>input_sequence_77602
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-------------------------------------------------------------------ATGAGCAAG----
--CCACTCCTCGAGCTGATGGCGGCCGTCGACGCCAGCCCTGTTGC---CGCGGAGGACGACGGGGCTAACCTGGTATCC
CGACGCCGTGCGAGCTACGGCCGCAGCCGACAGACCGTGCCGGTGGTGGC---------------ACCGCAGACCCCGCC
CGCGTCGTCGACGGAGACGGACGCCAGCTTCGAGTTCAGCGCCGTGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TGTTCTCGGACGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCACCGGCGGGCTGCAGCCGGGTCGCGTCGCCG
GTGCTGGGCTCATCCGTGGGTGGCACG------------ACCGGGAGCAAGAAGCGTGTCAGCTTCGCGGCGGACGGCGC
GGGGAAGACGGCGGCCAAGTCCGGCGGCGCGCAGAAGAAA---GGCGGCGGCATGCTCGGGTGCATCGGGTCAGCGTGCG
GGCTGTCCCGTGACGAAGTGGTGGAGCCGACCATCAACGCTAATCGTAAGGTTGTGTGTGTTTGA---------------
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>chr2A_1_TraesCS2A01G183500
CACCTCACATGTAAAACTCTCTTGAATTATATGGACACCTCATAAAATCACTTCTAGATGTAGTTCTTTTTCATTATTTA
GAGGGAGTTTTTTATGGCACGGTCGAAGATGCTCTAAGAGCCTAGCATTGAGAGTGCCTTAAGATCTCCTATTTAATCCT
CCGCTAAAAAAATCACTGATTGCTGCTAGTTATTTGTTACTGGTTGCTGCACATCTATACGATGTATGGTTCGTTTGCTT
TTGTTTCTGATTTTGGTAATGGACGGTCAAGAGTACTTTTAATCTTTTGCAAAGTGATGTCCGCTTGCATTATTTGCACT
GGACCAAAGAAGAACAAATTGATCTTGAAAAGCATGAAGAATAACAAACTGATCTCAAAGGGCCCGAAGAAGAACAAATT
GCCTCCATTATGTAGAAAATGAGGCAAAATAGGGATTGTGAGAGATATGAGAGGTGATCATGTATTTATATACTGTAGAT
CTGAATAGCAGACGTTGGGTTTCAAATGGTAGTTATAAAATATTCTTAATATAGAACAAGGGAAATGATTTAGGGGAACT
GCTGGAATCAGAAATTTTTTAGGAGAGAATATTATAACTTATAAGGGAGTCCCCGATTTTAAGATATAGGGGAATTTTTT
TAGAGGAACTGCTGAACTTGCTCTAAGAAAAGATGTGTCTACAAGACTAAACTCCCGCTTTCTTAAAAAGCCGGCCACAG
CAGCACTCGGTCCACTTCTCCCGCGACAACCGCAAAAGACGGCGGTGGCCATGCCTAGTTCCAAACCCTGGCATACGCCA
TCGTTTATACCAACGCCGCGACATCATGACCT----CTTTGTTTCTATCACCGCCCTTGCCACTAAAACCACACACATCA
TTTGTATGCTTCTGCTCGCGACGCCCATTACTTATATACCCGCGATTAATCTGTAACACTGCACACACGAGCTTCGACC-
----------------------ACCAGTCGAGGTAGCACAGCAGGCATCCCTCGGTTTTCTGCAACCATGAGCAAG----
--CCACTCCTCGAGCTGATGGCGGCCGTCGACGCCAGCCCTGTTGC---CGCGGAGGACGACGGGGCTAACCTGGTATCC
CGACGCCGTGCGAGCTACGGCCGCAGCCGACAGACCGTGCCGGTGGTGGC---------------ACCGCAGACCCCGCC
CGCGTCGTCGACGGAGACGGACGCCAGCTTCGAGTTCAGCGCCGTGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TGTTCTCGGACGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCACCGGCGGGCTGCAGCCGGGTCGCGTCGCCG
GTGCTGGGCTCATCCGTGGGTGGCACG------------ACCGGGAGCAAGAAGCGTGTCAGCTTCGCGGCGGACGGCGC
GGGGAAGACGGCGGCCAAGTCCGGCGGCGCGCAGAAGAAA---GGCGGCGGCATGCTCGGGTGCATCGGGTCAGCGTGCG
GGCTGTCCCGTGACGAAGTGGTGGAGCCGACCATCAACGCTAATCGTAAGGTTGTGTGTGTTTGATTGTTGAATTTGGCA
GTAGGTGATCTTGCGTATGCCC----GCTTGTGCATTCCAGTTTGTGTTGTTTTGTCCGCCCTGCTTTGATTAATTTTCC
TTTGTCGTCACGGCCTCACGGGTGATGGATTCTTTTGGCGCTGCTGTCATCAACCTTGATGAGTGTCAGCTGTATGTATT
TCCACAGCTTTCCCCAAATGCTGAACGTTGCAATAAACGTTTCAAATGGCCAAACCCAGGCAGAATCGTACTCTTTTGCA
TTGCTGCCGGCTAGTCCTTTTATCATCCTTGGCACAGGAGCTAAGACCATCTTCAACTCAAAAATAAAAAAAAATAGGCA
CCCAATCCTCCTACTCGAGGTGGACATCCCGGACAGGAGCAGAAAAAAGCCTACCAAACCAAGGGCTCCAAATCCCCCTC
ATTTGTTCAAATGTATCACGTATGCAAACCCCCCTCATTTGTTCAAATGTATCACGTATGCAAATCCCCAAACGCATCCC
AGACAGAACCTGCTACTCTGGAGGCATGCGCGTGCAGAGAAACTTTAGCTCTTGCGGAGAACCTGGCCGTCTCAAAAACA
CACATTGCATCCGACTCTCTGAGAGTCATAAACGACCTAAAGAGCGAGCGAAACATAGACGAGTACTGCATGATCCTAGA
GAGATTGACAATAGAAAGACGAGACTACAAAGTTGCGAGTTTGTCCACAAACACCTCACAAGAAATGATGAGGCACAGAG
ATTAGCTAGATCATCCACTACACTTGTATTGGTAGACATGTGTGGCTTATTGATCCACCGGATCACATTTGTATCCCTTT
AAACATTATTGAATGAAATAGAGTGCGGTGTTCTTCTCAAAAAAATGTGGGGAGGAAATGGGGTATCCATGCATGTTCAG
CCTGCCACGTCGAACACAGTCCACCCCAGGACCACTTTCGCTCTTTCTTTTGTCTCTCTTCATCTCCACAAATTATATGC
ACATGTCCGAACAATTTTGGGGGACTTAA
>chr2D_598
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-------------------------------------CTTTTAAGGGAGTCTCCGATTTTGAGATATAGGGAATAAATTT
TAGTGGAACTGCTGAACTTAC----------GATGTGTCTACAAGACTAAAC---CGCTTTCTTGAAAAGCCGGCCACAG
CAGCACTCGGTCCACTTCTCCCGCGACAACCGCAAAAGACGGCGGCGGCCATGCCTCGTTCCAAACCTTGACATACGCCA
TCGTTTATACCAACGCCCCGACATCATGACCT----CTTTGTTTCTATCACCGCCCTTGCCGCTAAAACCACACACATC-
TTTGTATGCTTCTGCTCGCGACGCCCATTATTTATATACCCGCGATTAATCTGTAACACTGCACACATGAGCTTCGACAA
TCAAGTAGTAGGAGCAAGAAGTACCAGTCGAGGTAGCACAGCAGGTATCCCTCGGTTTTCTGCAACCATGAGCAAG----
--CCACTCCTCGAGCTGATGGCGGCCGTGGACGCCAGCCCTGTGGC---CGCGGAGGGCGACGGGGCTAACTTGGTATCC
CGACGCCGTGCGAGCTACGGCCGCAGCCGACAGACGGTGCCGGTGGTGGC---------------GCCGCAGATCCCGCC
CGCGCCATCGACGGAGACGGACGCCAGCTTCGAGTTCAGCGCCGTGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TGTTCTCGGACGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCACCGGCGGGCTGCAGCCAGGCCGCGTCGCCG
GTGCTGGGCTCATCCGTGGGTGGCACG------------GCCGGGAGCAAGAAGCGTGTCAGCTTCGCGGCGGACGGCGC
CGGGAAGACGGCGGCCAAGTCCGGTGGTGCGCAGAAGAAA---GGCGGCGGCATGCTGGGGTGCATCGGGTCAGCGTGCG
GGCTGTCTCGTGACGAAGTGGTGGAGCCGACCATCAACGCTAATCGTAAGGTTGTGTGTGTTTGATTGTTGAATTTGGCA
GTAAGTGATCTTGCGTATGCGCGCTAGCTTGTGCATTCCAGTTCGTGTTGTTTGGTCCGCCCTGCTTTGATTAATTTTCC
TTTGTCGTCACGGCCTCACGGGTGATGGACTCTTTTGGTGCTGCTGTCATCAA---------------------------
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>chr2B_706
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-----------------------------------------------------------------AAAAGCCGGCCACAG
CAGCACTCGGTCCACTTCTCCCGCGACAACCGCAAAAGACGGCGGCGGCCATGCCTCGTTCCAAACCTTGACATACGCCA
TCGTTTATACCAACGCCCCGACATTATGACCT----CTTTGTTTCTATCACCGCCCTTGCCGCTAAAACCACACACATC-
TTTGTATGCTTCTGCTCGCGACGCCCAT-ATTTATATATCCGCGAATAATCTGTAACACTACACACACGAGCTTCGACTA
TCAAGTAGTAGGAGCAAGAAATACCAGTCGAGGTAGCACAACAGGTATCCCTCGGTTTTCTGCAACCATGAGCAAG----
--CCACTCCTCGAGCTGATGGCGGCCGTGGACGCCAGCCCTGTGGC---CGCGGAGGACGACGGGGCTAACTTGGTATCC
CGACGCCGTGCGAGCTACGGCCGCAGCCGACAGACCGTGCCGGTGGTGGC---------------GCCGCAGACCCGGCC
CGCGTCGTCGACGGAGACGGACTCCAGCTTCGAATTCAGCGCCGTGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TGTTCTCGGACGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCACCGGCGGGCTGCAGCCAGGTCGCGTCGCCG
GTGCTGGGCTCATCCGTGGGTGGCACG------------ACCGGGAGCAAGAAGCGTGTCAGCTTCGCGGCGGATGGTGC
CGGGAA---------GAAGTCCAGCGGCGCGCAGAAGAAAGGCGGCGGCGGCATGCTGGGGTGCATCGGGTCAGCGTGCG
GGCTGTCTCGTGACGAAGTGGTGGAGCCGACCATCAACGCTAATCGTAAGGTTGTGTGTGTTTGATTGTTGAATTTGGCA
GTAAGTGATCTTGCGTATGCGCGCTAACTTGTGCATTCCAGTTCGTGTTGTTTGGTCCGCCCTGCTTTGATTAATCTTCC
TTTGTCGTCACGGCCTCACGGGTGATGGAGTCATCAAGACACCTAAATTTCTTTCGTC----------------------
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------------------------------------------------------------------------TCCCCCTC
ATTTGTTCAAATGTATCACGTATA------------------------------------CAAATCCCCAAACGCAGCCC
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>chr6A_796
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---------------------------------------------------------------------------CGCCA
TCGTTAATACCAACGCCCCGACATCCATAAGAAACCCTTTGTTTCTATCACCACCCTTGCCGCTAAAACCACGCACATC-
TTTGTACGCTTGTGCTCGCCATGCCCGT-ATTTATATCCAAGGTTAAGCCATGAGGTTTCCATCACTTGGTAAGTT----
-------------------------------------------GGTATCCCTCGGGTTTCTGCTACAATGAGCAAGCCAC
GGCCACTCCTCGAGCTGATGACGGCCGTGGACGCCGGCCTTGTAGCTGCCGCGGACGCCGACGGGGCTAGCGTGGCGTCC
CGATGCCGTGGGAGCCGCAGCCGCAGCCGCCAGACCGCGCCGGTGGTGGTGGCG---------GTGCCGCAGACCCCGCC
CG---------CGGAGACCGACGCCAGCTTCGAGTTCAGCGCCGCGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TGTTCTCGGCCGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCTTCACCGGGCGGCAGCGAGGTGGCGTCGCCG
GTGCTGAGCTCATCCATGGGTGGCACGGAGTCGGCGTCGACCGGGAGCAAGAAGCGTGTCAGCTTCACGGCGGATGGTGC
GGGGAAGACGGCGGCGAAGCCCGGCGGCTCGCAGAAGAAA---GGCGGCGGCCTGCTGGGGTGCATGGGGTCAGCGTGCG
GGTTGTCGCGTGACGAGGTCGTGGAGCCGACCATGAACGCTAATCGTAAGGTTGTGTGCGCTTGAT--------------
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>chr6D_977
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-------------------------------------------GGCATCCCTCGGGTTTCTGCAGCCATGAGCAAGCCCC
GGCCACTCCTCGAGCTGATGACGGCCGTGGACGCCGGCCTTG---CAGCGGCGGACGTCGACGCAGCTAACGTGGCGTCC
CGACGCCGTGGGAGCCGCAGCCGCAGCCGGTAGACCGCGCCGGTGGTAGTGGCA---------GTGCCGCAGACCCCGCC
CG---------CGGAGACCGACGCCAGCTTCGAGTTCAGCGCCGCGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TGTTCTCGGCCGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCTTCACTGGGCGGCAGCGAGGTGGCGTCGCCG
GTGCTGAGCTCATCCATGGGCGGCACGGAGCCGGCGTCGACCGGGAGCAAGAAACGTGTCAGCTTCACGGCGGACGGCGC
GGGGAAGACGGCGGCGAAGCCCGGCGGCGCGCAGAAGAAA---GGCGGCGGCCTGCTGGGGTGCATGGGGTCAGCGTGCG
GGTTGTCGCGTGACGAGGTGGTGGAGCCGACCATGAACGCTAACCGTAAGGTTGCGTGTGCTTGATTTTT----------
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>chr6B_977
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-------------------------------------------GGCATCCCTAGGGTTTCTGCAGCCATGAGCAAGCCAC
GGCCACTCCTCGAGCTGATGACGGCCGTGGACGCCGGCCTTGTAGCTGCCCCGGACGTCGACGGGGCTAACGTGGCGTCC
CGACGCCGTCGGAGCCGCAGCCGCAGCCGACAGCCCGCGCCGGTAGTAGTGGCGGTGCGGCCGGTGCCGCAGACCCCGCC
CG---------CGGAGACCGACGCCAGCTTCGAGTTCAGCGCCGCGATCAGCAACAGCTCGGCGTCGCCCGCCAGCATGG
TCTTCTCGGCCGGCCAGCTCCGGGCGCACCAGTTCCCCGCCGTGCGGTCTTCAGCAGGCAGCAGCCAGGCGGCGTCGCCG
GTGTTGAGCTCATCCGTGGGTGGCACGGAGTCGGCGTTGACTGGGAGCAAGAAACATGTCAGCTTCACGGCGGACGGCAA
GGGGAAGACGGCGGCGAAGCCCGCCGGCGGGCAGAAGAAA---GGCGGCGGCCTGCTGGGGTGCATGGGGTCAGCGTGCG
GGTTGTCACGTGACGAGGTGGTGGAGCCGACCATGAACGCTAACCGTAAGGTTGTCTGTGCTTGAT--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----------S--------S----------S-SSSS---
---S---------------S-SSSSSSSSSS---------------------SSS---------S---------------
---------------------------------------------S----------S----------S--S---------
-----------------S-------------------------------------------S-----------------S
------------------------------S-----------------------------------------------S-
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----------------------------S--------------S---------------------------S--------
-----------------------------------------------------------------S--------------
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------------------------------------------------------------------S-------------
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---------------------------------------------------------S----------------------
-------S------------------------------------------------------------------------
---S----------------S----------------------S---------S--------------------------
-----------------------------S--------S--------------S-S-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_386
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----------------------------------------------AACTGATCTCAAAGGGCCCG--------------
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>reverse_1973
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----------------------------------------------------ACCAAACCAAGGGCTCCAAA--------
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