>input_sequence_77623
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-----------------------------------ATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGC
GGCTCCTTCGACTTGATCCGCATCGTCCACCTCAACGGCCACATCGAGGAGTACTCGCGCCCGGTCACCGCCGGCGAGGT
CATGGCGGCGCACCCCAGCCACGTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACCCCG
ATTCGGAGCTGGAGCGGGGGTGCTTCTACTTCCTGGTGCCGACCTCGTCGGTGCCGGAGAAGAAGAGGAAGCCGTCGTCG
CAGCCACAACAGAAGAAGGTGCGGTCATCGTCCACGTCGAAGCCGACGAGCGTGCCGAGCAGTGCGGGCGCCGGCGCCGG
CGCTAATAAGGTGACGAAAGACCGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAGGGCAAGGCCAGGTGCA
AGCGCAGCCGGAGCGTCCGCGCGACAGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGA------
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>chr4A_1_TraesCS4A01G114800
CATGCAAAAGATTACAACCAAAGTGATGCATTGAAGTATTTGTGTTTATAGTTTCTGGAAAAGGGAACTGTATATTAACC
GTATTGAAGTCTTAGTAGAAATATTCTAGGGTATATATACACCCCTA------AGCG------GGAGTTTCAAAATAACC
ACACACCTATGATAATGGATCAC-GAGTTTATGTTTATACTACTCCCTCCATTCCAAATTAGCTAGTGTATTAGAGTTCG
TTAGGATAAGCATTTGACCAACAATTACTATATTAATACA-----CACATGTGTGATATAAAGTTCTCTTTT-GCAAAAT
TATGCGCCATAAAGTTGATATCATTTGTATTTTAAAGTACTCATTTGTGGTTATGATTTCTTATCACGAAAGTTATATCA
TAATAGTGTAATTGTCCGGAAAAGGCTTATTCCAACGAAACCTAATACACTACTCCATAATTTCAACCGAGGGAGCAGGG
ACTGTTTTGAGGCACAAATTATTCACTCTTGAAAAAAAATGTTACTCCCTCCGATCTGAATTAATTGACGCAACT-----
------------TTATACTAAAGTTGTACTAAAGCTGCCTGAACAAATTTGGATCGTAGGGAGTAGTACTAATTTTTAGG
GGGATCAATATGCAACTATTTTTAGAGGAATTAATACCG-------TTTTAGATAATTAATACAATACAACTTTAGTATA
AAGTTGTACTAAAGCTGTGTCAACTAATTTGGATTGGAAGGAGTAGCACTATTTTTTAGGGAAATTGATATGCAACTATT
TTTTAGAGGAATTAATATAACAATATTTTTAGAGAAATAA----------------------------------------
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--------------------------------------------------------------------ATTTGCTACTTT
GT---TACATTTTTTTCCTGCACAATAGAACCCTTGCACTTGTGCAACAACTGGAACCTCTCACCTATATAAAGGCAGTG
GCACACAGACATGCCCAAGAGCCAAAGTAAGGCGCAAGACTAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAAC
GTTTAGCCGCCGGCCGGCAAGAAGCCAAGAA-AGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGC
GGCTCCTTCGACTTGATCCGCATCGTCCACCTCAACGGCCACATCGAGGAGTACTCGCGCCCGGTCACCGCCGGCGAGGT
CATGGCGGCGCACCCCAGCCACGTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACCCCG
ATTCGGAGCTGGAGCGGGGGTGCTTCTACTTCCTGGTGCCGACCTCGTCGGTGCCGGAGAAGAAGAGGAAGCCGTCGTCG
CAGCCACAACAGAAGAAGGTGCGGTCATCGTCCACGTCGAAGCCGACGAGCGTGCCGAGCAGTGCGGGCGCCGGCGCCGG
CGCTAATAAGGTGACGAAAGACCGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAGGGCAAGGCCAGGTGCA
AGCGCAGCCGGAGCGTCCGCGCGACAGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTG
CTGTGTTAGC-TTGGTCCCTGTTGTACATACGGGTCTGG-TCTGGTTGTGCACGGTGTACCGTGCACGTACAAGGACGAC
CGAACGGCGCCGCGTAGCCATGCGTGACGTGGTGGGCGGTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGC
GATCGCCGCCGGCTGCCTCTCCCTTGGTAGTTTTTCTCACTCTCTCGGTGTTTTTCCAGCTCTTTTCACTGCCGGCCAGA
TCGGGCTGCTTTGAAGGCAGTGAGAGTAGCT-GGTTTGGGTTGCCCTCGATGGCAGAGAGAACAGGAGAAGCAGAAAACA
AGACTGCAAGAG---CTTTTTTTT-ACGGATGTAATGACAAGAAGCCAGAAAAGTTCAGCAGAAACTTCAATATTGTTGT
CCATCTTGTCAGGATATAT-------------------------------TACGTGCGTTGTTCAGCTCTGATGCATCCT
CCAATGAGCTATACTCCTGTGTACGTAT----------------------------------------------------
---------------------------------------------AGGTTCCAGGAAACTTCCTGAATCGCACGGTAATC
AGTAGCCAGACGACGGCAGGTTCCCGTTGGTTTTTGCGGGTGGCTCATCCCTTTCCCATATTTTCTTCTTCAGATTTAGC
TGCCCCGTGAACTAAATACCGGAGCACACGAAACATATATACATCTAATCCAAATAGGGTCTCGGTCTCCACTGGTCTTG
TCTAGAACTTGCTGCTAATCAGTCAAAACAAGTCGCAAAATTGCGTCGAGTTGTATGGAAGGGGACGAAAGCTTTTTGTC
CGATGCAGGCATGAAACAAGGGGAGCTTTTTCTCCGTCACGTCCGGACATCCGGTGGTATGAGCTGTACCTCAGGTTAAA
CAACAGTGAAGCGGCTCTAGCCCCAAGTGAGCACGAGAAGCCACCCTTCAACACTCTGCCAAGTGGCAAGGGAAGTGCCA
GTGCCAATGCGTCCAGCTCCATGGAAGCACTCCTTTGTGTGTGTGGGCCGAGAGAGTAGTAATAAGGCTGGTCATAGTGG
GAAGTAACT
>chr4B_1
CATGCAAAAGGTTACAACCAAAGTGATACATTGAAGTATTTTCGTTTATAGTTTCTGGAAAAGGGAACTATATATTAACC
ATACTGAAGTCTTAGTAGAAATATTCTAGGGTATATATACGCCCCTAGGCTGTAGCG------GGAGTTTAAAAATAACC
ACACACCTATGATAATGGATCTAC-AGTTTATGTGTA---TACTCCCTCCATTCCAAATTACCTAGTGTATTAGAGTTCA
CTAGGACAAGCATTTGACCAACAAATACTATGTTAATAAAAACATCATATATATGATATAAAGTTCTCTTTTTGCAAAAA
TATGTGACATAAAGTTGATATCATTTGTATTTTAAAGTACTCATTTGTGGTTATGATTTGTTATCACGAAAGTTACATCA
TAGTAGTGTAATTGTCCAGAAAAGGCTTGGCCCAACGAAACCTAATACGCTACTCCATATTTTGAACCGAGGGAGTAGAG
GCTGTTCCCAGGCACAAATTATGCACTCTTAC--AAAAATGTTACTCCTTTTGATCCAAATTAATTGACGCATCTTTAAT
AGTACAACTTTATTGTACTAAAGTTGT-----------GTCAGTTAATTTGGACCGGAAGGAGTAGTACTATTTTTTAGT
GGAACTGATATGCAACTATTTTTAGAGGAATTAATACAGTGCTATTTTTTAGAGAATTAATACAGTACAACTTTAGTATA
AATTA-TACTAAAGCTGCGTCAACTAATTTGGATCGCAAGGAGTAATACTAATTTTTAGGAGAATTAATATGCAACTATT
TTT-AGAGGAATTAATACAGTACTAGTTTTAGAGAACTAATACAGTAGTATAACTTTTGTATTATAAAGTTGCACTAAAG
CTGCGTCAACTAATTTGGATAGGAGGGAGTAGTACTAATATTTAGGGGCAGTGGTATCCCCAACCCATCAGATTCCAAAT
CCTGATGCTCGCATTGTTTCTGGATTTATTTTAGGATTTTCGGCGATGTGCTTTCAGTGGGAGGAGACGATCCCGTCGAT
GACGAGGCGCATACGGTGACTTTGTAAATCTCATGATGATATGTCGGTTCAGTCTCTCGGAGGTGCTAATAGGGGTAGGA
TGTGCGTGTGTGCGTTCATAGGGGTGAGTGTATGTGCGTGTATATGAGCGCTTGTGTCTGTACTGATGCTCAAAAGAAAA
ATCTTTAGGGGAATTGATATGCAACTATTTTTAGAGGAGTTAATACAGTACTATTTTTTGGGAAATAAATTTGCTACTTT
GT---TACATTTTTTTCCTGCACAATAGAACACTTCCACTTGTGCAACAACTAGAACCTCTCCCCTATATAAAGGCAGTG
GCACACAGACATGCCCAAGAGCCAAAGTAACGCGCAAGACCAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAAC
GGTTAGCC---GGTCGGCAAGAAGCCACACAGAGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCGTGC
GGCTCCTTCGACTTGATCCGCATCGTTCACCTCAATGGCCACATCGAGGAGTACTCCCGCCCGGTCACCGCCGGCGAGGT
CATGGCGGCGCACCCCAGCCACGTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACGCCG
ATTCGGAGCTGGAGCGGGGGTGCTTCTACTTCCTGGTGCCGACCTCGTCAGTGCCGGAGAAGAAGAGGAAGCCGTCGTCG
CAGCCACAACAGAAGAAGGTGCGGTCATCGTCCACGTTGAAGCCGACGAGCGTGCCGAGCAGTGCCGGCGCCGGCGCC--
----AATAAGGTGACGAAAGACCGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAAGGCAAGGCCAGGTGCA
AGCGCAGCCGGAGCGTCCGCGCGACGGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTC
TTGCGTGAGCTTTGGTCCCTGTTGTACATACGGGTCTGGGTCTGGTTGTGCATGGTGTACCGTGCACGTACAAGGACGAT
CGAACGGCGCCGCGTAGCCATGCGTGACGTGGTGGGCGCTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGC
GATCGCCGCCGGTTGCCTCTCCCTTG-TAGTTTTTCTCACTCTCTCGGTGTTTTTCCAGCTCTTTTCACTGCCGGCCAGA
TCGGGCTGCTTTGAAGGCAGTGGGAGTAGTTGGGTTTGGGTTGCCCTCGATGGCAGAGAGAACAGGAGAATCAGAAAACA
AGTCTGCAAAAG---TTTTTTTTTTACGGGTGTAATGACAAGAAGCCAGAAAAGTTCAGCAGAAACTTCAACGTTGTTGT
CCATCTTGTCAGGATATAT-------------------------------TACGTGCGTTGTTCATCTCTGATGCATCCT
CCAGTGAGCTGTACAC----------------------------------------------------------------
---------------------------------------------AGGTTTGAGGAAACTTCCTGAATCGCATGGTAATC
AGTAGCCG---GACGGCAGGTTCCCGTTGGTTTTTGCGGGTGGCTCATCCCTGTCCCATATTTTCTTC---AGATTTAGC
TGCCGCGTGAACTAAATACCGGAGCAGACGAAAC----ATACATCTAATCCAAACAGGGTCTCGGTCTCCACTGGCCTTG
TCTAGAACTTGCTGCTAATCAGTCAAAACAAGTCGCAAAATTGCGTCGAGTTGTATGGAAGGGGACGAAAGTTTTTTGTC
CGATGCAGGCATGAAACAAGGGGAGCTTTTTCTCCGTCACGTCCGGACATCCGGTGGTATGAGCTGTACCTCAGGTTAAA
CAACAGTGAAGCAGCTCTAGCCCCAAGTGAGCACGAGAAGCCACCCTTCAACACTCTGCCAAGTGGCAAGGGAAGTGCCA
GTGCCAGCGCGTCCAACTTCATGGAAGCACTCCTTTGTGTGTGTGGGCCGAGAGA-------------------------
---------
>chr4D_1
CATGCAAAAGATTACAACCAAAGTGATACATTGAAGTATTTATGTTTATAATTTCTGGAAAAGGGAACTATATATTAACC
GTATTGATATCTTAGTAGAAATATTCTAGGGTATATATACGCCCCTA------AGCTATAGCAGGAGTTTCAAAATAATC
ACGCACCTATGATAATGGATCTATGAGTTTATGTTTATACTACTCCCTCCATTCCAAATTACCTAGTGTATAAGAGTTCA
TTAGGACAAGCATCTGACCAACAATTACTATATTAATACAAACGCCATATATGTGATATAAAGTTCTCTTTTTGAAAAAA
-ATGTGACATAAAGTTGATATCATTTGTATTTTAAAGTACTCATTTGTGGTTATGATTTGTTAACACGAAAGTTACATCA
TAACATCACAATTGTCCGGAAAAGGCTTGTCCCAACGAAACCTAGCACGCTACTCCATAATTTGAACCGAGGGAGTAGAG
GCTGTTATGAGGCACAAATTATGCACTCTTGAAAAGAAATGTTACT----------------------------------
------------------------TGTACTCAAGCCGCGTCAATTAATTTGGACCGTAGGGAGTAGTACCATTTTTGTGT
GGAATTGATATGCAACTATTTTTAGAGGAATTAACATGGTACTATTCTTAGAG---------------------------
----------AAAGCCGCGTCAACTAATTTGGATCGCAGAGAGTAGTGCTAATTTTTAGGAGAATTAATATGCAACTATT
TTT-AGAGGAATTAATACAGTACTAGTTTTAGAGAACTAATACAGTAGTATAACTTTTGTACTATAAAGTTGTACTAAAG
C-GCGTCATCTAATTTGGAAAGGAGGGAGTAGTACTAAT-----------------------------------------
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--CTTTAGGGGAATTGATATGCAACTATTTTTAGAGGAATTAATACAGTACTGTTTTTAGGGAAATAAATTTGCTACTTT
GTTACTACATTTTTTTCCTGCACAATAGAACACTTCCACTTGTGCAACAACTAGAACCTCTCCCCTATATAAAGGCAGTG
GCACACAGACATGCCCAAGAGCCAAAGTAAGGCACAAGACCAGCCAGCAGGGAGAGTTTTTCCATTGCTAATCAAGCAAC
GTTTAGCC---GGGCGGCAAGAAGCCAAGAA-AGCATGGGCAACAGCCTGCGGTGCTGCCTGGCCTGCGTCCTCCCCTGC
GGGTCTTTCGACTTGATCCGCATCGTCCACCTCAACGGCCACATCGAGGAGTACTCCCGCCCGGTCACCGCCGGCGAGGT
CATGGCGGCGCATCCCAGCCACGTGGTGAGCCGGCCGTGCTCCCAGGGCGGCGCGCGGCGGATCCTCATTGTCGACCCCG
ATTCGGAGCTAGAGCGGGGCTGCTTCTACTTCCTGGTGCCGACCTCGTCGGTGCCGGAGAAGAAGAGGAAGCCGTCGTCG
CAGCCACAACAGAAGAAGGTGCGGTCATCGCCCACGTTGAAGCCGACGAGCGTGCCGAGCAGTGCCGGCGCCGGCGCC--
----AATAAGGTGACGAAAGACCGCGGCGCCGGCGACAGCTACCTGGCGGAGGTGCTGTCGGAGGGCAAGGCCAGGTGCA
AGCGCAGCCGGAGCGTCCGCGCGACGGTGTGGCGGCCGCATCTTCAGATCATCCCGGAAGAAGCTCTCGAGTGAAATCTG
CTGTGTTAGC-TTGGTCCCTGTTGTACATACGG------GTCTGGTTGTGCATGGTGTACCGTGCACGTACAAGGACGAC
CGAACGGCGCCGCGTAGCCATGCGTGACGTGGTGGGCGGTGATGGCCGTTGGGTCGTCCAGTTTTAGGTGAGAGGCCGGC
GATCGCCGCCGGCTGCTTCTCCCTTG-TAGTTTTTCTCAGTCTCTCGGTGTTTTTCCCGCTCTCTTCACTACCGGCCAGA
TCGGGCTGCTTTGAAGGCAGTGAGAGTAGTTGGGTTTTGGTTGCCCTCGATGGCAGAGAGAACAGGAGAAGCAGAAAACA
AGTCTGCAAAAGCTTTTTTTTTTTTACGGATGTAATGACAAGAAGCCAGTAAAGTTCAGCAGAAAATTCAATTTTGTTGT
CCATCTTGTCAGGATTACGTTTTATTTTTTTGAGCAAATCTTGTCAGGAGTACGTGCGTTGTTCATCTCTGATGCATCCT
CCAATGAACTGTATATATACTCCCTCCGTTCCAAAATAGATGACTCCATTTTATACTAACTTTGTATTAACTATAGTACA
AAGTTAGTATAAAGTGGAGTCATCTATTTTGAAACGGAGGGAGTAAGGTTTCAAGAAACTTCCTGCATCGCACGGTAATC
AGTAGCCG---GACGGCAGGTTCCCGTTGGTTTTTCCGGGTGGCTCATCCCTGTCCCATATTTTCTTC---AGATTTAGC
TGCCGCGTGAACTAAATACCGGAGCACACGAAAC----ATACATCTAATCCAAGCAGGGTCTCGGTCTCCACTGGTCTTG
TCTAGAATTTGCTGCTAATCAGTCAAAACAAGTCGCAAAATTGCGTCGAGTTGTATGGAAGGGGACGAAAGCTTTTTGTC
CGATGCAGGCATGAAACAGGGGGAGCTTTTTCTCCGTCACGTCCGGACATCCCGTGGTATGAGCTGTACCTCAGGTTAAA
CAACAGTGAAGCGGCTCTAGCCCCGAGTGAGCACGAGAAGCCACCCTTCAACACTCTGCCAAGTGGCAAGGGAAGTGCCA
GTGGCAGCGCGTCCAACTCCATGGAAGCACTCCTTTGTGTGTGTGGGCCGAGAGAGTAGTAATAAGGC------------
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>SNPs
---------------------------S-------------S---------------------------S----------
----------------------------------------S---------------------------------------
---------------------SS--------------------------------------S-----------------S
------S----------------------------------------S--S----------------------------S
----S-S----------------------------------------------------S---------------S----
----------------------------S-S-----------------S--------------S-----------S--S-
S-----S---------------S-------------------------S-SS----SS--------------S-------
--------------S---------------S----S--S-S--SS--------S-----------------S-------S
--S--SS------------------------------S---------------S----------S---------------
--S-SS-----------S----------------S-S---------S----S--------SS----S-------------
---S-------------S-SS-S--S----------S-------------------------------------------
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-------------------------------S---S----------------S---------S-----------------
----------------------------------------S---------------------------------------
--------SSS--S------------------------------------------------------------------
--------------------------------------------------------S-----------------------
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-------------------------------------S---------------------------S------------SS
SSSS----------------------------------------------------------------------------
-------------------------S------------------------------------------------------
----------------------------------------------------S---------------------------
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--------------------------S-----------------------------------------------------
-----------------------------S--------------------------------------------------
--S------S-----S--------------------------------------------------------S-------
-----------------------------------------------------------------S--------------
----------S---S-S-SSSSS-SSSS----------------------------------------------------
--------------------------------------------------S-----------------------------
-------SSSS-----------------------------------------S---------------SSS---------
----S-----------------------------SSSS----------------S-------------------------
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------SS-------S----------------------------------------------------SSSSSSSSSSSS
SSSSSSSSS
>forward_479
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-----------------------------------------------------------ATTTCAACCGAGGGAGCAGG-
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>reverse_2775
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------------------------------------------------------TAGGGTCTCGGTCTCCACTG------
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