>input_sequence_77627
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--------------------------------------------------------------------------ACCCAC
CAGTGCAGTGCAAAAGAAAAAACCACACCAACGAACTTGGCCTCCATCCAAAAATATGGCGTCCAAGTCCAACTACAATC
TCCTCTTCGCGGCCCTCCTAGTCTTCATCTTTGCCGCCGTTGCCGCCGTCGGCAATGAAGATTGCACCCCATGGACGAGT
ACTCTGATCACTCCACTCCCAAGCTGCCGTAACTATGTGGAAGAACAAGCATGTCGTATCGAAATGCCCGGGCCGCCGTA
CCTCGCCAAGCAGGAGTGCTGTGAGCAGCTTGCAAACATTCCGCAGCAGTGCCGATGCCAGGCGCTGCGCTACTTCATGG
GGCCGAAGTCTCGCCCGGATCAGAGCGGCCTCATGGAACTCCCCGGATGCCCTAGGGAGGTGCAGATGAACTTCGTCCCA
ATACTCGTCACTCCGGGGTACTGCAACTTGACGACCGTTCACAACACCCCATACTGCCTCGGTATGGAGGAGTCTCAGTG
GAGCTAGAGACAATTCTCTCGCTCATGAATAAA-----------------------------------------------
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>chr4D_1_TraesCS4D01G325000
ATTCATCATATGTTTATTTCCTGCCCGTTTGCCACCTTGCTATGACAAACGATTCATGTGACTATTAGCATCCCTCTACC
TACTAGTATAACAAACTTGTTCAGAAACTTGTTGGGTGGGGTTAATCCTAAAGTTAAGCCACATATCCGGGCGGAAGTTT
ATGATTTTCCTTGGGCTTTATGGAACTACCGGGATGACTGTGTTTAACAGAGTCAAAGCACAAAACTTTTTGCAAATCAT
TTTCAGGGCTGCAACATGGATCTGTACATGTCTTTATTGCAGCATGGTTATGAGTATTGGGCGCAAGCGGTGGGAGGCAG
TTGCTCGGGTTAATTAAAACCGGTTTGGACGACGTTTCAATAATAGGCTATGTGTGTAGGCATATATTCCTATTTTCAGG
GGTTGTGGCTTCTTTTTGTTTATTTGATATCCAGACCGTGATGCTCATTGTTTAATAAATATGGTTTGTGTGCATCATAA
TGATGCAGAGGCAGAGAGGCCAGGGGTATCCTCCTTTTCAAAAAGAAAAAAGGTTTTGAGTCATAGCCGTCTATCTGTGC
AGACCTTTGATTTGCTATTAATTCCAAAAACAATGCTTTGCAAATTTGCTCACCCACACTGCCGTCA-------------
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-------------------CATGTTTGCTCTATCACAGGATGCAAAAACAAAGTCCGTTGTTGGGTTTAGCAACACTCCC
ACGCATAAACTAGCTAGCTTAATTGGTGCTCCACTTTCAAGTACTGATGACAACTTGACAACAGAAGAAAAGAATGCCAC
ATCAACCATGACCACAAAAGGCAGGCTCTAGCGGCTATGGATCTCTCACGGCTTCCCACGCTATAGCCAGCTTGCATTCC
CCTCCAAATTCAGTTCCAACTAATTAGTTAAGTGCACTCTAGTTCACCATCGTCGTTATGTAACACAACAAATTTAGTTA
ATTGCTACCAGCACTGCCTTTCTTACT--TTTCACGGGGTATATATCCATGCAAGTGTGGTACGTGCAGCATACACCCAC
CAGTGCAGTGCAAAAGAAAAAACCACACCAACGAACTTGGCCTCCATCCAAAAATATGGCGTCCAAGTCCAACTACAATC
TCCTCTTCGCGGCCCTCCTAGTCTTCATCTTTGCCGCCGTTGCCGCCGTCGGCAATGAAGATTGCACCCCATGGACGAGT
ACTCTGATCACTCCACTCCCAAGCTGCCGTAACTATGTGGAAGAACAAGCATGTCGTATCGAAATGCCCGGGCCGCCGTA
CCTCGCCAAGCAGGAGTGCTGTGAGCAGCTTGCAAACATTCCGCAGCAGTGCCGATGCCAGGCGCTGCGCTACTTCATGG
GGCCGAAGTCTCGCCCGGATCAGAGCGGCCTCATGGAACTCCCCGGATGCCCTAGGGAGGTGCAGATGAACTTCGTCCCA
ATACTCGTCACTCCGGGGTACTGCAACTTGACGACCGTTCACAACACCCCATACTGCCTCGGTATGGAGGAGTCTCAGTG
GAGCTAGAGACAATTCTCTCGCTCATGAATAAATAAGCATGTTGCGACCATACATGTGTGACATGCATATATACATATAG
GACGAGCTCCGCGCGCTCATCATGTGTGGTGCTATCTGCTATATATATGGATAATAAGAATAAAGGGAATCATTTTCGCT
TCTTAAACTCAACTCAGAGCTTTAATTCATGTCTTTGGTGGTTAAAATTATTAGAAAAATCGAGAACCGTCCAACTGCTA
ATAACATTTCTACATTTTTGTCCAGCTTTTTATTTCTT------------------------------------------
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-----------------------------------------------------------------GCCTCCAGTGTGACA
TCAATTCCAGACCGACAAATATTCTAGGCGCATGGATGGTAATTAAGGGAATCTGCTTCTTAAAGTTCATCTCGGATATT
TTATTCATGTGTTTGACTGTCGAAATCATTGGAAAAATCAAGAAGCGTCCAACTGTTAATAAAATTTCTAAATTTGTTTC
CTAGTTTTTTTTTATTTCTTGCCTCCAACGTGGCATCAATACTGGTCTGCCGAATCCTCTAGGCGCATGGCTAGGGTGCA
TTTATGCGGATTGTGGTGGAGTT-AATAGTTGTGCTATAGATGCAGTCCTGATATTTTGTCTCCAGCTTCCTCACCATTT
ATGTC-AGATGTTGGACAAGTTGTGTCCTTCGTTGTTGTAGTCGTAGTGGGAAGGGTACACTTTTAGCGTTGTTTGCTGA
AAGGCATTGTAATAGCCGCTTGGCTTGACTCATGATACACCTTTTCACGGTGTATTCGATAAAATGTTGCTTGATATTAT
GTGGTTGGCCCCTCAAATAT--GTGTTTGCGGCAACAGAAATTTATCATGAGTGACCTAAGGTTACCCATCCCACGAGCG
ATAATGGCAACAAATATTCTTTCTTAAGCAATGCCGAAACAAATACAATAACTTCTTTGCCCCAAACAATACTGTGTAGT
TG---------CTAGTCTTATACGTTGCAACAACATATGACTAAATAACAGTTTAAAAAGATCTGTGTAGATAATGTTAT
GGTAGATATTTATCGAAGTTTGGGATTATTAAA
>chr4B_582
TTCCA---------------------------------------------------------------------------
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---------------------------AAACAATGCTTTGCAAAGTTGCTCACCCACACTGCCGTCACATGTTTGCTATT
TTTTATTAAATAATACATTTATTTAATTAATTTGCATAAATATTACGCCGATATTTTTATTTTCAAAAATAATACACCAT
CGGCCCGCTGCAGGCCGACTGAGCCTAGTCGGCCCACCGCGGGCTGATTGGCCTCCAGTCGGCCCGCAACAAGTCGACTG
GGCACTAATTGGTTCGCAGCAAGCCAATTAGTTCCAGTCGGCTTGCTGCGGGCCGACTGGAAGCCAATCGGCCCGCGGTG
GGCTGACTAGGTGCATGTGGCCATTTTTTTTTCTGTTTTTGGTTTTAGTTGTTGTTTTCTATTTATTCTAGCTATCAAAT
GAATCTGGTTTCTGTTGAAACTTTTTGCATAAATTACTAGCAATATTAACAAGCCACATATAAATTTTCATAATTTTTGG
AAAACCACATTTTTACATTTGATAACTCCTGGTGAATATAGATAGGGTTTAAATTTAATTATCCAAATTGATTTTTTTAT
TTTTATAAATATTAAAATATTGAGAAGAATGGTTTAACATTTTTTTGAAACAATTTGAGGAATTTGTTTTGGCTTATGAA
ACAATTTGAAACAATATGAAACAATTTTTGTGAAACAGTTTGAGGAAAATTCTCAAATTGTTTCATAAACCAAAAAAAGT
ATTCTCAAATTGTTGCACAAAAAAATTTAAATTATTCTCCTCGATATTTTAACATCTATAAAAATAAAAAAACAATTTGG
ATAGATAAATTTATACCCTATCTATATTCACCAGGAGCTATCAAATACAATTGTAAAAATGTGGTTTTCCAAAAATTATG
AAAATTTATATGTGGCTTGTTAATATTGCTAGTAATTTATGCAAAAAGTTTCAACACAAACTATATTCATTTGATAGCTA
GAGTAAATAGAAAACAACAACTAAAACCAAAAATGGCCAAATGCACCTAGTCGGCCCATCGCAGGCCGATTGGCTTCCAG
TCGGCCTGAGGCCGACTGGACTAATTGGTTCCCAGCAAGCCAATTAGTCCCTGCGGTGGGCCGACTAGACTCAGTCGGCC
TGCAGCGGGCCGATGTTTTATTATTTTTAAAAATAAAAATATCGGCGTAATATTTATGCAAATTAATTAGAAAAATGTAT
TATTTAAAAAAATTAGCCACATGTTTGCTCTATCACAGCATGCAAAAACAAAGTCCGTTGTT-GGTTTAGCTACAGTCTC
ACGCATAAACTAGCAAGCTTAATTGATGCTCCACTTTTAAGTACTGATGACAACTAGACAAGAGAAGAAAAGAATGCCAC
ATCAACCATG----------GCAGGCTCTAGCGGCTAGGAATCTCTCACTGCTTACAGGCAAA-AGCCAGCTTGCATTCC
CCTCCAAATTCGGTTCCAACTAATTAATTAAGTGCACTCTAGCTCATCATAATCATCATATAACACTACAAATTTAGTTA
ATTGCTACCAGCTCTGCTTTTCTTATACCTTTCTAGGAGTATATATACATGCAAGTGTGGTACGTGTAGCATACACCCAC
CAGCGCAGTGAC-AAAACAAACCTATACCAACGAACTGGGCCTGTCAAAACAAATATGGCGTCCAAGTCCAACTGCGTTC
TCCTCTTGGCCGCCGTCCTAGTCTCCATCTTTGCCGCCGTTGCCGCCATCGGCAATGAAGATTGCACCCCATGGATGAGT
ACTCTGATCACTCCACTCCCAAGCTGCCGTGACTATGTGGAACAACAAGCATGTCGCATCGAAACGCCCGGGTCGCCGTA
CCTCGCCAAGCAGCAGTGCTGTGGGGAGCTTGCAAACATTCCGCAGCAGTGCCGATGCCAGGCGCTGCGCTACTTCATGG
GGCCGAAGTCTCGTCCGGATCAGAGCGGCCTCATGGAACTCCCCGGATGCCCTAGGGAGGTGCAGATGGACTTCGTGAGG
ATACTCGTCACGCCGGGGTACTGCAACTTGACGACCGTTCACAACACTCCGTACTGCCTCGCTATGGAGGAGTCTCAGTG
GAGCTAGAGACAATTCTCTCGCTCATGAATAAATAAGCATGTTGCGACCATACATGTGTGACATGCATATATGCATATAG
GACGAGCTCCGCGCGCTCATCATGTGTGGTGCTATGTGCTACATATATGGA---TAAGAATAAAGGGAATCATTTTCGCT
TCTTAAACTCAACTCAGATCTTTAATTCATGTCTTTGGTGGTCAAAATTATTAGCAAAATCTCCAACA--------GCTA
ATAACATTTCTACATTTTTGTCCAGCCTTTTATTTCCAGTGAGCAGCATATACAAGGCTATATTTGTAAATGATAAATAA
TAGTTGCCATGTACTGGCGAGGGAGCCATGTACTTGACTTTTTCTTTTGTCGTTCTGCCCGTCATTGGGGCTTGGGGGTG
TTTGATACTAATCTGTGATGTTGCTGCTACCTGCCTTATGGCTTTATTTATAAAGTCGGGTGTTTGCCTTTTCTCTAAAA
AATAAATAATAGTTGCCCGCATTCAGATCAATTATTGGGTAAATGGCAAATTGATCAAATGGGGTTGAAGGGTGGGCACC
AGGCAGATTCCGGATAAAATTATCCATACCACCACCCGCCCGAATATCCTCTAATATGCCCTGCCGCCTCCAATGTGACA
TCAATACCATACCGACAAATATTCTAGGCGCATGGATGATAATTAAGGGATTCTGCTTCTTAAAGTTCATCTCGGATATT
TTATTCATGTGTTTGATGGTCGAAATCATGAGAAAAATCAAGAAGCGTCCAACTGTTAATTTTTTTTTATAATTTGTTTC
CTAGTTTTTTAA-ATTTCTTGCATCCAACGTGGCATCAATACTGGT-TGCTGAATCCTCTAGGCGCATGGCCGGGGTACA
TTTATGCGGATTGTGGTGGAGTTAAATAGTTGTGCTATAGATGCAGTCCTGATACTC-----CCAGCTTCCTCACCATTT
ATGTCTAGATGTTGGACAAGTTGTGCCTTTTGTTGTTGTAGTCGTAGTGTGAATTGTACACCTGTAGCGTTGTTTGCTGA
AAGGCATTGTAATAGCCGCTTGGCTTGACTCATGATACACCTTTTCACGGTGTATTCGATAAAATGTTGCTTGATATTAT
GCCGTTGGCCCCTCAAATATAAGTGTTTGCGGCAATAGAAATTTTTCATGTGTGACCTAAGGTTACCCATCCCACGAGCG
ATAATAGCAACAAATATTCTTTCTTAAGCAATGCCAAAACAGATACGATAACTTCTTTGCCCCAAACAATACTGTGTAGT
TATCGATTACACTAGTCTTATAAGTCGCAACAACATATGAGTAAATAACAGTTTGAAAAGATCTGTGTAGATAATGTTAT
G------ATTTATCTAAGTTTGGGATTATTAAA
>SNPs
S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-----------------------------------
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--------------------------------------S-----------------------S--------S---S--S-
--------------S----------S-----------S-----------------S-----S------------------
----------SSSSSSSSSS-----------------S-S---------S----S-SSSSSS-S----------------
-----------S--------------S---------------S---S---SS--S-S--S------S-------------
------------S----S-------SS------SS--S--------S-------------------S-------------
---S------SSS--S-S---S-S-S-----------S-----SSSSSS-S-----------------------S-SS--
-------S--S---S---------S----------------------S---------------------------S----
------------------------------S-----------S-------------S-------S-------S-------
-------------S---------S-S------------------------------------------------------
-------------S------------------------------------------------------S-------SSSS
-----------S-----------------------------------S--S----------S------------------
------------------------------------------------------------------------S-------
-----------------------------------S-----S---------SSS--------------------------
------------------S-----------------------S-----------S------SSS---SSSSSSSSS----
--------------------------S---------SS------------------------------------------
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------------------------------------------------------------------------S-------
-----S---S----------------------------S-----------S-----------------------------
----------------SS-----------SS-----------------------------SSSS---SSS----------
----------SSS---------S-----------------------S---S--------------------SS----S--
------------------------------------------------------S-SSSSSS------------------
-------------------------S-S--S------------------S---SS------S-S----------------
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-SS--------------------------------S--------S-----S-----------------------------
-----S-----------------------------S-----S----S---------------------------------
-S--------------------S--S--------------S-------------S-------------------------
-SSSSSS-------S------------------
>forward_261
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-TTCAGGGCTGCAACATGGAT-----------------------------------------------------------
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>reverse_2424
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-----------------------AGCAGCTTGCAAACATTCCG-------------------------------------
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>forward_2237
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---------------------------------------------------------GGCGTCCAAGTCCAACTACA---
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>reverse_3578
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---------------------------------------------------------TGTCTCCAGCTTCCTCACCA---
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---------------------------------
