>input_sequence_77598
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--------------------------------------------------------ATGATGCGTAAGAAACGTTCGGGC
GGCGGAATGGACGCGACGGTCGACGAGCTGAGCGCGGCGTATAAGGAGTTCGTGGCGGCTGCGGTGGCCGTGATGGAAGC
TCGCGAGCAGTCGGGCGGCCAGAAGACGGCAGCCACAGACGCGGCGCTTGAAGCCTTCAAGCAGCGATGGGAGCTCTTCC
GCGTCTCCTGCGACCACGCCGAGGAGCTCGTTGAGTCCATCCGCCAGCGCATCGGCTCCGAGTGTCTCGTCGACGAGGCC
ACGGGATCTTCCTCTTCCGCCTCCGCGCCCGCAAGCGTCGCGCTGGCTGCCCCCGGCATCAAGCCAATCAGCGCCGTCCG
CCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTTATCGAGCTTCAGCACGGCGCCGGAGGGCCCTCAGCTGCCGGAC
CTGGCGGTGGCGTCTCAACCCCGGCTGCCGGCGCCGGAGGGCAGCATGTGCACGGCGGGGTCGAATCGCGCTTCCCCGAG
GATGGCACCCAGTAG-----------------------------------------------------------------
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>chr1D_1_TraesCS1D01G133000
CATATGCACCTTGAGAGGATATAACCATGGATTTTGTACTTAGTTTGCCTAGGACTAGAAATGGCAAAGACTCAATATTT
GCTGTTGTGCATCGCTTCTCTTAAAGGACACATTTCATTCCATGCAACAAAGTAGCCGATGCTTCACATGTTGCAAATCT
CTTTTGTAGGGC-ATCTTACATCTTCATGGAGTGCTAAAAACAATTGTCTCCTACCATGACATCAAGTACTTCAGCTACT
TTTGGAAGACCCTATGCACCAAACTTGGAATCAAACTCATGTTCTCTCTGGTCTATCATCGCCAAACCGATGACCAAACC
GAGGTGGTCAACCA--------------TACTTCGCGTGCTCATTAGGAAGAACATCAAGGAGTCGGAGGAGCGCTTACC
TGTCGCTGAATTCACCTACAAT-GTGCAAGATACATGACTACGTACATGTCTCCATTTGATGTGGTGTACTGTTTCAACC
CTTTGTCCCCATTAGACATCCTCCCGCTTCCTCTCCAAGGTTTCGGAGTCGAATCCGATGTCCGTCATGCCGGAGAAGGC
CTGAGATCACCAAAATGGAGGTTGGGGGCGGAATGAAGTGGAGTGGCTAGGGTTTTGTCTAAGATGCGGATAGGGTGAAT
ATATGCAGGATCGGGATGGGCCAGCGTGGGCTAGATCCGACGTGGCGGATGCGCCCAGACACGTCCGGGCCTCCCCATAT
CCGTCTCAGATGTGGGCTGAGGATGTTTGTCAGCCCGGCCGTATAGGGCCGGTATGAGGGCTGCGGTCGAGTCAAGATTT
TGTGACCATTCACTGACTAGGCCGTCTGCCCAGATGTATAGATGTACCAGCTCATACTGTATGACATAATTTTTTTTCTC
ATATTTATGAGAACCCTAGACAGTAAAACAAAATGGACGGCCTGGATCTTCAAGCCTATGTGTACCTGGGTACCTGCGAG
TCCCCCGTGCTCAAATTGGGGGATTTTCGGGTTATAGCGTCAGCGGAGCGTGTCGGATGATGCGTAAGAAACGTTCGGGC
GGCGGAATGGACGCGACGGTCGACGAGCTGAGCGCGGCGTATAAGGAGTTCGTGGCGGCTGCGGTGGCCGTGATGGAAGC
TCGCGAGCAGTCGGGCGGCCAGAAGACGGCAGCCACAGACGCGGCGCTTGAAGCCTTCAAGCAGCGATGGGAGCTCTTCC
GCGTCTCCTGCGACCACGCCGAGGAGCTCGTTGAGTCCATCCGCCAGCGCATCGGCTCCGAGTGTCTCGTCGACGAGGCC
ACGGGATCTTCCTCTTCCGCCTCCGCGCCCGCAAGCGTCGCGCTGGCTGCCCCCGGCATCAAGCCAATCAGCGCCGTCCG
CCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTTATCGAGCTTCAGCACGGCGCCGGAGGGCCCTCAGCTGCCGGAC
CTGGCGGTGGCGTCTCAACCCCGGCTGCCGGCGCCGGAGGGCAGCATGTGCACGGCGGGGTCGAATCGCGCTTCCCCGAG
GATGGCACCCAGTAGGTACTGTTGTTGCTTATTAAGTAGTAGTATCATGTTTCAAAAAATAAGACAAGGAATTTATGTGA
TATGTGTGTTAACTGTTAAGTTTTGAGATTGGAAACATTACGGTTTGTTGTGCTCAGCATAGTACCTGATGCGTAAAGGT
GCGAAATATGGGGAAAGAACCACCAAATGATTGGCATTATTATTGCTAGCTTTTTTCCTTGGCTGGCTGATATTTTTTCC
GTGTCTTAGTGCGCGATGCTCGACATAGTTTGGTACAATTTTTGTAGGTACTCCCTCGGTACCTAAATATATGTCGCTGG
AGAAGTTGAACTACAGTTGCTTCAACGACATATATTCCGGTACAGAGGGAGTAGTTATCTGTCTTTTGTAACTTAATTGT
GCTAATCATCAGCTCACTGCCTTGCCTTACGTTTAAGTCTCTCTTCCTCACTTTTTGCGGGTCAGGGACAGTGTTCGGGC
CAGGTAGCTAATCAAATGTCCCAGAAAATAATGCACAATGTCACAGCCTACAAGATTGTCAGCTTATCTAAACCCTACTA
AGATAGGGCTATCGACCTATGATATCTCCGAATATTAGTTTTGGCTCATCTGGATTTCTTACTGCTCTTGCATATGATAT
GTCCTGAGTGCTTTCCAAGATTTCCAATTTTCTAGTGAATCATCTGTGTTTCTTGCGTTAAGAGATAATAATATCCACAA
GCAGCAACATACGCGATAGTTAACATTGAGAAATAATATGACATGGCTTATGATATTTGAACACCAAATATACTAGATGG
TCATTAGATGTTCCATTTCCATGTAATGTTCTCTATGTTACTCATCTATTTGGATATAGGCAAAACTTTTACTGGATGGC
GTGTCATTTTTTGTCTAACCAGTTGAATTTATGTAACCTATGTTGATCATATTCGCAGTGGACACTGTTCTAGCCATTTA
AGTGTTGTAAGTCAAGGTCTCTGAGCACTTACGCTGCCACCTACGCGTTAGCAGC
>chr1A_1
CATATCAACCATGGGAAGACATTAGCATGGACTTTGTACTTGGTTTGCCTAGAACTCGCAATGGGAAAGATTCCATATTT
GTTGTTGTGGACCGTTTCTCAAAAATGGCACATTTTATTCCTTGTCACAAGATAGACGATGCTTCACATGTTGCTAATCT
CTTTTGTAGGGAAATATTGCGTCTCCATGGTGTGCCAAAGGCAATTGTCTCGGACCGCAACGTCAAGTTCCTTAGCTACT
TTTGGAAGACCCTATGCACCAAGCTCGGAATCAAGCTACTCTTCTCCACGGCGTACCATCCTCAAACCGACGGCCAAACG
GAGGTGACAAACCGCACACTCTCCGCTC----------------TAAGAAGAACATCAAGGAGTGGGAGGAGTGCCTACC
TATCGCCGAGTTCGCCTACAACCGAGCAAGACACTTAACAACCGGCAAGTCGCCTTTCGAGGTCGTTTACGGATTCAACC
CATTGTCACCATCAGACGTTCTTCCTCTACCACTCCAAG-----------------------------------------
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>chr2A_1
CATATCAACCATGGGAAGACATTAGCATGGATTTTGTACTTGGATTGCCTAGGACTCGAAATGGAAAGGATTCAGTATTT
GTCGTTGTGGACCGTTTCTCCAAAATGGCACATTTCATTCCTTGCAACAAGATAGACGATGCTTCACATGTTGCCAATCT
CTTTTGTAGGGAAGTATTGCGTCTTCATGGAGTGCCAAGGACGATTGTCTCAGACCGCGACATCAAGTTCCTAAGCTACT
TTTGGAAGACCCTATGCACCAAGCTCGGAATCAAGCTACTATTCTCCATGGCTTACCATCCTCAAACCGATGACCAAACG
GAGGTGACCAACTGCACACTCTCCGTTCTACTTCGAGTACTCATCAAGAAGAACATCAAGGAGTGGGAGGAGTGTCTACC
TATCGCCGAGTTCGCCCACAACCAAGCAAGACACTCAACAACCAGCATGTCCCCCTTCGAGGTCGTCTACGAATTCAACC
CTTTGTCCCCATTGGACATTCTCCCTCTACCACTACAAG-----------------------------------------
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>chr5D_1
CATATGGACCTTGGGAAGATATAAGCATGGACTTTGTACTTGGTTTGCCTAGGACTAGAAATGGCAAAGACTCAATATTT
GTTGTTGTGGATCATTTTTCAAAGATGGCACATTTTATTCCATGCAACAAGATAGACGATGCATCACATATTGTAATTTT
ATTTTGTATGGAAATTACTCATCTTCATTGAGTACCCAAGAGAATTGTCTCCGACCGCGATGTCAAGTTTTTGAGATACT
TTTGGAAGAC--TATGCACCGAGCTCGGAATCAAGCTCATGTTTTCTTTAGTCTATCACCCACATACGGATGGCCAAACC
GAGGTGGTGAACCGCACACTCTCCATGCTTCTTCGAGTACTTATCAAGAAAAACATCAAAGAATGAGAGGAGTGCCTACC
CGTCGCTGAGTACACCTACAATCGGGCAAGGCATTTGACCACTAGCAAGTCTCCTTTTGAGGTGGTCTAGGGCTTCAACC
AGTTGTCCCCATTGGACATCCTCC--------------------------------------------------------
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>chr4B_8
-------ACCTTGGGAAGACATTATCATGGATTTTGTACTTGGTTTGCCTAGAACTCAAAATGGCAAGGACTCCGTGTTT
GTTGTTGTGGACCGATTTTCTAAGATGGCACATTTCATCCCTTGCAACAAGATAGACGATGCTTCACATGTTGCAAATCT
CTTTTGTAGGGAAATCTTGCGTCTCCATGGAGTACCAAAGACAATCGTCTCCGACCACGACGTCAAGTTCTTGAGTTACT
TTTGGAAGACCCTATGCACCAAGCTCGGAATCAAGCTCTTGTTCTCATCCGCATACCAACCTCAAACCGACGGCCAAACG
GAGGTGACGAACTGTACACTATCCACTCTACTTCGCGTGTTGATCAAGAAGAACATCAAGGAGTGGGAAGAGTGTCTACC
CATTGCCGAGTACCCCTACAACTGTGGAAGACATTCGACGACCGGCAAGTCCCCCTTCGAGGTCGTCTACGGCTTCAACC
CGTTGTCCCCATTCGACATTCTACCTCTTCCTCTACAAG-----------------------------------------
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>chr4B_8
-------ACCTTGGGAAGACATTAGCATGGATTTTGTACTTGGTTTGCCTAGAACTCAAAATGGCAAGGATTCCGTGTTT
GTTGTTGTGGACCGATTTTCTAAGATGGCACAATTCATCCCTTGCAACAAGATAGACGATGCTTCACATGTTGCAAATCT
CTTTTGTAGGGAAATCTTGCGTCTCCATGGAGTACCAAAGACAATTGTCTCCGACCACGACGTCAAGTTCTTGAGTTACT
TTTGGAAGACCCTATGCACCAAGCTCGGAATCAAGCTCTTGTTCTCATCCGCATACCACCCTCAAACCGACGGCCAAACG
GAGGTGACGAACCATGCACTATCCACTCTACTCCGCGTGTTGATCAAGAAGAACATCAAGGAGTGGGAGGAGTGTCTACC
CATCGCCGAGTACGCCTACAACCGTGCAAGACATTCGATGACCGGCAAGTCCCCCTTAGAGGTCGTCTACGACTTCAACC
CGTTGTCCCCATTGGACATTATACCTCTTCCTCT----------------------------------------------
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>chr5B_8
-------ACCTTGGGAAGACATTAGCATGGATTTTGTACTTGGTTTGCCTAGAACTAAAAATGGCAAAGATTCCGTGTTT
GTTGTTGTGGACCGATTTTCTAAGATGGCACATTTCATCCCTTGCAACAAGATAGACGATGCTTCACATGTTGCAAATCT
CTTTTGTAGGGAAATCTTGCGTCTCCATGGAGTACCAAAGACAATCGTCTCCGACCGCGACGTCAAGTTCTTGAGTTACT
TTTGGAAGACCCTATGCGCCAAGCTCGGAATCAAGCTCTTGTTCTCATCCGCATACCACCCTCAAACCGACGGCCAAACG
GAGGTGACGAACCATACACTCTCCACTCTACTTCGCGTGTTGATCAAGAAGAACATCAAGGAGTGGGAGGAGTGTCTACC
CATCGCCGAGTACGCCTACAACCGTGCAAGACATTCCACAACCGGCAAGTCCCCGTTCGAGGTCGTCTACGGCTTCAACC
CATTGTCCCCATTGGACATTCTACCTCTTCCTCTACAAG-----------------------------------------
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>chr1A_200
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----------------------------------------ACAATTGTCTCCGACCGTGACGTCAAGTACTTGAGCTACT
TTTGGAAGACCCTATGCATCAAACTTAGAATCAAACTCATGTTCTCTTCGGTCTATCATCGTCAAACCGATGGCCAAACC
AAGGTGGTCAACCGTACGCTATCGACACTTGTTCGCGTGCTAATTAGGAAGAACATCAAGGAGTCAGAGGAGCGTTTACC
TGTCGCTGAATTCACCTACAAT-GTGCAAGATACACGACTACGTACATGTCTCCATTTGATATGGTGTACTGTTTCAACC
CTTTGTCCCCATTAGACATCCTCCCGCTTCCTCTCCAAGGTTTCGGAGTCGGATCCGATGTCCGTCATGCCGGAGAAGGC
CTGAGATCATCGAAATGGTGGTTGGGGGCGAAATGAAGTGGAGTGTTTAGGGTTTTGTCTAAGATGCGGATAGGATGAAT
ATATGCAGGATCGGAATGGGCCAGGGTGGGCTGAATCCGACGTGGAAGATGCATGCAGGCACGTCCGGGCCTCCCCATAT
CCGTCTCAGATGTGGGCTGAGAATGCTTGTCAGCCCGGCCGTATAGGGCCGGTATGAGGGGTGTGGCCGAGTCAAGATTT
TGTGACCGCTCAGTGGCCGTTTGTGTAGAC-----GTATAGATGTACCAGCTCATACTGTATGACATAATTTTTTTCCTC
ATATTTATGAGAACCCTAGACAGCAAAACAAAATGGACGACCTGGATCTTCAAGCCTATGTGTACCTCGGTGCCTGCGAG
TCGACCGTGCTCAAATTGGGGGATTTTCGGGTTATAGCGTCAGCGGAGCGTGTCGGATGATGCGTAAGAAACTTTCGGGC
GGCGGAATGGACGCGACGGTGGACGAGCTGAGCGCGGCGTATAAGGAGTTCGTGGCGGCTGCGGTGGCCGTGATGGAAGC
TCGCGAGCAGTCGGGCGGCCAGAAGATGGCAGCCACGGACGCGGCGCTTGAAGCCTTCAAGCAGCGATGGGAGCTCTTCC
GCGTCTCCTGCGACCACGCCGAGGAGCTCGTTGAGTCCATCCGCCAGCGCATCGGCTCCGAGTGTCTCGTCGACGAGGCC
ACGGGATCTTCCTCTTCCGCCTCCACGCCCGCAAGCGTCGCGCTGGCTGCCCCCGGCATCAAGCCAATCAGCGCCGTCCG
CCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTTATCGAGCTTCAGCACGGCGTCGGAGGGCCCTCAGCTGCCGGAC
CTGGCGGTGGCGTCTCAACCCCGGCTGCCGGCGCCGGAGGGCAGCATGTGCACGGCGGGGTCGAATCGCGCTTCCCCGAG
GATGGCACCCAGTAGGTACTGTTGTTGCTTATTAACTAGTAGTATCATGTTTCAAAAAATAAGACAAGGAATTTATG---
-------------TGTTAAGTTTTGAGATTGGAAACATTACAGTTTGTTGTGCTCAGCATAGTACCTGATGCGTAAAGGT
GCGAAATATGGGGAAAGAACCACCAAATGATTGGCATTATTGTTGCTAGCTTGTTTCCTTGGCTGGCTGATATTTTTTCC
GTGTCTTAGTGCGCGATGCTCAACATAGTTTGGTACAATGTTTGTAGGTACTCCCTCGGTACCTAAATATATGTCGCTGG
AGAAGTTGAACTACAGTTGCTTCAATGACATATATTTCGGTACAGAGGGAGTAGTTATTTGTCTTTTGTAACTTAATTGT
GCTAATCATCAGCTCACTGCCTTGCCTTACGTTTAAGTCTCTCATCCTCACTTTTTGCGGGTCAGGGACAGTGTTCGGGC
CAGGTAGCTAATCAAATGTCCCAGAAATTAATGCACAATGTCACAGCCTACAAGATTGTCAGCCTATCTAAACCCTACTA
AGATAGGGCTATCGACCTATGATATCTCCGAATATTAGTTTTGGCTCATCTGGATTTCTTACTGCTCTTGCATATGATAT
GTCCCGAGTGCTTTCCAAGATTTCCAATTTTCTAGTGAATCATCTGTGTTTCTTGTGTTAAGAGATAATAAGATCCACAA
GCAGCAACATACGCGATATTTAACATTGAGAAATAATATGACATGGCTTATGATATTTCAACACCAAATATACTAGATGG
TCATTAGATGTTTCATTTCCATGTAATGTTCTCTATGTTACTCATCTATTTGGATATAGGCAAAACTTTTACTGGATGGC
GTGTCATTTTTTGTCTAACCAGTTGAATTTATGTAACCTATGTTGATCATATTCGCTCTCGACACTGTTCTAGCCGTTTA
AGTGTTGTAAGTCAAGGTCTCTGAGCACTTACTCTGCCACCTACGCGTTAGCAGC
>SNPs
------S------S--S-------S----------------S--------------------------------------
-S-------S----S------S---S-S----------------------SS---S------------------------
-----------S------S----------------S---S------------S-------------------S-------
-----------------------------------------------S-------------S------------------
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---------------------------------------------------S----------------------------
---------S-S------S-----------S--------------SS---------------------------S-----
--------------S---------S-------SS-----------SS-----SSS---S---------------------
---------------------S---S----------------------------------S--S--S-------------
-------SS---S--S-SSSSSSSSSS-S-SSSSS-----------------------------------------S---
-----------------------S---------------S---------------------------S---S--------
--SS--------------------------------------------------------------------S-------
--------------------S-----------------------------------------------------------
--------------------------S---------S-------------------------------------------
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------------------------S-------------------------------------------------------
--------------------------------------------------------S-----------------------
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-----------------------------------S-----------------------------------------SSS
SSSSSSSSSSSSS----------------------------S--------------------------------------
-----------------------------------------S----------S---------------------------
---------------------S-----------------S----------------------------------------
-------------------------S----------S---------------------S---------------------
-------------------------------------------S------------------------------------
---------------------------S-----------------------------------S----------------
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----S--------------------------------------------------S---------------S--------
------------------S---------------------------------------S---------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------SS-S---------------S----
--------------------------------S----------------------
>forward_570
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----------------------------------------------------------------------CGGAGAAGGC
CTGAGATCAC----------------------------------------------------------------------
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>reverse_2457
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--------------------------------------------------------AGTGGACACTGTTCTAGCCA----
-------------------------------------------------------
