGAAGGGAAGATAGCACGGCTGGCTGGTGGATAAGGTGAGTGCTACGCGGC
CGAAAGGTGAGGGAGTGAGTGCTATAGGGTGCGTGGTGCATGAGGCAGGAGAGCTCTTTCCCTCCTCCACACAGAACAAC
CCAACAACGACCACCATGGCCCT------------CAGGGTTGCTCCGTCGCCGCTCCTCGCCTCCGGCGGCGGTGCCAC
CGCCTTCGCCACCCCGCTTACGCCGAGGAAGAGAGGCGCCGGCCTGCTCCTCGTAAGCAAGCGCTCCAGAATCTCGGCGC
AGCTCGGTACCCACGATTCCTCCTCAATCTCTCTTATGTTGCATTTTGTTTGAGTCCATATACGCTACGCGTGTATATGC
AGGTGGTGGTGGTGGTGGTGGTGGAGATGGAGAGACCAAGCCTGACGGCAAGAAGTTCATCACCAGAGAACAGGAACCGG
AGCAGTAAGCAAGCC------TGCACCCATCAGCTCTCATGATCCATATTATGAGTTCATCTATGTGTGGTCTGTGGT--
-------CAATTGGTGTGGATAAAATGGATGATGATGGATGATGTAGGTACTGGCAGACTGCTGGGGAGAGGAAGGGGGA
GAACCCCATGATGACGCCGCTGCCCTATATCGTCATCTTCGGCTTCTCCACCCCCTTCATCATCCTCGCCATCGCCTTCG
CCAACGGATGGATCAAGGCGCCCCTCATCCGCTGAGCTCCGGTCGAGCTATCCTCCTCCCCCTTCCAGCGAGAGAGATG-
--ACTTGCTTCCATTCTATAGAGATTGCTGTAAAGCCGTATGTA----AATCATTTCTTCAGAGATCTTTATATAGTGGA
GTCACCGGCTGCTCTG----CACTCATGACTGCATTTGGTTCTGCATAGAAGCG--AAAGCCCTGTGTTTGTTAAGATTG
TGAGCACTTTCAACAGTTCAAGATCGGTCGATCAAGCAATT-------GAGGAAAAATATAGAATGGCGTCGGTACCATT
AACATCAAATTTCAACAAGGAGGCAAAGAATCTACACATAAG------------CACATGCCGCCGCTACAGATTCATCT
CAAGTCAGACATACAACAAACAACTAAACCACATTCTAGCAAGATTCATGAGATTCTGCATACCATAGAATACCATTGGC
TATTTCTCCTCATAAACTTGCAGATAACAAAGACATGTTTTTCGGGCCTAGCCAGTAGCCCACAGCAGTATACAGTTAAA
ACTTTTGCGCAAACGGACGCATCATATGGCAGCCACCTAGCTAGCGTGGTTTCCTATCAAACTCAGACTCACGACAGTGT
GGGTCAAGCCAGTCGCGACGAGAACTCTTCGCCATGCCCCTACTATCTGTTGTTACAGCCCCCATGAGCTCTCTTAGGCT
TTCCACCTTGTTCTCCTGAGCATTGCCACTGGATTTCCTATCTGCCTCCTTCAGCTTGTTTCTGAAACTCTGCTTGCGGC
CAACTGTGTTAAGTTGCTGCTGCTTTGCTCCTGATGGTGGCGCCCCATGAGGTCCCAAGTATATCTTCTCCTCTTTTGCC
TGTTCATTCAAATACGAGTTTAC--------------------ACCACTGTGCTAGCCAAGTGGTTGTTCAAGTTACATT
TACTGA--------TCTAACGAGGGACATTGCGGCGAAAAGATCTGTAACTCGCCTGTTGAGGTTCAGGATCCCTTGCTT
TGGGGACACTGTGTGTAGTAACATCATCATCATCATC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S--S-----S---S------------------
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SSS-S--------------------------------------------------S------------------------
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--------------------S--------------------S---------------------------S----------
---------------------------------------------------------------------------S-S--
-------S------------------------------------------------------------------------
S--S----SS-----SSSSS--SSS----------S-----S--S----S---S--S--------S-SSSS-S--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---SS-SS--S-------S---S--S-S-----S---SSS
-SS--------------------------------S-----------SS-S----------------SS------S-S--
---S---------------------SS------------S--S-S---------S----S-----------S--------
--S-SSSSSS-SSS-S--SSS-S-S-SSSSSSSSSSSSSS---S------------------------------------
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-----------------------------------------------------------------------------S--
S---------------------------------------S------------------------S--------------
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---S-----S----------------------------------------------------------------------
-------S----------------S-S-------------------------S----------------S--------S-
---------------------------------------------------------S----------S-S---------
------------S-----------S-------------------------------------------------------
---------S-----------------------------------------------S-------------SS------S
--------------------------------------------------------------S-----------------
------------------------------S-------------------------------------------------
---------------------------------------SSS---S------S---------------------------
------------S-----------------------------------------------SS------------------
------S---------------------------S-----SS--------------------------------------
---------------------------------S-S---SSSSSSSSS---S----------------------S-----
S-S--S------------------------------------------------S-------------------------
--S------------------------------SSSS-SS-SS-S-----------------------------------
------------------------------------------------------S------S------------------
--S-------------------------------------------------------------S---------------
--------------------S-----------------------------------------------------------
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-----------------------S-------------
>forward_578
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------------------------------------------------------------------------------TT
GGTCTGGCCTGCTTAGTG--------------------------------------------------------------
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>reverse_2695
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------------------------------------------------------AACATGCCACCGCTACAGAT------
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