>input_sequence_77593
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-----------------CTCACAACAC-AA-TTCACCACCGCTCCTCAACCTC-----CTCCGTCCGCTCGCAGCTCGAA
CCAAGGAGAGACC-GTCAGCCATGTCCGGCCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCGCTCGGAGGGGCGGCGTGAAGCGCA
TCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTCTTCCTCGCCACCCCACTGCAG----ATCCCGAAAGTTTGATGATACCGCGACTTGTGTAGTTC
GCTAGTTCCTCTGTAGTTCGCTATTTCC-TCTGTATTTCGTACTGAATCGTGCAGCAAAGTTATTCGCA-----------
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------------------------------------------------------------------------
>chr1A_1_TraesCS1A01G295400
TTTGCATGAAATTCGTTCGGTTTGTTTCAAATCCTATTGGATGGCCGGCTCTCGCATCATTGTCTGACGTGTCCGCGAAC
AAATACCATTTTCG--TTAGGGTTTTCCATTGGAGTTGCCCTTAGACTTACCAAATAAAATTGGTGGGTATTACCCG-TC
CCCGTCCGCTCCACCTCACAATTTTCATAATTTTTTATCTTGATCTAAAGATTCACATGAAATAAATTTTTCAATGCCAA
ATTTTACTTTTCATTTTCTTCAAATTTTCTTTTGTCCCTAGAACTAGGTTGCCTAGTTAAGAAAACTTTGTGGAATTACC
TTGCTCAGAAAAACAATGTTTTCTCAAAAACACACACACACACACACACACACANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
ACAATATTTTGGTAAAATCGACGGGGACCGGACAGACTCCGTGCCGTTCC-TAGTTCGCGCCATTGTGTGCACCAGCGCG
AAAACATCGCGCCCCGCCCACAGCCCAAAACTTTGGCGCCGGCG-------------GCCA-------------------
--TTCCCGCAATCGGCGCCT-------CCCGCCAGGTCATCGATCCGCGGCATCCGT-CCCCCGGATCGCAATCTCAACC
GTGCATTCCATCTGCATCGAACGGCAGCAACGCGCC---------TCCTCCCACCTCTCGTCCACCTT-AAAATCCCCTC
CCCACATC-CGGCAAATCTCACAACAC-AA-TTCACCACCGCTCCTCAACCTC-----CTCCGTCCGCTCGCAGCTCGAA
CCAAGGAGAGACC-GTCAGCCATGTCCGGCCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCGCTCGGAGGGGCGGCGTGAAGCGCA
TCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACGGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTCTTCCTCGCCACCCCACTGCAG----ATCCCGAAAGTTTGATGATACCGCGACTTGTGTAGTTC
GCTAGTTCCTCTGTAGTTCGCTATTTCC-TCTGTATTTCGTACTGAATCGTGCAGCAAAGTTATTCGCAGT--TTGTTAG
AAATCAAACATGTCTC--TGAAATACCTTGTCTCTGACTTTGTTCTGCTGCATTTCTGTTAC-GTAA-AATTGTACTATC
TTCTGTGATGCAAAATTGTGTGTGCTTGGGAGTTGGATTGTTTTGCTATTCTTTTACCAGGAGCCCCTGACGGATTGCAT
TTGCTTGCGGAATAG-TTAGTGCATGGCCAAATCAGGAACATCAGTTGCCCCGTTTCTGCTATTT--TATCTGATGCATT
TGTACAAGGCATCATTTATGATTGTTC----TGTGTTGCAACAATGTGTTTAATTAAGGTTGGGATTAGTCTGTATTTCA
TACAT----CGATTTCTAGATTGATTTGCTATGCCACTTGCTCTGTGCAAATCATCATGTGTTTCCTGTTAATCAAATGT
CACT-TTGCTCTATTTCTGCTGTTTTTTT-----------GGTTACTGCAGTAATACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCATCTG
ATGCATCAAACATTTTGGCCGTGGCAAAAAAAAAGGGCAGCCCCAATGCATGTAGCTCCCGCTTGCGCAAGGTCTAGGTA
AGGGTCCGACCACTTTGGGTCTATTGTATGCAGCCTTTCCCTACATTTCTGCAAGAGGCTGTTTCCAGGACTTGAACCCG
TGACCTCATGGTCACAAGGCAGCAGCTTTACCACTACGCCAAGGCTCCCCTTCACATTTTGGCCGTGGCAGCAACAA---
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------CTTAATCCT
TCAGCCTATATTAACTAGCTTATCAACATAATTCTCCATCTTCATTTTCCTAATATCATATGATGCTCTAGATTAGGGGA
GTTTAGTGACAGAATAATTTATCTTAAAACCTGGGAAGATCAGTTCTTACTTGATGCGTTTACTGTATTA--GCAGGAAT
GAAAAACAGTTAG--AGCAATGACCCGTGAATCCTAGAATCCTACAGAAGCGAACACCAGCGAGCAATGAAAAATGATAA
TAGTAGTGATACA-TTGCATTGGGTCAAGTTTCTTGTAGATTATATTTATTTAACAAGAACAATTCAGATGA
>chr1A_1
TTTACATGAAATTCGTTCGGTTTGTTTCGAATCCGGTTGGATGGCCGGCTCCCGGATCACTGTCCGACGTGTCCACGAAC
AAATACCGTTTCTGTTTTAGGGTTTTGCATCGGAGTTGCCCTTAGACTTACCAAACAAAATTGGTGGGTACTACGCGT--
CCCATCCGCTCCACCTCACAAATTTCATCATTTTTTCTCTCGATCTAAAGATTCACATGAAATAATTTTTTCAATGCCAA
TTTTTGCTTTTCATTTTCTTCAAATTTTCTTTCGTCCCTAGAACTAGGTTGCCTAGTTACGAAAACTTTATGGAATTACC
TTGCTCAGAAAAACAATGTTTTTAATTTCAAAAAAAGAAACAATGTTTTCTCCACCAAAAGAGAAACAA-----------
--------------------------------------------------------------------------------
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---------------------------------------------------TAGTTCGCGCCATTGCGTACACCAGCGCG
AAAACATCGCGCCCCGCCCACAGCCCAAAACTTTGGCGCCGGCA-------------GCCACTCCTCTGACCCAGTCCGC
CACTCCAGCAACCGGCGCCT-------CCCGCCAGGTCATCGATCCGCGGCGTCTCT-CCCCCGGATCGCAATCTCAACC
GTGCATTCCATCTGCATCGAACGGCAGCCACACGCC---------TCCTCCCACCTCTCGCCCACCATAAAAATCCCCTC
CCCACCTC-CGGCAAATC--ACAACAC-AA-TTCACAACCGCTCCTCGACCTC-----CTCCATCCGCCCGCAGCTCGAG
CCAAGAAGAGATC-GTCAGCCATGTCTGGCCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCTAAGCGCCACAG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGCCTGGCTCGGAGGGGCGGCGTGAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTCTTCCTCGCCCCCC--CTGCAG----ATCCCAAAAGTTGGATGACACCGCGACTTGTGTAGTTC
T-------------------CTGTTTGC-TCTGTAGTTCGAACTGTATCGTGGAACAAAGTGGTTCGCATGTGTTGCTGG
AAATCAAACCTGTCCCAGTGAAATACCGTGTCTCTGATTTTGTCCTGCTGCATCTCTGTTTATGTGA-AACTGTTATTTC
TTCTGTGATGCGAAATTGTGTGTGCTTGCGAGTTGGATTGTTTTGCCATTCTTTTTCCTGGAGACCCTGCCAGATCGTTC
TTGCTTGCTGAAAAATTT-GTGTATGGCTGAATCAGGATCATCATTTGC-------------------------------
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------------------------------------------------------------------------
>chr6B_24
-----------------------GTTTAAAATCTGGTTGGATGGCCGGCTTCCGAATCACTGTCCGGTGTGTCCGCGAAC
AAATTCCGTGTCTATTTTAGGGTTATGCATTGGAGTTGCCCTTAGACTTACCAAACAAAATTGACAGGTGCTACGCGTTC
CCCATCCTCTTCACCTCACAATTTTCATCATTTTTCCTCTCAATTTAAAGATTCCCATCAAATAAAATTTTCAATGCCAA
TTT--ACTTTTCAGTTTCG---AATTTTCTTTTGTCCCTAGAACTAGGTTGCCTAGTTAAGAAAACTTTGTGGAATTACC
TTGCTCAGAAAAACAATGTTTTCTCCGCAAAAGAATAATAA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTAAATCGATGGGAACGGGATAGACTTTTTTTTTGTTTTTTGACGGGAGGGAACGGGACACCAGCGCG
AAAACATCGCGCCCCGCCCACAGCCCCAAACTTTGGCGCCGGCG-------------GCCACTCCTCTGACCCAGCCCGC
CACTCCAGCGACCGGCGCCT-------CGCGCCAGGTCATCGATCCGCGGCGTCTTTCCCCCCGGATCGCAATCTCAACC
GTGCATTCCATCTGCATCGAACGGCAGCAACACGCC---------TCCTCCCACCTCTCGCCCACCTT-AAAATCCCCTC
CCCACCTC-CG-CAAATC--GCACAAC-CA-ACCACCACTGCTCCTCCTCCAATCCCAC---ATTCGGTCGCAGCTCGAA
CCAAGGAGGGATC-GTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGGCACAG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTGGCGAGGAGGGGCGGCGTGAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGACGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTTTTCCTCGCCCCCCTCCCCTGCAGATATCCCAAAAGCTTGATGGAACCGCGGCTTGTTTAGCTC
T-------------------CTATTTGC-TCTGTAGTTCGAACTGAATCGTGGAACAAAGTGCTTCGCATATGTTGCTGG
AAATCAAACTTGTCTCAGTGAAATACCGTGTCTCTGATTTTGTTCTGCTGCATCTCTGTTAATGTAA-AATTGT----TC
TTCTGTGATGCAAAGTTGCGTGCGCTTGGGAGTTTGATTGTTTTGCCATTCTTTTTTA-------CCTGATGGATCGTAC
TTGCTTGCCGAACAA-TT-GTGTATGGCCGAATCAGGAACATCATTTGCTCCGTTTCTGGTATTTTAGATCTGATGCATT
TGTACCGGGCACCATTTATGATAACTCTTATTATGTTGCAACAATGTGATTCTTGTGATTCTTGT---------------
---------------------------------------------TGCAAATCATCATGTGATTCTTGTTAATCAGAAGT
GTCACTTGCTCTATTTCTGCTGTTTTCTT--TTTTTTCGCTGTTACTGCAGTAATACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCATCTG
ATGCATCATACATTTTGGCA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTGGCA----------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr1B_749
--------------------------------------------------------------------------------
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-------------------------------ACAGACTTCGTGCCATTCCTTAGTTGGCGCCACTGCCTACACCAGCACG
AAAACATCGCGCCC-----ACAGCCCAAAACTTTGGAGCCGGCGGGTGACCCAGCCCGCCA-------------------
--CTCCAGCAATCGGTGCCTGTGCCTCCCCGCCAGGTCATCGATCCGCGGCATCCCT-CCCGCGGATCGCGATCTCAACC
GTGCACTGCATCTGCATCTGACGGCACAAACACGCCTCCTTTCCGTCCTCCCACCTCTTGCCCACCTT-AAAATCCCCTC
CCCACCTC-CGGCAAATC--ACAACAC-AA-TTCCCCACCGCTCCTCGACCCC-----C---ATCCTCTCGCGGCTCGAA
CCAAGAAGAGATC-TTCAGCCATGTCGGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACAG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGGCGCCTGGCGAGGAGGGGCGGCGTGAAGCGCA
TCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACTGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGTCGCACCCTCTACGG
CTTCGGCGGCTAGGCTCTTCCTTGCCCCCT---TGCAG----ATCCCAAAAGTTTGATGATACCGCGACTTGTGTAGTTC
TCTACTTCCTCTGTAGTTCGCTATTTCC-TCTGTATTTCGAACTGAATCGTGGAGCAAACCTATTCGCAGT--TTGTTAG
AATTCAAACTTGTCTAAGTGAGATACCGTGCCTCTGATTTTGTCCTGCTGCATCTCTGTTAATGTGA-AATTGTTCTGTC
TTCTGTGATGCAAAATTGCGTGCGCCTGGGAGTTGGATTGTTTTGCCATTCTTTTACCTGGAGACCCTGACGGATCGTAC
TTGCTTGCCTAACAA-TC-GTGTATGTTCGAATCAGGAACATCATTTGCTTCGTTTCTGCTAGTT--GATCTGATGCATT
TGCACCGGGCACCATTTATGATTCT-------ATGTTGCAGCAA--TGTGTAATTGGGATTGGGATTAGCCTG----CAT
TTCATA-------------------------------------------------------------------CAGAAGT
GTCACTTGCTCTATTTCTGCTGTTTTTCT--CTA------TGTTACTGCAATAATACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCATCTG
TTGCATCATACATTTTGGCA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTGGCAGCAACAACTT
GGCCCTGTTTGATAGCAAAGTATTATAAAAACTAAAGTATTGAAAACTATAGTAATTTAGTCAGTAGGTACACAATACTA
CAGTTTTAACATAACAGAGTATTTTGAAGTATTCATGATACAGAGGACATGTTTGGTACAGTGATGTAACATTAGCTGAC
TAGCTGTTAGCACTACTGCATACAAGCATGTTTTCTAGATGTTAGCTGGCTAGCCATTGCATCCAGCAACAGACCAGCGT
AAGAGCAGCGCTGCTCTACCTGGCTGGCTGTATCATGCATAAGAACGCAGAGATCCATGCATCCAGGAAGCTGCGATCTA
TTGCAGCCCCATGCAGAAACATGCCATGGCCTCTAGGTAGCAGCCGCGAGCCATGCGACGCCTACTAAAATTTTGCCGCT
GAGGGATAAAACTCTAGAAACGACATGGCAGTGGCAACGATGGCATGGAAGCGAAGGGGAATTGATGCGAATAGTGAGGG
AAAAGATAACCATGCTTCCCTCTTTCTTTTACAGCTGCTCTGTTTTAAAAAAAGAGGTCCAGAGGTCTTTTTTTTATGCA
GAGAAAAAACCTTGGTTTGGTAAATACCGCAGTATTAAAATCACAGTTTTTAGTGGCAACCAAACAGCTTGTTGTAAAAA
AAACTATGGTAATCTAAAAAAACTGTAGTATTCTCATAATACTTAGAAAATACTCTACTATCAAACAGGGCCTTAATCCT
TCAGTTTATATTAACTAGCTTATCAACATAATTCTCCATCTTCATTTTGCTAATATCATATGATGCCCTAGATTAGGGGA
GTTTAGTGACAGAATAATTTATCTTGAAACCTGGGAAGATCAGTTTTTACTTGATGTGTTTACTGTATTA--GCACGAAA
GGAAAACAGTTAGGGTGCAATGACCCGTGAAT-CTAGAATACCACAGAAGTGAACGCCAGCGAGCAATGAAAAATGAGAA
AAGTAGTGGTGCATTTGCGTTGGGTCAAGTTTCTTGCAGATTATCTTTATTTCTCAAGAACAATTCAGAT--
>chr1A_789
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------------------------------------------------------------------------CCAGCACG
AAAACATCGCGCCC-----ACAGCCCAAAACTTTGGAGCCGGCGGGCGCACCTCTGAC----------------------
----CCAGCGATGGGAGCCT-------CCCGCCACGTGATCGATCCGCGGCGTCTCT-TCCCCGGATCGCAATCTCAATC
ATGCATTCCATCTGCATCGAACGGCAGCAGCACGCC---------TCCTCCCACCTCTCGCCTACCTTAAAAATCCCCTC
CCCACCTC-CGGCAAACC--ACAAAAC-AAATTCACCACCGCTCCTCGACCTC-----C---ATCCGCTCGCCGCTCGAA
CCAAGGAGAGAGC-GTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCAGGCGCCTGGCTCGCCGGGGCGGCGTGAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTGTC-----CCCCCC---TGCAG----ATCCCAAAAGCTTGATAGAACAGCGGCTTGTT------
-------------TAGTTCTCTATTTGCTCCTGTAGTTCGAACTGAATCGTGGAACAAAGCTATTCGCATGTGTTGCTGG
AAATGGAGCTTGTCTCGA-GAAACAACGTGTCTCTGATTTTGTTCTGCTGCATCTCTGTTAATGTATAGTTTGTTCTTTC
TCCTGCGATGTGAAATTGTGTGCGCTTGGGAGTTGGATTGCTTTGCCATTCTTTTACCAGGACACCCTGACGGATCGTAC
TTGCTTGCCGAACAA-TT-GTGTATGGCCGAATCACCAACATCGTTTGATCCGTTTCTGCTATTT--GATCTGACGCATT
TGTACCGGGCACCATTTATGATCCTTG----TATGTTGCAACAATGTGTGTAATTGAGATTGGGATTAGTCTG----CAT
TTCAT----CGTTTTCTAGATTGATTTGCCATGCCACTTGCTCGGTGCAAATCATCATGTGATTCTTGTTAATCAGAAGT
GTCACTTGCTCAATCTCTGCTGTTCTTTT--TTA------TGTTAGTGCAGTAATACT----------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TCATCTG
TTGCATCATACATTTTGGCA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTGGCAGCAACAA---
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------CTTAATCCT
TCAGTTTATATTAACTAGCTTATCAACATAATTCTCCATCTTCATTTTCCTAATATCATATGATGCCCTAGATTAGGGGA
GTTTAGTTACAGAATAATTAGAAAGATC--------AGATCAGTTCTTACTTCATGTGTTTACTGTATTATAGCAGGAAT
GAAAACCAGTTAGGGTGTGATGACCCGTCAATCCTAGAATCCTACAGAAGTGAACACCAGCGAGCAATGAAAAATGACAA
TAGTAGTGTTGCATT-GCATTGGGTCAAGTTTCTTGTAGATTATCTTCATTCCTCAAGAACAGTTCAGATGA
>chr1A_841
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------GCCA-------------------
--CTCCAGCAATCGGTGCCT-------CCCGCCAGGTCATCAATCCGCGGCATCTCT-CCCCCGGATCGCGATCTCAACC
GTACACTCCATCCACATCGAACGGCAGGAAAACGCC---------TCCTCCCACCTCTCGCCCCCCTT-AAAATCCCCTT
CCCCCTCC-CGGCAAATC--GCACAAAACA----ACCACCACCGCTCCTCCAATCCCAC---ATTCGCTCGCAGCTCGAA
CCAAGGAGAGACC-GTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGAGGCTCGCTCGGAGGGGCGGCGTCAAGCGCA
TCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCATGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTCGTCCTC---------------------------------------------------------
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------------------------------------------------------------------------
>chr1B_841
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---------------------------------------------------------GCCA-------------------
--CTCCAGGAATCGGCGCCT-------CCCGCCAGATCATCGATCCGCGGCACCTCT-CCCCCGGATCCCCATCTTGACC
GTCCACTGTATCCGCATCGAACGGCAGGAACACGCC---------TCCTCCCACCTCTCGTCCCCGTT-AAAATCCCCAC
CCC-CTTC-CTGCAAATC--ACCACAG-CA-ATCACCACCGCTCCTCCACCTC-----C---ATCCACTCGCAGCTCGAA
CCAAGGCTAGTTC-GTCAGCCATGTCCGGCCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGGCACAG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTCGCCAGGCGGGGCGGCGTGAAGCGCA
TCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTTCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTACGG
CTTCGGCGGCTAGGCTCGTCCTCGCCCCCC--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr1D_841
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCCA-------------------
--CTCCAGCAATCGGCTCCT-------CTCGCCACGTCAGCGATCCGCGGCATCTCT-CTCGCGGATCCTCATCTTGACC
GTCCACTGCATCCGCATCGAACGGCAGGGACACGCC---------TCCTCCCACCTCTCGTCCCCGTT-AAAATCCCCTT
CCCCCTTC-CGGCAAATC--GCACAAACAA----ACCACCACCGCTCCTCCAATCCCAC---ATTCGCTCCAAGCTCGAA
CAAAGGAGAGACC-GTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACAG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGCCTGGCTCGGAGGGGCGGTGTCAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGACAGGGCCGCACCCTCTACGG
CTTCGGCGGCTAGGCTCGTCCTCGCCTCCC--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr1B_859
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GCCT-------CCCGCCACGTTATCGGTCCGCGGCGTCTCT-TCCCCGGCTCGCAATCTCAACC
GTGCATTCCATCTGCATCGAACGGCAGCAGCACGCC---------TCCTCCCACCT-----------T-AAAATCCCCTC
CCCACCTC-CGGCAAATC--ACAAAAC-AA-TTCACCACCGCTCCTCGACCTC-----T---ATCCGCTCGCAGCTCGAA
CCAAGGAGAGACC-GTCAGCCATGTCCGGGCGCGGCAAGGGAGGCAAGGGACTCGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCTCGCCGTGGAGGCGTGAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACCGTCACCGCAATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTACGG
CTTCGGCGGCTAGGCTCTTCCTCGCCCCCC---TGCAG----ATCCCAAAAGCTTGGTAGAACAGCGACTTGTG------
-------------TAGTTCTCTATTTGC-CCTGTAGTTCGAACTGAGTCGTGGAACAAAGTTATTCGCACGTGTTGCTGG
AAATGGAACTTGTCCCAGTGAAATAACGTGTCTCTGATTCTGTTCTGCTGCGCCTCTGTTAATGTAT-GTTTGTTCTTTC
TCCTGCGATGCAAAATTGTGTGCGCTTGGGAGTTGGATTGTTTTGCCATTCTCTTACCAGGAGACCCTGACGGATCGTAC
TTGCTTGCCGAACAA-TT-GTGTATGGCCGAATCACCAACATCATTTGATCCGTTCCTGCTATTT--GATCTGATGCATT
TGTACCGGGCACCATTTATGATCCTTC----TATGTTGCAACAATGTGTGTAATTGAGATTGGGATTAGTCTG----CAT
TTCATGCATCGCTTTCTAGATTGA-TTGCCATGCCACTTGCTCTGTGCAAATCATCATGTGATTCTTGTTAATCAGAAGT
GTCACTTGCTCAATTTCTGCTGTTTTTTTAGTTA------TGTTAGTGCAGTAATACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCATCTG
TTGCATCATACATTTTGGCA------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTGGCAGCAACAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CTTAATCCT
TCAGTTTATATTAACTAGCTTATCAACATAATTCTCCATCTTCATTTTCCTAATATCATATGATGCCCTAGATTAGGGGA
GTTTTT-----------TTAGAAAGATC--------AGATCAGTTCTTTCTTGATGTGTTTACTGTATTATAGCAGGAAT
GAAAAACAGTTAGGGTGCGATGACCCGTGAATCCTAGAATCCTACAGAAGTGAACACCAGCGAGTAATGAAAAATGACAA
TAGTAATGATGCATT-GTGTTGGGTCAAGTTTCTTGTAGATTATCTTCAGTTCTCAAGAACAGTTCAGATGA
>chr1D_859
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GCCT-------CCCGCCACGTGATCGATCCGCGGCGTCTCT-TCCCCGGATCGCAATCTCAACC
GTGCATTCCATCTGCATCGAACGGCAGGAGCACGCC---------TCCTCCCACCTCTCGCCCACCTT-AAAATCCCCTC
CCCGCCTC-CGGCAAACC--ACAAAACAAA-TTCACCACCGCTCCTCGACCTC-----C---ATCCGCTCGCAGCTCGAA
CCAAGGAGAGATCTGTCCGCCATGTCTGGGCGCGGCAAGGGAGGCAAGGGGCTTGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGTCTGGCTCGCCGTGGAGGCGTGAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGACGCACCCTCTACGG
CTTCGGCGGCTAGGCTCTTCCTCGCCCCCC--CTGCAG----GTCCCAAAAGCTTTATAGAACAGCGACTTGTT------
-------------CAGTTCTCTATTTGC-TCTGTAGTTCGAACTGAATCGTGGAACAAAGTTGTTCGCATGTGTTGCTGG
AAATGGAACCTGTCTCTGTGAAACAACGCGTCTCTGATTTTGTTCTGCTGCATCTCTGTTAATGTAT-GTTTGTTCTTTC
TCCTGCGATGCAAAATTGTGTGCGCTTGGGAGTTGGATTGTTGTGCCATTCTTTTACCAGGAGACCCTGACGGATGGTAC
TTGCTTGCCGAACAA-TT-GTGTATGGCCGAATCACCAACATCATTTGATCCGTTTCTGCTATTT--GATCTGATGCATT
TGTATCGGGCACCATTTATGATCCTTC----TATGTTGCAACAATGTGTGTAATCGAGATTGGGATTAGTCTGTACGCAT
TTCATACATCGTTTTCTAGATTGATTTGCCATGCCACTTA--CTCTGCAAATCATCATGTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1B_866
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GCCACGTCACCGATCCGCGGCATCGCT-CCCGCGGATCGCCATCTAGACT
GTCCACTCCATCCGCATCCAACGGCAGGCACACGCC---------TCCTCCAACCTCTCGTCCCCTTT-AAAACGCCCTT
CGCCCCTGTCCGCAAATC--ACAGCAC-CA-GCAGTCACCACTGTTCCTCCGATTCCAC---ATCTGCTCGCAGCTCGAA
GA------GGATC-GTCAGCCATGTCCGGCCGCGGCAAGGGAGGCAAGGGGCTCGGCAAGGGCGGCGCCAAGCGCCACCG
GAAGGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGCGGAGGGGCGGCGTGAAGCGCA
TCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTAC
ACCGAACACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCCTCTACGG
ATTCGGCGGCTAGGTTCTCTGTCG--CCGC--CTGCAG----ATTCCAAAAGCTTGATGGAACCCCGACTTGTC------
-------------TAGTTCGCTATTTCG-TGTGTAGTTCG----------------------------------------
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>chr1A_1726
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------------------------------------------CATTTGCTCCGTTTCTGCTATTT--AATCTGACGCATT
AGTACCGGGCACCATTTATGATCCTTC----TATGT-GCAACAATGTGT---ATTGAGATTGGGATTAGCCTG----CAT
TTCATACATCGATTTCTAGATTAATTTGCCATGCCACTTGCTCTGTGCAAATCATCATGTGATTCTTGTTAATCAGAAGT
GTCACTTGCTCTATTTCTGCTGTTTTTTA-----------TGTTACCGCAGTAATACTCTGGTCCTTTTTAGTTTGCATA
TAAGTTTTCTCCGAAGTCAAACTATCTCTACTTTGACCAAACTTATAGGAAAAAGTATCAACATTCACAATGCCAAATCA
ATATTGTTAGATTCATTATGAAATGCAGTTTCATAGTGCATATAGTTGGTATTGTAGATGTTGGTATTTTTGAACATAAA
TTTGGTCAAATTTTGCAAAGTTTGACTTGACACAAATCTAATACGCAGAGTAAAAAGGACCGGAGGGAGTACTTCATCTG
TTGCA---------------------------------------------------------------------------
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-----------------------------------------------------------------TGGCAGCAACAA---
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-----------------------------------------------------------------------CTTAATCCT
TCAGTTTATATTAACTAGCTTATCAACATAATTCTCCATCTTCATTTTCCTAATATCATATGATGCCCTAGATTAGGGGA
GTTTAGTGACAGAATAATTTATCTTAAAACCTGGGAAGATCAGTTCTTACTTGATGTGTTTACTGTATTA--GCAGGAAT
GAAAAACAGTCAGAGAGCAGTGACACGTGAATGCTAAAATCCTACAGAAGTAAACGCC--CGAGCAATGAAAAATGAGAA
TAGTAGTGGTGCATT-GCATTGGGTCAAGTTTCTTATAGATTATCTTCATTTCTCAAAAACAGTTCAGATGA
>SNPs
---S------------------------------SS---------------S--S----S----S---------------
-------S---SS-------------S----------------------------S--------------S---S-----
---S------------------------S-------S---S---------------------------------------
S-------------------------------------------------------------------------------
-------------------------SSS--S-S-S-S-S---SSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-S-------S---S--S---------S------S--------------------S--S----------
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--S---S------------------------------------------------S------------------------
-------------------------------S------------------------------------------------
-----S------------SS---------------------------S--------------S-----------------
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--S-----------------------------------------------------------------------------
--------------------------S---SS---------------S--------------------------------
S---S-----------------------------------S-----------S---------------------------
---------S-----------------S---------S---------------S-------S------------S--S--
----------------------------------------------S----------------S-----------S-S-S
--------S---S-S---S---S------S--------------S----S-----------------S------------
-----SS----S-----------S--------S----------------------S--S----------------SSSSS
-S---------------------------S-------------------------------S---S---------S-S--
SS-S------------------------------------S---------------------------------------
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--------S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
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----SS------------------------------------------------------------S-------------
--------------------------------------------------------S-----------------------
--------------------------------------------------S--------------------------S--
----------S---------------------------------S-------SS------------------
>forward_787
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-----------------------------------------------TTCCTAGTTCGCGCCATTGT-------------
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>reverse_2472
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-----------------------------------------------------------------------TTGAACCCG
TGACCTCATGG---------------------------------------------------------------------
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