>input_sequence_77658
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------ATGGCATCCTCCCTCAGGGCATTGCTTGTTGAGGATACGGCAGTTCAA
CGCATGGTTGTCTCCGCCATGCTGCGCAATCAGTTTCACTGCGAGACCACTCTGGCGAAGAATGGGAAAGAAGCTGTTGA
CATGTTCCTCGAGGGCAACACGTTCGATATAGTCTTTTGTGATAGGGACATGCCCATAATGACCGGTCCGGAGGTACTT-
---ACTTTAGCTAA------TTTTTTCCATTTCTTTCTCTTCCTTTTTT-GCTTGAACATAACACATAC----TGCATGA
TCACCTCATCAACACAATATTCCGTGTACATGTTAATTACTTGACAGGCAGTTGTGAAGATCCGTGCTATGGGAGCCACT
GATGTGAAGATCGTCGGGTTGTCGGATGACGATAACGCCATGGAGGCGTTCATCAGCGCCGGCGCCGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAGACTGTCGGGCCTATGATTCAGGAGGTCATCAATAAGAAGCTAGAACAGTTAGCGGC-----
-------GCTTGCTTGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr1D_1_TraesCS1D01G452100
CTCTCCTCCCTCTGTTTTTCATC-------TTTTTTTCTCTCGCCATGCATCTTCTACTAGTTTTCTCTCCATTCATGGA
GACATGATTGATGGAGATTAATTTGCTAGAGGCAGGCGATATGTACATGTGAAACAAGCTAGTGCATCCTGATTGGTTTT
GATCTATGCAGCACGATTTTTGGTTGCTGTTGCAGCCATGTATATGCATCTATTTTTTGCAATTTCTTTTGTTGCGTTCT
TT-GCCTTTTTGTGCTTATCCTCATGTGTTTTCGGTGCTACATGTCGCAAAAATAAGCATAGGAAAGAGTTAACTTTCTT
ATTTC-CTTGATCTTATCTTTTGCCCTTGCATACAA---ATTTCTTTTCTCTGATCTTTCCATGACCGA----TCAAGGA
AGTGGCAGACACCAACTAAGAAGGCGGTACGTGCGTACCTCTTGCAACAGCAGTTACATACTCTCATGATTGTATCTGTT
CCTTTCTTAATTTGTTTCTTCTGCCTCTCTTTCTCTCTTTACTTTTTTTTGCATCAACAATGTTGCACTATTTTTAATT-
---TGGCTCCCTGGTTACAAGATCGAGATTTTTTAGATGCGCTGCCTAAACACACAAATAATATATTGCTGATT-TATAA
TTTGGATCTGCATGCATATTGTTGCACTGGTTGTTGTTGGCATGAAGCTATGCATATGGATCTATGTAGATACC--ATGC
ATGTTGCAGATTCTTT----------------------------------------------------------------
-----------------------------------------------TTGTCCTCATCTATGCAATCTAGGGGGG-AAAA
ATCTCCATCTCTTCC-CCTGATAAAGCATTCAATAATCTACT--------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGTAGAGAATAATTAATAAAGTGTGCAT
ACCTCTGATCTCAGCTTATTCTGCATGCATGCTTGATTTTGCAGAA-CAGTTCTGTTACTGTATAT----CAGCAGCTGA
GATCTACGAAACGTGTGCTTATCTTCCTATTAGACAGTAGATGTGGATCAGAAATAACTAATCTCTTCATAAATTCTGTT
TGTTT-TTTGCAGTTGTTTTCGCTAGCTGATCATGGCATCCTCCCTCAGGGCATTGCTTGTTGAGGATACGGCAGTTCAA
CGCATGGTTGTCTCCGCCATGCTGCGCAATCAGTTTCACTGCGAGACCACTCTGGCGAAGAATGGGAAAGAAGCTGTTGA
CATGTTCCTCGAGGGCAACACGTTCGATATAGTCTTTTGTGATAGGGACATGCCCATAATGACCGGTCCGGAGGTACTT-
---ACTTTAGCTAA------TTTTTTCCATTTCTTTCTCTTCCTTTTTT-GCTTGAACATAACACATAC----TGCATGA
TCACCTCATCAACACAATATTCCGTGTACATGTTAATTACTTGACAGGCAGTTGTGAAGATCCGTGCTATGGGAGCCACT
GATGTGAAGATCGTCGGGTTGTCGGATGACGATAACGCCATGGAGGCGTTCATCAGCGCCGGCGCCGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAGACTGTCGGGCCTATGATTCAGGAGGTCATCAATAAGAAGCTAGAACAGTTAGCGGC-----
-------GCTTGCTTGATCCAGCCATGGAGGAATACATGCATAAA--GCTAGCTCATATGCATCATAGCT----TTTGGC
ATGCACTATATT---------ACTGTCGTGTTGTCATTTTACTTTC-AAGGTCATGTTAAAGGTCGGGCGTGATTAGCAA
GAAGAAGAAGAAAAAGCAGCAGCAGCAGCAGCAGAGAGGCTACCGACATAATTAGACCATTTGGATGATAATACTATCGA
AATTGTCATTTGGATCGGATGATACTAATTGACACCGTGCCAATGGTTGTATTATTACATGCATGTGGAATGTGGCCACG
TGGTGCACA-----GTACGTACGTACGTACGTACGTACGTACCTACCTACCTGCTGAATTGGCTCGATGCATAATTATAT
ATCTTT-GTCGATCTACAAAGTTTCGGATCCAGCGAGTACAGTACGTAGTAGCTACGATCGACTTGATATCGCTAGCTCG
CAACTTTACGT----AAGACACGCCAGCGATCGATC--------------GATATCGTTTGTTTCTATTCTCTATATCAC
GTACACACGCTGCACAATGCCAGCCACGTACCCCCGTCCTATATACGCACCGCTACGTACTAGTACTACTGTCCTATACG
TATATATGAGTACACACACAAGCCAACTAGCTAGCCAAGTCTACT-----------------------------------
-------------CCATGAGACATGCCACATGCA---TATGTCTATTTGAATCCGCCAAAGCCAAAACGGACGATCCATC
TTGTCACTTC-AAGTGGTACGTACCGAGAAAAACGCCATTGCTTCTTATCCT-------TCAAACCTCCTGTTCCTGTGA
ACTTCTCGAGATGAATCCTAGCAATCGTCTTCCTTGTAAGCCACGGCTTGGTTCCTATAAA-----TAAACTCACGCAGC
CCTACGGGGTTGTATGCTTCCTCGAAAACTTACATAATCATCACCCCTATTAGGTTGATCGATGGAAGCGTTCCTACTCT
TCAGGGGGAGAGCCGCGTTGCTATATATTGATGCGGACAGAAGACCTGTCGTAGATTACAAGACAGGACGATCGCTAGGA
T
>chr1B_1
CTCTCCTCCCTCTGTGTCTGCCTTCTTCATTTCTTCTCTCTCGCCATGCATCTGCCACTAGTTCTCTCCG--TTCATGCA
GACATGATTGATAGAGATTAATTTGCTAGAGGA----GATATATACATGTGAAACAAGCTAGTGCATCCTGATCTGTTCT
GATCTATGC------------------------AGCCATGTATATGCATCTATG-TTTGCAATTTCTTTTGTTGCGTTCT
TTTGCCTTTTTGAGCTTATCCTCGGGGTGTTTCGGTGCTACATGTCGCAAAAATAAGCATAAGAAAGAGTTAACTTTCTT
ATTTTTCTTGATCTTATTTTTTGTCCTCGCATACAAATTATTTCTTTTCTCTGATCTTTCCATGACCGACCGGTGAAGGA
AGTGGTAGACACCAATTAAGAAGGTGGTACGTGCGTACCTCTTGCAACAGCAGCTACGTACTCTGATGATTGTATCTGTT
CCTTTCTTAATTTGTTTCTTCTGCCTCTCTCTCTTTACCTTTTTTTTTTTGCATCAACGATGTTACACTATTTTTAATTA
ATTTGGCTCCCTGGTTAAAAGATCAAGATTG-TTAGATGCGCTGCCTAAACACACAAATAATATAATCATCAGAGTATAA
TTTGGATCTGTATGTATATTGTTGCACTGGTTGTTGTCGGCATGAAGCTATGCATATGGATCTATGTAGAGACCGTATGC
ATGTTGTAAATTCTTTCTGTGTGTGGAGAAATTATCCATCCAAGTAT-----GGCACAGTCTCTGCCATTGTTGCTATCG
ATCCAAATTAAG-------TTTCTTTTTGGGGTTTTTCCTGTTCTTTTTGTCCTAATCTATGTAGGGGG--------AAA
ATCTCCATCTCTTCC-CCTGATAAAGCATTTAATAATCTACTAAGT---AGTACTCCCTCCGTTTCAAAATATTTGTCTT
TCTAGGCATTTCAAATAGACACAACATACGGATATATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTTCGTA
CGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTCGGAACGCGACGAAGTAGAGACTAACTAATAAAGTGTGCGT
ACCTCTGATCTCAGCTTATTCTGCATGCATGCTTGATTTTGCAGAA-GAGCTCTGTTACTGTATAT----CAGCAGCTGA
GATCTATGAAACGTGTGCTTATCTTCCTATTAGC---TAGGTGTGGATCAGAAATAACTAATCTCTT-------------
--TTT-CTTGCAGTTGTTTTAGCAAGCTGATAATGGCATCCTCCCTGAGGGCATTGCTTGTTGAGGACACGGCAGTTCAA
CGCATGGTTGTCTCCGCGATGCTGTGCAATCAGTTTCACTGCGAGATGACTCTGGCGAAGAACGGGAAAGAAGCTGTTGA
CATGTTCCTCGAGGGCAACACGTTCGACATAGTTTTTTGTGATAGGGACATGCCCATAATGACCGGCCCGGAGGTACAT-
---ACTTACTTTAGCTAATTTTTC--CCATTTCTTTCTCTTCCTTTTGT-GCTTGAACATAACATAT------TGGGTGG
TCACCTCATCGACACAATGTTTCTTGTACATG----TTACTTGACAGGCAGTTGTGAAGATCCGTGCTATGGGAGCCACT
GATGTGAAGATCGTCGGGCTGTCTGATGATGATAACGCCATGGAGGCGTTCATGAGTGCCGGTGCCGATGATTTTGTGCC
CAAACCAGTGAGGCCTGAGACTGTCGGGCCTATGATTCAGGAGGTCATCAATAAGAAGCTAGAACAGTTAGCGAC-----
-------GCTTGCTTGATCCAGCCATGGAGGAATACAAAC----A--GCTAGCTCATATG---CATAGCTAGCTTTTGGC
ATGCATTATATTTTTTTTATTACCGTTATGAGGTCATTTTAGTCCT-GAGGTCATGTTAAAGGCTGGCGGTGATTAGCAA
GAAGAAGAAGAAGA---------------AGCAGAGAGGCTACCGACATAGTTGGGTCACTTGGATG---ATACTATCGA
AATTGTAATTTGGATGATACT---GTACTAGACACCGTGCCAATGGTTGTATTC--ACATGCATGTGGAATGTGGCCACG
TGGTTCACA-----GTACGTA----------------------------CCTGCTGAACTGGCTCGATGCATATAAGTAT
ATCTTT-GGCGATCTACAAAGTTTTGGATCGAGCAAGTAGAGTAC---GTAGCTACGATCGACTTGATATCGCTAGGTCG
CAACTTTACGT----AAGACACGCCAGCGATCGATC--------------G----------TTTCTATTCTCTCTATCAC
GTACACACACCGCTA--------------------------------------TACGTACTAGTACTCCTGTCCTATACG
TATATATGAGTACACACACAAGCCAACTGGCTAGCCAAGTCTTTCCTTATTTCGTCTTCGCATATATCCATCTACTCCAT
GGGTGAGTCATGGCCATGAGACATGTCACATCGCATGTATGTCTATTTGAATCCGCCAAAACCAAAACGGACGATCCATC
TTGTCACTTC-AAG--GTACGTACTGAAAAAAACGTCATTGCTTCTTATCCTTCAAAGTTCAAACCTCCTGTTCCTGTAA
ACTTGTCGAGATGAATCCTAGCAATCGTCTTCCTTGTAAGCCACGGCTTGGTTCCTATA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr1A_18
TTCTTCTTCTTC-----------------------TTCTCTCGCCATGCATCTTCTACTAGTTTTCTCTCCATTCACGCA
GACAAGGTTGATAGAGATTAATTTGCTAGAGGCGATATACATT------TGAAACAAGCTAGTGCATCCTGATTGGTTTT
GATCTATGCCGCAGGATTTTTGGTTGCTGTTGCAGCCATGTATATGCATCTGTG-TTTGCCATTTCTTTTGTTGCCTTCT
TT-GCCTTTTTGTGCTCATCCTCATGAGGAC------------------AAAATAAGCATGGGAAAGAGTTAACTTTCTT
A-TTTTCTTGATCTTATTTTTTGTCCTCGCATACAAATT---TCTTTTCTCTGATCTTTCCATGACCGG----TGAAGGA
AGTGGT--ACACCAATTAAGAAGGTGGTACGTGCGTACCTCTTGCAACAGCAGTTACGTACTCTGATGATTGTATCTGTT
CCTTTCTTAATTGGTTTCTTCTGCCTCTCTCTCTTTACCTTTTTTTT---GCATCGACGATGTTGCACTATTTTTAATT-
---TGGCTCCCTTGTCACAAGATCGAGATTG-TTAGATGCGCTGCCTAAACACACAAATAATATATTTCTGATT-CATAA
TTTGGATCTGTATGTATATTGTTGCACTGGTTGTTGTTGGCATGAAGCTATGCATATGGATCTATGTAGATACC--ATGC
ATGTTGCAGATTCCTTTTGTGTGTGGAGAAATTATCCATCCAAGTATGGGGTGGCACAGTCTCTGCCATTGTTGCTATCG
ATCCAAATTAAGCACAACATTTCTTTCTGGGTTTTTTCGTGTTCTTTTTGTCCTCATCTATGTAATCTAGGGGAAAAAAA
ATCTCCATCTCTTCG-CCTGATAAAGCATATAATAATCTACTAGTAGAGA------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTAATTAAAAAAGTGTGCAT
ACCTCTGATCTCAGCTTATTCTGCATGCATGCTTGATTTTGCAGAA-CAGTTCTGTTACTGTATATATATCAGCAGCTGA
GATCTACGAAACGTGTGCTTATCTTCCTATTAGCTAGTAGATGTGGATCAGAAATAACTAATCTCTTCATAAATTCTGTT
TGTTT-TTTGCAGTTGTTTTAGCTAGCTGATCATGGCGTCCTCCCTCAGGGCATTGCTTGTTGAGGATACGGCAGTTCAA
CGCATGGTTGTCTCCGCCATGCTGCGCAATCAGTTTCACTGCGAGATGACTCTGGCGAAGAATGGGAAAGAAGCTGTTGA
CATGTTCCTCGAGGGCAACACGTTTGATATAGTTTTTTGTGATAGGGACATGCCCATAATGACCGGCCCGGAGGTACATA
CGCACTTTAGCTAA------TTTC--CCATTTCTTTCTCTTCCTTTTTTTGCTTGAACATAGCACATATATATTGCATGG
TCACCTCATCGACTCAATATTTCTTGTACATGTTAATTACTTGACAGGCAGTTGTGAAGATCCGTGCTATGGGAGCCACT
GATGTGAAGATCGTGGGGCTGTCTGATGATGATAATGCCATGGAGGCGTTCATCAGCGCCGGCGCCGATGATTTCGTGCC
CAAACCAGTGAGGCCTGAGACTCTGGGGCCTATGATTCAGGAGGTCATCAATAAGAAGCTAGAACAGTTAGCGAC-----
-------GCTTGCTTGAACCAGCCATGGAGGAATACATGCATAAA--GCTAGCTCATATG---CATAGCT----TTTGGC
ATGCACTATATT---------ACTGTCGTGTTGTCATTTTACTTTC-AAGATCATGTTAAAGGTCGGGCGTGATTAGCAA
GAAGAAGAAGAAGA---------------AG---------TACCGACATAATTAGACCATTTGGATGAT-ATACTATCGA
AATTGTCATTTGGATCGGATGATAGTAATTGACACCGTGCCAATGGTTGTATTATTACATACATGCATACATTTGGTGCA
CAGTACGTACGTACGTACGTA----------------------------CCTGCTGGATTGGCTCGATGCGTAATTATAT
ATCTTTTGTCGATCAACAAAGTTTCGGATCGAGCGAGTACAGTAC---GTAGCTACGATCGACTTGATATCGCTAGCTCG
CAACTTTACGTAAGAAAGACACGCCAGCGATGGATCAACCGATATCGTTTG----------TTTCTATTCTCTCTATCAC
GTACACACAATGCACAAGGCCAGCCACCTACTCCCGTCCTATATACGCACCGCTACGTACTAGTACTACTGTCCTATACG
TATATATGAGTACACACACAAGCCAACTAGCTAGCCAAGTCTTTCCTTATTTCCTCTTCGCATATAGGA-----------
-------------------------------GCA---TATTTCTATTTGAATCCGCCAAAGCCAAACT-GACGATCCATC
TTGTCACTTCCAAG--GTACGTACTGAGAAAAACGCCATTGCTTCTTATCCTT-------CAAACCTCCTGTTCCTGTGA
ACTTGTAGAGATGAATCCTAGCAATCGTCTTCCTTGTAAGCCACGGCTTGGTTCCTATAAATTAAATAAACTCACGCAGC
CCTACGGGGTTGTATGCTTCCTCGAAAACTTACATGATCATCA-------------------------------------
--------------------------------------------------------------------------------
-
>chrUn_708
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTTTATCCTCATATATGTAATCTAGGTAAAAAAAT
CAT--CATATCTTCCTCCTCATAAAGGATTCAATAAACTAGTAAAT---AGA----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AATAATTTAAAAAGTGTGCAT
ACCTCTGATCTCAGCTTAATCTGCATGCATGTATGATTTTACAAAAACAAATATTTTACTATATAT-------CAGCTGA
GATAAATGAAACG----------------------------TGTGGATCAGAAACAACTAAACTCTTTATAAATTATGT-
--TTT-TTTGCAGTTCTTTTAGCTAGCTGATCATGGCAGCCTCCCTCAAGGCATTGCTTGTTGATGATATGGCAGTTGAA
CGCATGGTTGTCTCCTCCATGCTGCGCAA---GTTCCATTGTGAGATCACCCTGGCGAAGAATGGGAAAGAAGCTATTGA
TATGTTTCTTGAGGGCAATGAGTTTGATATTGTTGTGTGTGATAAGGACATGCCCATAATGACCGGTCCTGAGGTACAT-
---ACTTTAGCTAA------TTTC--CCTTTTCTTTATCTTCCTTTTTT-GCTTTGACATAACACATAT----TGGATGG
TCACCTCATCGACAAAATATTTCTTGTACATG----TTACTTGACAGGCTGTTGTGAAGATCTGTGCTATGGGAGCCACA
GATGTGAAGATCGGCGGGGTGTCTGCTGATGATAACGCCATGGAGGCGTTCATGTGTGCCGGTGCTGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAGATTCTGCAGCCTATGGTTCAGGAGGTCATCAACAAGAAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chrUn_708
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTTTATCCTCATATATGTAATCTAGGTAAAAAAAT
CAT--CATATCTTCCTCCTCATAAAGGATTCAATAAACTAGTAAAT---AGA----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AATAATTTAAAAAGTGTGCAT
ACCTCTGATCTCAGCTTAATCTGCATGCATGTATGATTTTACAAAAACAAATATTTTACTATATAT-------CAGCTGA
GATAAATGAAACG----------------------------TGTGGATCAGAAACAACTAAACTCTTTATAAATTATGT-
--TTT-TTTGCAGTTCTTTTAGCTAGCTGATCATGGCAGCCTCCCTCAAGGCATTGCTTGTTGATGATATGGCAGTTGAA
CGCATGGTTGTCTCCTCCATGCTGCGCAA---GTTCCATTGTGAGATCACCCTGGCGAAGAATGGGAAAGAAGCTATTGA
TATGTTTCTTGAGGGCAATGAGTTTGATATTGTTGTGTGTGATAAGGACATGCCCATAATGACCGGTCCTGAGGTACAT-
---ACTTTAGCTAA------TTTC--CCTTTTCTTTATCTTCCTTTTTT-GCTTTGACATAACACATAT----TGGATGG
TCACCTCATCGACAAAATATTTCTTGTACATG----TTACTTGACAGGCTGTTGTGAAGATCTGTGCTATGGGAGCCACA
GATGTGAAGATCGGCGGGGTGTCTGCTGATGATAACGCCATGGAGGCGTTCATGTGTGCCGGTGCTGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAGATTCTGCAGCCTATGGTTCAGGAGGTCATCAACAAGAAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chrUn_708
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTTTATCCTCATATATGTAATCTAGGTAAAAAAAT
CAT--CATATCTTCCTCCTCATAAAGGATTCAATAAACTAGTAAAT---AGA----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AATAATTTAAAAAGTGTGCAT
ACCTCTGATCTCAGCTTAATCTGCATGCATGTATGATTTTACAAAAACAAATATTTTACTATATAT-------CAGCTGA
GATAAATGAAACG----------------------------TGTGGATCAGAAACAACTAAACTCTTTATAAATTATGT-
--TTT-TTTGCAGTTCTTTTAGCTAGCTGATCATGGCAGCCTCCCTCAAGGCATTGCTTGTTGATGATATGGCAGTTGAA
CGCATGGTTGTCTCCTCCATGCTGCGCAA---GTTCCATTGTGAGATCACCCTGGCGAAGAATGGGAAAGAAGCTATTGA
TATGTTTCTTGAGGGCAATGAGTTTGATATTGTTGTGTGTGATAAGGACATGCCCATAATGACCGGTCCTGAGGTACAT-
---ACTTTAGCTAA------TTTC--CCTTTTCTTTATCTTCCTTTTTT-GCTTTGACATAACACATAT----TGGATGG
TCACCTCATCGACAAAATATTTCTTGTACATG----TTACTTGACAGGCTGTTGTGAAGATCTGTGCTATGGGAGCCACA
GATGTGAAGATCGGCGGGGTGTCTGCTGATGATAACGCCATGGAGGCGTTCATGTGTGCCGGTGCTGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAGATTCTGCAGCCTATGGTTCAGGAGGTCATCAACAAGAAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr1A_753
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TCTCTTCC-CCTGATAAAGGATTCAATAAACTAGTAAAT---A------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTAATTAAGAAAGTGTGCAT
ACCTCTGATCTCAGCTTATTCTGCATGCATGCATGATTCTGCAA-AACAAATCTTTTACTATATAT-------CAGCCAA
GATCAATGAAAC----------------------------ATGTGGATCAGAAATAACTAATCTCTTTATAAATTATGTA
---TT-TTTGCAGTTCTTGTAGCTAGCTGACCATGGCATCGTCCCTCAAGGCATTGCTTGTTGATGATATGGCAGTTGAA
CGCATGGTTGCCTCCGCCATGCTGCGGAA---GTTTCATTGCGAGATCACCATGGCGAAGAATGGGAAAGAAGCTGTTGA
TATGTTCCTTGAGGGCAACGAGTTTGATATTGTTGTATGTGATAAGGACATGCCCATAATGACCGGCCCTGAGGTATATG
C-----TTAGCTAA------TTTC--CCATTTCTTTCTCTTCCTTTTTC-GCTTGAACATAACACATAT----TGGATGA
TCACCTCATTGACACAATATTTCTTGTACATG----TTACTTGACAGGCAGTTGAGAAGATCCGTGCTATGGGAGCCATC
GATGTGAAGATCGTCGGGGTGTCCGCTGATGATAACGCCATGGAGGCGTTCATGAGTGCCGGCGCTGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAGATTCTTGAACCTATGATTCAGGAGGTCATCAATAAGAAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr1D_930
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGTGGATCA-AAACAACTAATCTCTTTATAAATTAT-TA
---TT-TTTGCAGTTCTTGTAGCTAGTTGATCATGGCATCGTCCCTCAAGGCATTGCTTGTTGATGATATGGCAGTTGAA
CGCTTGGTTGCCTCCGCCATGCTGCGGAA---GTTTCATTGTGAGATCACCATGGCGAAGAATGGGAAAGAAGCTGTTGA
TATGTTCCTTGAGGGCAACGAGTTTGATATTGTTGTATGTGATAAGGACATGCCCATAATGACCGGTCCTGAGGTATATG
C-----TTAGTTAA------TTTC--CCATTTCTTTCTCTTCCTTTTTT-GCTTGAACATAACACATAT----TTGATG-
TCACCTCATTCACCCAATATTTCTTGTACATG----TTACTTGACAGGCAGTTGAGAAGATCCGTGCTATGGGAGCCACC
GATGTGAAGATCGTCGGGGTGTCCGCTGATGATAACGCCATGGAGGCGTTCATGAGTGCCGGCGCTGATGACTTTGTGCC
CAAACCAGTGAGGCCTGAAATTCTCGAACCTATGATTCAGGAGGTCATCAATAAAAAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr1B_930
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGTGGATGAGAAATAACTAATATCTTTATAAATTATGT-
---TT-TTTCCAGTTCTTGTAGCTAGCTGATCATGGCATCGTCCCTCAAGGCATTGCTTGTTGATGACATGGCAGTTGAA
CGCATGGTTGCCTCCGCCAAGCTGCGGAA---GTTTCATTGCGAGATCACCATGGCGAAGAATGGGAAAGAAGCTGTTGA
TATGTTCCTTGAGGGCAATGAGTTTGATATTGTTGTATGCGATAAGGACATGCCCATAATGACCGGTCCTGAGGTATGTG
C-----TTAGCTAA------TTTA--CCATTTCTTTCTCTTCCTTTTTT-GCTTGAACATAACACATAT----TGGATGG
TCACCTCATTGACATAATATTTCTTGTACATG----TTACTTGACAGGCAGTTGAGAAGATCCGTGCTATGGGAGCCACC
GATGTGAAGATCGTCGGGGTGTCTGCTGATGATAACGCCATGGAGGCGTTCATGAGTGCCGGCGCTGATGACTTTGTGCC
TAAACCAGTGAGGCCTGAGATTCTCGAGCCTATGATTCAGGAGGTCATCAACAAGAAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>chr1D_931
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TGTGGATCAGAAACAACTAATCTCTTTATAAATTATGT-
---TTTTTTGCAGTTCTTTTAGCTAGCTGATCATGACATCCTCCCTCAAGGCATTGCTTGTTGATGATATGGCAGTTGAA
CGCATGGTTGTCTCCTCCATGCTGCGCAA---CTTCCACTGCGAGATCACCCTGGCGAAGAATGGGAAAGAAGCTGTTGA
TATGTTTCTTGAGGGCAACGAGTTTGATATTGTTGTGTGTGATAAGGACATGCCCATAATGACCGGTCCCGAGGTACGT-
---ACTTTAGCTAA------TTTC--CCATTTCTTTATCTTCCTTTTTT-GCTTTGACGTAACACATAT----TGGATGG
TCACCTCATCGACACAATATTTCCTGTACATG----TTGCTTGACAGGCCATTGTGAAGATCCGTGCTATGGGAGCCACT
GATGTGAAGATCGTCGGGGTTTCCGCTGATGATAACGCCATGGAGGCGTTCATGGGTGCCGGTGCTGATGATTTTGTGCC
CAAACCAGTGAGGCCTGAGATTCTGCAGCCTATGGTCCAGGAGGTCATCAACAAGAAGAAGAATTAACGGTGGTCTACGG
CAATCTTGCTTGCTTGATCCAGCCATCAAGAAAATGCTAAATGTTCTGCTAGCTCATGTCC-------------------
--GCACTATATT---------ATAATTGTGGTGTTATCTTTAGTTTCGAGGTCATGTTAAAGGTCGGACGCCATTAGCAA
GAAGAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>SNPs
---------------S-S-SSSS---------S---------------------------------------------S-
------------S--------------------SSSS-----S-------------------------------------
---------S---S---------------------------------------SS-------------------------
--------------------------S-S---------------------------------------------------
----S------------S-----S---S----------------------------------------------S-----
-----S---------S--------S--------------------------------S------S---------------
------------------------------S---S-SSS-SS----------------S---------------------
------------------------------SS-----------------------------------S------------
----------S---S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S----------SS-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------SS---------------------------------------------
--------------------S-----------------------------------------------------------
----------------------------------------------S---------------------------------
---------------------------------S-------------------------------------------S--
-----------------------SSS------------------------------------------S-----------
----------S----------S-S--------------------------------------------------------
------------------S----S-----S--------------------------------------------------
-------------------------------------------------------------------------S------
-------------------------------------------------------------SS-----------------
--------------------------------------------------------------------------------
------------S-SSSSSSSSSSSSSSS----------------------------------------S----------
------------------------S-------------------------------------------------------
----S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
------------------------------S--------------SSS--------------------------------
---------------------------------------------------SSSSSSSSSS------------S------
--------S--------S---------S---S------------------------------------------------
------------------------------------------SSS-----------------------------------
-------------------------S------------------------------------------------------
--------------SS--------S-------------------------------------------------------
----S---------------------------------------------------------------------------
-----------------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_406
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGACCGATCAAGGA
AGTGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>reverse_2209
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ACCTGCTGAATTGGCTCGAT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
