>input_sequence_77599
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------------------------------------------------------------------------------AT
GGATCAGGGCATAGGCACGTACACCTTCGACACAGCGAGTCGTGTATGGAGACAGGTTGGCAAATGGGTACTACCCTTCT
ATGGCAAAGCTGAGTATGTCCCTGAGCTCAAACTCTGGTTTGGCCTCTCAGAATGCAATGGCTC----------------
--------------------------TCCCAGGTTATGCGCCCTGGACCTCTCTGCCATGGACGCT---GAGCAGCCACC
AACACTGCAGAATACTTGGGATTATCTTGATCTGTTT---GAGGATAAGAAGACGGTGATATCTGAACACCATCTGGTTA
ACTTGGGCTCTGGCATGTTTTGCATTGCCACGCTCCTTAGGACTATTCTGCACACATTTAGCCCA---------------
------------GACTCCCCATGCTCTTCAGGTGAGGAAATTATGATGGATATGATGGATGGGGAGTTTATTTTCTTAAC
TGGTGTGGAAGTGGAGAGATGCTGCAACGAAGGTCAGGCTCCTTTCAAGATGATCAAGCACAAGTCTATATATTATGACT
TGAAACACCGTACCATAAAGTCCGTGCTCTAA------------------------------------------------
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>chr1D_1_TraesCS1D01G169300
CGAATAATCTCACTGCGCCTCCGCCGCCTTTCCTGGCACTCTTCGCTTATTCGCCGTCTCGAAAATAGCAGATCTAATCT
CCCGATTGTGCTCGCCGCTTCCTCACCCTCACCAGGCGCATCCGACTAGATCCTCCGCTGGTAAAGCAGCGTAAGGTATT
GTTCAGCGAAAGCCTCAGTCCTTGTTGGTTTGTAAAATTTGTGCGATTCAGAGCATTGACGGCTCACAACTGGATAGGGA
TAATTAGGAATTGGAGGCACGCAGGAGATTGCTGCTGGTTTTTTCTTTAATCTTAAATTATACAGTATTGGATATCTCAG
TCTCAATAATTGATACTCATTTTTTTAGTCAGACCAGTCGGAGAGATTCGATCAGTTGGACTTTGGAGAGGATGAATA--
-CTCGGTTTGTGAATTTGATAGTGCAGGACTTGAGCCGTCGCA--TGTATTCGCTGCATCGTCTGGATCCCTTGAAGTAC
CTCTTCTATCCGTCAACAGAAGCACGAAAAGCAGCACTA---GCAAAAACGGAG---AAGAACAAACCACCTATGCTAGA
GCGCTTGTCGGTTCTGCCTAAGCCGGAAATCAATTTTCATCCCATGTCTAGTTTAACACATAGTAGTATGAACAGGGATT
CGTTCTCTCTACTTGGAAAAGACA---GTATTGTTTTCAGTGACTCCTTTAGTAAGACAATACTCTACAACATTGAGCTG
GGAACTGTTGCAAGCATCCCTCGTATCAATTCATGCATGGTT---CCTTTTGGCATGAGCCTCCCCATGATCCAAGACAA
TCTTGTT---GACCGGACAGAAGATCA------AT---CTCTCTATGTTATGGACCTGTCACGTGACGCCAACATCAGCA
GCTGCTTCGAGGTCCTTAGATGCGACGATGGT------TGGGGCTGGCATACTTTGCCGGCGCCGCCATTCCTCTCTCAC
AATCCTTC---CTTCTGAAGAACCATCAACAGGTGTTGCTACACAGTGGTCGACAGCTCCACCATCTGCATATCATCTAT
GGATCAGGGCATAGGCACGTACACCTTCGACACAGCGAGTCGTGTATGGAGACAGGTTGGCAAATGGGTACTACCCTTCT
ATGGCAAAGCTGAGTATGTCCCTGAGCTCAAACTCTGGTTTGGCCTCTCAGAATGCAATGGCTC----------------
--------------------------TCCCAGGTTATGCGCCCTGGACCTCTCTGCCATGGACGCT---GAGCAGCCACC
AACACTGCAGAATACTTGGGATTATCTTGATCTGTTT---GAGGATAAGAAGACGGTGATATCTGAACACCATCTGGTTA
ACTTGGGCTCTGGCATGTTTTGCATTGCCACGCTCCTTAGGACTATTCTGCACACATTTAGCCCA---------------
------------GACTCCCCATGCTCTTCAGGTGAGGAAATTATGATGGATATGATGGATGGGGAGTTTATTTTCTTAAC
TGGTGTGGAAGTGGAGAGATGCTGCAACGAAGGTCAGGCTCCTTTCAAGATGATCAAGCACAAGTCTATATATTATGACT
TGAAACACCGTACCATAAAGTCCGTGCTCTAAGCAAGTTTTTGGGTCACATGGATGCTGCTCCTTGGCACGCTTCTCCCA
CATTCACTCTTGCCATGGCAAGTCCTTGGAATAACTCCGATGGACCTTAGTATTGTAGCGTGCTATAGATCATTTTGTGG
TCTTATTATTTTATTGGTTACTGCTTCAAAGGCTTGCCTAATTTATCTGTACGCTTTGTTTGTTTTAAGGAAATGTATGA
GACGCTCAGTGATTTTCATTTTTGCTGTTATTTTCTATCAGTCCAGTTAACTACTCCCTCCGTCCCACAATATAAGATGT
TTGCAATTGCAACGAGTTTCCGATGTCTTCCAGAATTATTTGTTTTAAGTGATAATCTTTTTTTACAAAGTTGAATGCAA
GTGACCATCTTACTTGTATAAAAAATTAATTCAAAGATATTCATATTATGAGTTCACCCCAATTAAGAAAACTAGCCAGC
ATCTGTGCACTGCACGAGCTTGTTAGCGTAATCGTTTTTTGTAGAGTAAAGCTAATGAATGTTACAAATACATGAGAAAT
TTACACTAGTTTGGTGAAGATTATTTTTGTGACTAAACTTGCATTTGATTTTCCTGTGTTTGTACTTCAGACAGCTTGTG
TTCATACATGATTGAACTGTTCCTTACTCTGAAATCACACATGATTAGTGAACTACTCCCTCTGTTCCTAAATATTTGTC
TTTTTAAAGATTTCAAATGGACTACCACATACGGATGTATATAGACATATTTTAAAGTGTAGATTCACTCATTTTACTCT
GTATGTAGTCATTTGTTGAAATTTCTAGAAAGACAAATATTTAGGAACGGAGAGAGTATATAAACTATTTTAACTCTAAT
TCAGTATTATCGTCATGATTATTTCATTATGTCTTTAATAAATTCAACCTTGCGAATGGATTGTAAGGCCGCCTGTTAGA
CTTATACCTCTTGTCATGGCAATCCCCCCCCTCCCCAAACACACACGCACGATGTGGGGGGTGCTATTGCGT
>chr5D_371
ATCAAG--------------------------------------------------------------------------
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-------------------------------------------------------TTGGAGTTTGGAGACGATGCGTTCC
CCTCGGTTTGTGAATCTGATAGTGGAAGACACCAGCCGCCGGATGTGTACTCGCTGCACCGGCTGGACGCCATGAAGCAC
CTCTTCTACCCGTCAGCAGAAGCACTCAAAGCAGCACAGGGTGCAAAAACG------AAGAAGAAAACATCAACGCTAGA
GCGTCTGTCGGTTCTGCCGGAGCCGGAGATCAGTTTTCACCCGATGGCCAGTTCAACACTTAGCAGTATGAACAGGAATT
CCTTCTCTCTGCTCGGAAGAGACGACCGCATTGTCTTCACCGACTCCTTCGGTTCAACAGCGCTCTACAGCACCGTCAAT
GGCACCTTCGCGAGCATCCCTCCCACCGCCGGCTCCCTCA-GGGCCCTTACTGCATGAACCTCCCCATGACCCAGGCCAG
TGATCCCGCCGACCGGGATGATGAAGACCGAGGATCGACTCTCTATGTCATGGACCTGTCAAGCGACGCCAGGATCCACG
ACCGCTTCCAGGTCCTCGCCTGCCACCAGGGCGACGGGTGGCGCTGGCATGCTCTGCCGGCGCCGCCATTCGTCTCTAGC
TACCCTTACAGCTACGGAAGCACGAC---------TTGCTACACAGTGGTCGACAGCTCCACCATCTGCATATCATCCAT
GAAAGGGGACTTGGGCACATACGCCTTCGACACGGCGAGGCACGTGTGGAGGCAGGTCGGCAAATGGGCGCTGCCCTGGT
GTGGCAAAGCTGAGTACGTCCCTGAGCTCAAGCTCTGGCTGGGCCTCTCGCTCCCGGCCGGCAGCCCCCCTTTGGGCCAC
TTGCTCCCGGTCTGCAGCCCCCACTTTCCCAGGTTATGCGCCTTGGACCTCTCCGCCATGGACGCCGCCGAGCAGCCACC
GACGCCGCAGGGTACTTGGGATTATCTTGACCTGCCCGAGGATGACAAGAGGAGGATGATAGCCGAGCTCCATCTGGTTA
ACTTGGGCTCTGGCATGTTCTGCGTCGCCACGGTCCTTAGG---------------------------------------
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>chr5B_382
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-------------------------------------------------------------TTTGGAAAGGATGAATCCC
CGTCGCTTTGTGAATCTTGTAGTGCATGACCGCAGCCGTTGCA--TCTACTCGCTGCACCGGCTGGACGCCATGAAGCAC
CTCTTCTACCCGTCAGCAGAAGCGCTCAAAGCAGCACAGGATGCAAGAACGACGACCAAGAAGAAACCATCAACGTTAGA
GCGCCTGTCGGTTCTGCCGAAGCCGGAGATCAATTTTCATCCCAAGTGCAGTGTAACAGGTAGTAGTACGATCAGGGATT
CCTTCTCTCTGCTCGGAAGAGACG---GCATCGTCTTCACCGACTCCTCCGGCACGACGGCACTCTACAGCACCGTCAAT
GGCACCGTCGCGACCATCCCTCGCACCGCCCGTTCACTCACGGGCCCTTACTGCATGAACCTCCCCATGACCCAGGCCAA
CGATCCCGCCGACCGGACTGAAGAAGAGCGAGGAT---CTCTCTATGTCATGGACCTGTCAGAGCACGTCAGTGTAGACG
ATCGCTTCCAGGTCCTCGCCTGCCACCACCACGACGGGTGGCATTGGCGTGCTCTGCCGGCGCCGCCATACGTCTCTGGC
TACCCTTACGACTTCGGAAGAACGAC---------TTGCTACACAGTGGTCGACAGCTCCACCATCTGCATGTCCTCCAA
GCAAGGGGGCTTCGGCACGTACGCCTTCGACACGGCGAGGAGCGTGTGGAGGCAGGTCGGCAAATGGGCCCTGCCCTGGT
GTGGCAAAGCTGAGTACGTCCCTGAGCTCAAGCTCTGGCTGGGCTTCTCGCTCCCCGTCGGCAGCCCCCCCGTGGGCACC
TTGATCTCGGCGTGCAGCCCCCCCTTTCCCAGGTTATGCGCCTTGGACCTCTCCGCCATGGACGGCGCGGAGCAGCCACC
GGAGCCGCAGGGTATTTGGGATTTTCTTGACCTGCCCGAGGATAACAAGAGGAGGATGATGAGCGAGCTCCATCTGGTTA
ACTTGGGCTCTGGCATGTTCTGCATCGCCACGCTACTTAGGAACTTGTTGCGCGTACCTGCACCATACTTGCCACTGACC
GACGATGAGGACGACTCGCCATGCATTTCAGATGAGGACAACATGATAGATCTCCTTTGCGACGAGATTGTTATCTTAAC
TGGAGTGAAGGTGGAGAGATGTTGCAACGACGGCGAGACTCCTCTTCAGATGATCAAGCACAAGTCTAGACGTTATGACT
TAAAACAATATACCATGAAGTCCGTGCTCTAACCCTTTTTTTGGG-----------------------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------S--
---------------S----------S---SSS----------------S--------S--S-----SS--S-----S--
--------S------S---------SS----------SS------------SS---------S------S-S-S------
----S-------------S--------S--------------------S----------S--------------------
-S--------S--S----S----S----S-----S----SS--------SS---S----SS--------S--SS-SSSSS
--S--S--S--S-----------S-S-SSSSSS-S-S-SSSS-------SSS------S-----------S---S-S---
-SS-SSS-----------S-----SS----------------------S------------S-S-------SS---SS-S
S-S-----S-------SSSS---S--S-S--S---------S--------S--S-----------------S-----SS-
S-S----S-------S-------S-SSSSSSSSSS------------------------------------------S--
-S-SSS----S-S---------S----------S-----S--S--S-----S-----S----------SS--S----SS-
S---------------S--------------S------S-S--------SSSSSS-SSS---SS----------------
------------------------------------------S----------S-----------S--------------
S--S-S----SS------------------S---SSS-----S--S----S--S-S-----S-S--S-S-----------
-------------------S-----S----------------SSS-SS---S-SS-SS-SSS------------------
-----------------S------SS-----S------S-SS-----S---S-SS-SSSS-SS---S--S--S-------
---S---S-S-----------S--------S--SS--S-----S-SS---------------------S-SS--------
-S-----SSS------S---------------S-SSS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_23
---ATAATCTCACTGCGCCTCCG---------------------------------------------------------
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>reverse_2091
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----------TGCACGAGCTTGTTAGCGTA--------------------------------------------------
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