>input_sequence_77664
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-----------------------ATGGCAGCTCGCCGTGCCCACGCCGCGGCGGCCTTGGCCCTGCTGGTGGCGGCGCTC
GTGCTGTCTGCGGCACCGGCGCCGGCCGAGGGTGCGGTTGCGAACTGCGGCCAGGTGGTGAGCTACCTGGCCCCGTGCAT
CAGTTACGCCATGGGCAGGGTGAGTGTGCCTGGCGGCGGCTGCTGCAGCGGCGTGCGTGGCCTTAACGCGGCCGCTGCCA
CCCCCGCCGACCGCAAGACCACCTGCACCTGTCTCAAGCAGCAGGCGAGCGGCATGGGCGGCATCAAGCCCAACCTCGTC
GCCGGCATCCCCGGCAAGTGCGGCGTCAACATCCCCTACGCCATCAGCCAAGGAACCGATTGCTCCAAGTAATTACTTAC
CCAGTTGCCCTAATGCTACAGCTTTAGGACTTTTCATAGATCTATATGATTACATGCATGGACTGATGGACACATGAGTT
AACGAATTAACAAATGATTGTTTTGTTTT-AACTTTCATTTGATGTATGCAGGGTGCGTTAA------------------
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>chr4A_1_TraesCS4A01G194400
GGGCCTCTTCA---GCTTCATCAACGCTCCCC-ACTGGTAGCTCACTTGGAAATCATGGGCGCTTTTGTGGATCAAATTT
TTTGCTTGGCTCGTGCTGCAAAACCGGTGTTGGACGGCCCCTCACCTGGCTAGACACAACCTTCCTCATCACACGTCCTG
TCCAGCCTGCTCCGTGACCAGGCACCAGAATCCATGGAGCACTTGCTGGTGGGCTGCCCGTTCTCGAGACAAATCTAGCA
CGACACTTTCGCTTGGTGTCTTCACCATGCTCGGGTTCCCTCGCCACAAAATATCTTTCTGGATCGGTGGCACACTACGT
ACGATTCAGTCCTGGCAGCCTACAAGAAAGGCGTTTCCTCGCTCATTCTTCTCGTTCCCTGGTCAATTTGAAAGCATCGC
AATTCGTGCGTGTTTGATGGAGGCACTACCTCCAGCGCCTAGCTGATCCATGCTA-CCAGGAGGAGCTGT----------
--------AGGATTCGCAAGCTTTGCGTATTTGCGAAAAAA-ATAAATTTTATCAACACATATCTTACACCTGC------
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-----------------------------TCGAGAAGTCCTAATAGGTTACATTTCCAGTGAACCTTTATAATTGTTCTT
GATCTTTTTGAAACAAAAATCGGGCAAAAGCTCGTGACCTATGTGCATGGTGAAGTGCAGGCTTCGTCGCGTATGCAGAC
AGTGGAGTGCGGGCTTCCATCCTTGCCCTCCTGAACTGCAGAGATAAGTGAAGAGATACGTATGTTAGACGTCGACACGG
CTCTTCTGCCATCTGCAGGCGCCATGAATGAA--TCCATCCCTAGTAAGTGAAGAGATATGTCCCAACTACCACCAGCTA
CCTCACCGCCGTACTCCGCGTAGTAATAACTGTTTTCTTACCAGTCGACCACCCGGCCCAAAACCACTATAAAAACCCTC
CTAGCCAGTCCCCAAATCCTCACCCACTCACTCACAGTCCCTCGGCCTTCACTCACACACCAACTAAGCCCACAGAGCAA
GCACACTAGCTAG--TTTCTGCCATGGCAGCTCGCCGTGCCCACGCCGCGGCGGCCTTGGCCCTGCTGGTGGCGGCGCTC
GTGCTGTCTGCGGCACCGGCGCCGGCCGAGGGTGCGGTTGCGAACTGCGGCCAGGTGGTGAGCTACCTGGCCCCGTGCAT
CAGTTACGCCATGGGCAGGGTGAGTGTGCCTGGCGGCGGCTGCTGCAGCGGCGTGCGTGGCCTTAACGCGGCCGCTGCCA
CCCCCGCCGACCGCAAGACCACCTGCACCTGTCTCAAGCAGCAGGCGAGCGGCATGGGCGGCATCAAGCCCAACCTCGTC
GCCGGCATCCCCGGCAAGTGCGGCGTCAACATCCCCTACGCCATCAGCCAAGGAACCGATTGCTCCAAGTAATTACTTAC
CCAGTTGCCCTAATGCTACAGCTTTAGGACTTTTCATAGATCTATATGATTACATGCATGGACTGATGGACACATGAGTT
AACGAATTAACAAATGATTGTTTTGTTTT-AACTTTCATTTGATGTATGCAGGGTGCGTTAAGCGTGAGACCGGAACCAT
TTCAGATGCATGGTGAGAGCGAAATAAATCGTGGAAGCCAGCCGTCCTTGCTGCATGGCTCCACCCCGTTTGATTTACTG
CTTTACTAGTTCTACTGTTTCCCTAATAAATTAGTTTTA-------CTGCTGCTGCTTCGATCATACGTTGTGGCCGATG
TTGTTGCCACGAGAGCTGTGATCTTGTACTCCTGAGGGGACCTCGTGTCCTTTGTTGGAATTC-TGTAATGCATGCTTAC
ATCTATATATAGATGATGAACAAGCGAAATACAGGGTCCTTTAATAATGTCAGTATGTCTGAATCGCGGTTTGCACGCAG
CCAAGTTGTTCTCCTACTTCGTTCAAGAAAGGGTAACGCTTGAGACATTAACGAAATCCTTATTATATTATTTTGGTCAT
TAACATATTTTAAAAGTATTTCCGTTGAGACGATACCTTGCATACTATTAAGTTTCCAATCTAAAATCTAAATATTTAAG
ACAATTTACATTTGGAATCAATATTTAAGACAATTTACATCAAACACAAGTGCATATATAGAAAAGTTCAGACACAAGCT
CACACTAGTGCATATATAGACAAGTTTGCACAAAACTTCAATGAGAACTAGCACATGATAAGTGTAGAGAGAAGACAGGT
CCAAAAGGAACGAAAAAACCTATCAAATGCATTACAAGTGTTGACGGCAATGTGTACATCGATCAAAGACATCCGCAATG
CAAACATATTAAATGAAATTCATAATGCCGAGTAAGTTTCCAAAACGGATTAATACACAAAAATGGGCCATTTGGCTCAT
GTCACAGAAATGAACCATTGGGCTCATAAATGCAGCCATGGAATCAAAAAAATGAGTCATGTGGCTCATAAATGCCGCCA
TGGCAGTGAAAATGAGCACTTTGGCTCTAAGAGCATGATTAGTACTAAAATAAGTCCCTTAAATTCAAGCACCCTCTTAG
TAGTGTTGTTACATGTAGTTGTCACGTCAC
>chr4D_1
GGCCCTCTTCAACGGCTTCATCGGCGCTCCCC-ACTGGTAGCTCACCTGGAAATCATGGACACCTTTGCTGATCAAATTC
TTTACCTGGCTCGCGCTGCAAGACTGGTGTTGGACGGCCGCTCGCCTGGCTAGACACGACCTTCCTCATCACACGTCCTG
CCTGCT---CTCTGTGACCAGGCTTCAGAATCCATGGAGCACTTGCTGGTGGGCTGTCCGTTCTCGAGACAAATCTAGCA
CGACATTATCGCTTGGTGTCGTCACCATGCTCAGGTTCCCTCGCCACACGATTCCTTTCTGGATTGGTGGCACGCTACGT
ATGATTCAGCCCCGGCAGCCTACAGGAAAGGCATTTCCTTGCTCATTCCTCTCGTTGCCTGATTAACTTGGAAGCATCGC
AATTCGTGCGTGTTTGAGGGAGGCACTCCATCCAGCGCCCAGCTGATCGATGCTATCCAGGAGGAGCTGCACTCCAGGAC
CAAGGCAA------------------------------------------------------------------------
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-------------------------------GAGAAGTCCTAATAGATCACATTTCCAGTGAACCTTTATAATTGTTCTT
GATCTTTTTGAAACAAAAACCGGGCAAAAGCTCGCGACCTGTGTGCACGGTGGAGTGCAGGCTTCGTCGCGTATGCGGAC
AGTGGAGTGCGGGCTTCCATCCTTGCCCTCCTGAACTGCAGAGATAAGTGAAGAGATA----TGTTCGACGTCGACACGG
CTCTTCTGCCATCTGCAGGCGCCATGAATGAATTTCCATCCCTAGTAAGTGAAGAGATATC-CCCAACTACTACCAGCTA
CCTCACCGCCGTACTCCGCGTAGTAATAACTGTTTTCTTAG-AGTCGACCACCGGGCCCAAAACCACTATAAAA-CCCTC
CTAGCCACTCCCCAAAATCTCACCCACTCACTCACACTCCCTCGGCCTTCACTCACACACCAACTAAGCCCACGGAGCAA
GCACACTAGCTAG--TTTCTGCCATGGCAGCTCGCCGTGCCCACGCCGCCGCGACCTTGGCCCTGCTGGTGGCGGCGCTT
GTGCTGTCTGCGGCACCGGCGCCGGCGGAGGGTGCGGTTGCGAACTGCGGCCAGGTGGTGAGCTACCTGGCCCCGTGCAT
CAGTTACGCCATGGGCAGGGTGAGTGCGCCTGGCGGTGGCTGCTGCAGCGGCGTGCGTGGCCTTAACGCGGCGGCTGCCA
CCCCCGCCGACCGCAAGACCACCTGCACCTGCCTCAAGCAGCAGGCGAGCGGCATAGGCGGCATCAAGCCCAACCTCGTC
GCTGGCATCCCCGGCAAGTGCGGCGTCAACATCCCCTACGCCATCAGCCAAGGAACCGATTGCTCCAAGTAATTACTTAC
CCAGTTGCCCTAACGCTACAACTCTACGACTTTTGATAGATCTATATGATTACATGCAA--------GGACACATGAGTT
AATGAATTAACAAATGATTATGTTGTCTTTAACCTCCTTTTGATGTATGCAGGGTGCGTTAAGCGTGAGATCAGAACCAT
TTCAGATGCATGGTGAGAGCGAAATAAATCGTGGAAGCCGGCCGTCCTTGCTGCATGGCTCCACCGCGTTTAATTTACTG
CTTTACTAGTTCTACTGTTTCCCTAATAAATAAATTAGTTTTACTGCTGCTGCTGCTTCGATCGTACGTTGTGGC-GCAG
TTGTTGCCACGAGAGCTGTGATCTTGTACTCCTGAGGGGACCTCGTGTACTTTGTCGGAACTATTGTAATGCATGCTTAC
ATCTATATATAGATGATGAACAAGCGAAATACATGGTCCTTTAATAATGTCA----------------------------
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>chr4B_1
GGCCCTCTTCAACGGCTTCATCGGCGCTCCCCCACTAGTAGCTCACCTGGAAATCATGGACACCCTTGCTGATCAAATTC
TTTACCTGGCTCGCGCTGCAAGACCGGTGTTGGACGGCCGCTCGCCTGGCTAGACACGACCTTCCTCATCACACGGCCTG
CCTGCT---CTCTGTGACCAGGCTCTAGAATCCATGGAGCACTTGCTGGTGGGCTGCCCGTTCTCGAGACAAATCTAGCA
CGACATTTTCGCTTGGTGTCCTCACCATGCTCAGGTTCCCTCGCCACACGATTCCTTTCTGGATTGGTGGCACGCCACGT
ACGATTCAGCCCCGGCAGCCTACAGGAAAGGCATTTCCTTGCT------------------ATCAATTTGGAAGCATCGC
AATTCGTGCGTGTTTGAGGGAGGCACTCCATCCAGCGCCCAGCTGATCCATGCTATCCAGGAGGAGCTGCACTCCTGGAC
CAAGGCTGAGGAATGATAAGCCTTGCATACTTGTGAAAAAAGATAAATTTTATCAACACGTACTCCAGTGAACCGAGAAG
TCCTAATAGATCACATTTCCAGTGAACCTTTATAATTGTTCTTGATCTTTTTGAAACAAAAACCGGGCAAAAGCTCGTGA
CCTATGTGCACGGTGGAGTGCAGGCTTCGTCGCGTATGCGGGCAGTGGAGTGCGGGCTTCCATCCTTGCCCTCCTGAATT
GCAGAGATAAGTGAAGAGACTAGTGGTTGTGGCGTCACCCTGTGGCGTCGCTTGAGAGGAAGTTGTGTACACGTTTTCAT
TTAAAAAAAATACATAGAGTCCTCGTCTTCGTCTAAAAAACATCTCAGAAAAAAAAATCCTCACATTCATCTAAAAAAAA
AGAAAAAAAATCACCACCACAACCTACGTGCGAGTGCCACTTTGCATAAGCCTCCACTTAAAAAATAACAGAGGTCCACA
CCTCCATCTAAAAAGAAAAAGAATACATTTAAAAAATAATCCACACCTTCATCTAAAAAGAATTTCAGGCACAATCACAA
TGACATACTTACAGTGGAGGCACAACTTGTAGCGAAAATAATGCCATCTTTCAGAATGGCCCGTGTAAAAATAGAAGCTA
ACCTCAGCGTACTTCTTGAGAAGGCGAAGCCAGTCAGTTATGTTAGCTCATCGGCAAACCCAGAGCAGATTGCTTTACAT
ACAGAAGTTCCAAGCGAGATCAAAAGTGTGAAATTCAGTGCTTACCATTTCACAGAACAGGAAATTTCTATCTTTACAAA
TTACATCGCCCCGTTCCTCATGTTAGCATCATGTAGGGATTATCAGTTTATAATTGTTCTGTGCTGCACAATCTCCAAAT
TCAGAAAGGGAAATATAGCATATACGCATTCGAGAAGTCCTAATAGATCACATTTCCAGTGAACCTTTATAATTGTTCTT
GATCTTTTTGAAACAAAAACCGGGCAAAAGCTCGTGACCTATGTGCACGGTGGAGTGCAGGCTTCGTCGCGTATGCGGAC
AGTGGAGTGCGGGCTTCCATCCTTGCCCTCCTGAATTGCAGAGATAAGTGAAGAGATA----TGTTAGACGTCGACACGG
CTCTTCTGCCATCTGCAGGCGCCATGAATGAATTTCCATCCCTAGTAAGTGAAGAGATATGTCCCAACTACCACCAGCTA
CCTCACCACAGTACTCGGCGTAGTAATAACTGTTTACTTAGCAGTCGACCACCGGGCCCAAAACCACTATAAAAGCCCTC
CTAGCCACACCCGAAATTCTCACCCACTCACTCACACTCCATCGGCCTTCACTCACACACCAACTAAGCCCACAGAGCAA
GCACACTACTAGCTATTTCTGCCATGGCAGCTCGCCGTGCCCACGCCGCCGCGACCTTGGCCCTGCTGGTGGCGGCGCTT
GTGCTGTCTGCGGCACCGGCGCCGGCGGAGGGTGCGGTTGCGAACTGCGGGCAGGTGGTGAGCTACCTGGCCCCGTGCAT
CAGTTATGCCATGGGCAGGGTGAGTGTGCCTGGCGGTGGCTGCTGCAGCGGCGTGCGTGGCCTTAACGCGGCGGCTGCCA
CCCCCGCCGACCGCAAAGCCACCTGCACCTGCCTCAAGCAGCAGGCGAGCGGCATGGGCGGCATCAAGCCCGACCTCGTC
GCCGGCATCCCCAGCAAGTGTGGCGTCAACATCCCCTACGCCATCAGCCCTAGAACCGATTGCTCCAAGTAATTACTTAC
CCAGTTGCCCTAATGATAAAACTCTAGGACTTTTGAT----------------------------------ACATGAGTT
AATGAATTAACAAATGATTATTTTGTCTTTAACTTTCTTTTGATGTATGCAGGGTGCGTTAAGCGTGAGATCAGAACCAT
TTCAGATGCATGGTGAGAGCGAAATAAATCGTGGAAGCCGGTCGTCCTTGCTGCATGGCTCCACCGCGTTTAATTTACTG
CTTTACTAGTTCTACTGTTTCCTTAATAAATTAG-TTTA-------CTGCTGCTGCTTCGATCGTACGTTGTGGCCGCCG
TTGTTGCCACGAGAGCTGTGATCTTGTACTCCTGAGGGGACCTCGTGTACTTTGTCGGAACTATTGTAATGCATGCTTAC
ATCTATATATATATGATGAACAAGCGAAATACAGGGTCCTTTAATAATGTCAGCATGA-TGAATCGCGGTTTGCACGCAC
CCAAATTCTTCTCCTACTTCGTTCAAGAAAGAGTAACGTTTGAGACATTAACGAGATCCTTATAATATTATTTTGGTCAC
TAAAATATTTGAAAAGTATTTACGTTGGACAATAACTTGTA----TATTAAGCTTCCAATCTAAATATCTAAA-------
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>SNPs
--S-------------------SS----------------------S------------S-S-S----SS---------S
---S-S-------S-------S-----------------S---S-------------S----------------------
S-SSSSSSS---S----------S--------------------------------------------------------
-----S--------------S-----------S---------------SS--SS----------S--------S------
---------S--S-----------S-------S------S--------S-------S----S--------S---------
-----------------S---------S-S---------S-----------------------------S----------
------------S-SSS----S----S--S---S-------------------------S--SSSS-SSSSSS-------
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----------------------------------------------S-S-------------------------------
-------------------S---------------------------S----S-----------------------S---
----------------------------------------------------------SSSS------------------
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----------------------------------------S------------S--------------------S-----
-------S---------S------------------S-------------------------------------------
-------------------------------------------------S---S-------------------------S
--------------------------S-----------------------------------------------------
------------------------------------S-----------------------------------S-------
-------------------------------S------------------------------------------------
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--------------------S--S----------S-----------------------SSSSSSSSS-------------
--S----------------S------S----------S--------------------------------S-S-------
---------------------------------------S-------------------------S-----S--------
---------------------------------------------------------------S-------------SS-
------------------------------------------------S------S----S-S-----------------
-----------------------------------------------------S---SS--------------------S
----S--S-----------------------S------S---------------S--------S---------------S
---S------S----------S-----SSSSSSS--S-SSSSSSS-------S------------SSSSS--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_497
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-----------------------------------------------------------------------------GGA
GGAGCTGTAGGATTCGC---------------------------------------------------------------
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>reverse_3219
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------------------TGGGCTCATAAATGCAGCCA------------------------------------------
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