>input_sequence_77592
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-------------------------------------------------------------------------------A
TGATGCGTAAGAAACTTTCGGGCGGCGGAATGGACGCGACGGTGGACGAGCTGAGCGCGGCGTATAAGGAGTTCGTGGCG
GCTGCGGTGGCCGTGATGGAAGCTCGCGAGCAGTCGGGCGGCCAGAAGATGGCAGCCACGGACGCGGCGCTTGAAGCCTT
CAAGCAGCGATGGGAGCTCTTCCGCGTCTCCTGCGACCACGCCGAGGAGCTCGTTGAGTCCATCCGCCAGCGCATCGGCT
CCGAGTGTCTCGTCGACGAGGCCACGGGATCTTCCTCTTCCGCCTCCACGCCCGCAAGCGTCGCGCTGGCTGCCCCCGGC
ATCAAGCCAATCAGCGCCGTCCGCCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTTATCGAGCTTCAGCACGGCGT
CGGAGGGCCCTCAGCTGCCGGACCTGGCGGTGGCGTCTCAACCCCGGCTGCCGGCGCCGGAGGGCAGCATGTGCACGGCG
GGGTCGAATCGCGCTTCCCCGAGGATGGCACCCAGTAG------------------------------------------
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>chr1A_1_TraesCS1A01G137500
GGATTATACATGCCTTTAGCTATACCATATGCACCTTGAGAGGATATAAGCATAGATTTTGTACTTAGTTTGCCTAGGAC
TAGAAATGACAAAGACTCAATATTTGTCGTTGTGCATCGCTTCTCTAAAATGACACATTTCATTCCATGCAACAAAGTAG
ACGATGCTTCACATGTTGCAAATCTCTTTT----------------------------------ACAATTGTCTCCGACC
GTGACGTCAAGTACTTGAGCTACTTTTGGAAGACCCTATGCATCAAACTTAGAATCAAACTCATGTTCTCTTCGGTCTAT
CATCGTCAAACCGATGGCCAAACCAAGGTGGTCAACCGTACGCTATCGACACTTGTTCGCGTGCTAATTAGGAAGAACAT
CAAGGAGTCAGAGGAGCGTTTACCTGTCGCTGAATTCACCTACAATGTGCAAGATACACGACTACGTACATGTCTCCATT
TGATATGGTGTACTGTTTCAACCCTTTGTCCCCATTAGACATCCTCCCGCTTCCTCTCCAAGGTTTCGGAGTCGGATCCG
ATGTCCGTCATGCCGGAGAAGGCCTGAGATCATCGAAATGGTGGTTGGGGGCGAAATGAAGTGGAGTGTTTAGGGTTTTG
TCTAAGATGCGGATAGGATGAATATATGCAGGATCGGAATGGGCCAGGGTGGGCTGAATCCGACGTGGAAGATGCATGCA
GGCACGTCCGGGCCTCCCCATATCCGTCTCAGATGTGGGCTGAGAATGCTTGTCAGCCCGGCCGTATAGGGCCGGTATGA
GGGGTGTGGCCGAGTCAAGATTTTGTGACCGCTCAGTGGCCGTTTGTGTAGAC-----GTATAGATGTACCAGCTCATAC
TGTATGACATAATTTTTTTCCTCATATTTATGAGAACCCTAGACAGCAAAACAAAATGGACGACCTGGATCTTCAAGCCT
ATGTGTACCTCGGTGCCTGCGAGTCGACCGTGCTCAAATTGGGGGATTTTCGGGTTATAGCGTCAGCGGAGCGTGTCGGA
TGATGCGTAAGAAACTTTCGGGCGGCGGAATGGACGCGACGGTGGACGAGCTGAGCGCGGCGTATAAGGAGTTCGTGGCG
GCTGCGGTGGCCGTGATGGAAGCTCGCGAGCAGTCGGGCGGCCAGAAGATGGCAGCCACGGACGCGGCGCTTGAAGCCTT
CAAGCAGCGATGGGAGCTCTTCCGCGTCTCCTGCGACCACGCCGAGGAGCTCGTTGAGTCCATCCGCCAGCGCATCGGCT
CCGAGTGTCTCGTCGACGAGGCCACGGGATCTTCCTCTTCCGCCTCCACGCCCGCAAGCGTCGCGCTGGCTGCCCCCGGC
ATCAAGCCAATCAGCGCCGTCCGCCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTTATCGAGCTTCAGCACGGCGT
CGGAGGGCCCTCAGCTGCCGGACCTGGCGGTGGCGTCTCAACCCCGGCTGCCGGCGCCGGAGGGCAGCATGTGCACGGCG
GGGTCGAATCGCGCTTCCCCGAGGATGGCACCCAGTAGGTACTGTTGTTGCTTATTAACTAGTAGTATCATGTTTCAAAA
AATAAGACAAGGAATTTATG----------------TGTTAAGTTTTGAGATTGGAAACATTACAGTTTGTTGTGCTCAG
CATAGTACCTGATGCGTAAAGGTGCGAAATATGGGGAAAGAACCACCAAATGATTGGCATTATTGTTGCTAGCTTGTTTC
CTTGGCTGGCTGATATTTTTTCCGTGTCTTAGTGCGCGATGCTCAACATAGTTTGGTACAATGTTTGTAGGTACTCCCTC
GGTACCTAAATATATGTCGCTGGAGAAGTTGAACTACAGTTGCTTCAATGACATATATTTCGGTACAGAGGGAGTAGTTA
TTTGTCTTTTGTAACTTAATTGTGCTAATCATCAGCTCACTGCCTTGCCTTACGTTTAAGTCTCTCATCCTCACTTTTTG
CGGGTCAGGGACAGTGTTCGGGCCAGGTAGCTAATCAAATGTCCCAGAAATTAATGCACAATGTCACAGCCTACAAGATT
GTCAGCCTATCTAAACCCTACTAAGATAGGGCTATCGACCTATGATATCTCCGAATATTAGTTTTGGCTCATCTGGATTT
CTTACTGCTCTTGCATATGATATGTCCCGAGTGCTTTCCAAGATTTCCAATTTTCTAGTGAATCATCTGTGTTTCTTGTG
TTAAGAGATAATAAGATCCACAAGCAGCAACATACGCGATATTTAACATTGAGAAATAATATGACATGGCTTATGATATT
TCAACACCAAATATACTAGATGGTCATTAGATGTTTCATTTCCATGTAATGTTCTCTATGTTACTCATCTATTTGGATAT
AGGCAAAACTTTTACTGGATGGCGTGTCATTTTTTGTCTAACCAGTTGAATTTATGTAACCTATGTTGATCATATTCGCT
CTCGACACTGTTCTAGCCGTTTAAGTGTTGTAAGTCAAGGTCTCTGAGCACTTACTCTGCCACCTACGCGTTAGCAGCAA
GCTATAAATAGTGT
>chr1D_1
GGATTATACATGCCTTTAGCTATACCATATGCACCTTGAGAGGATATAACCATGGATTTTGTACTTAGTTTGCCTAGGAC
TAGAAATGGCAAAGACTCAATATTTGCTGTTGTGCATCGCTTCTCTTAAAGGACACATTTCATTCCATGCAACAAAGTAG
CCGATGCTTCACATGTTGCAAATCTCTTTTGTAGGGCATCTTACATCTTCATGGAGTGCTAAAAACAATTGTCTCCTACC
ATGACATCAAGTACTTCAGCTACTTTTGGAAGACCCTATGCACCAAACTTGGAATCAAACTCATGTTCTCTCTGGTCTAT
CATCGCCAAACCGATGACCAAACCGAGGTGGTCAACCATAC--------------TTCGCGTGCTCATTAGGAAGAACAT
CAAGGAGTCGGAGGAGCGCTTACCTGTCGCTGAATTCACCTACAATGTGCAAGATACATGACTACGTACATGTCTCCATT
TGATGTGGTGTACTGTTTCAACCCTTTGTCCCCATTAGACATCCTCCCGCTTCCTCTCCAAGGTTTCGGAGTCGAATCCG
ATGTCCGTCATGCCGGAGAAGGCCTGAGATCACCAAAATGGAGGTTGGGGGCGGAATGAAGTGGAGTGGCTAGGGTTTTG
TCTAAGATGCGGATAGGGTGAATATATGCAGGATCGGGATGGGCCAGCGTGGGCTAGATCCGACGTGGCGGATGCGCCCA
GACACGTCCGGGCCTCCCCATATCCGTCTCAGATGTGGGCTGAGGATGTTTGTCAGCCCGGCCGTATAGGGCCGGTATGA
GGGCTGCGGTCGAGTCAAGATTTTGTGACCATTCACTGACTAGGCCGTCTGCCCAGATGTATAGATGTACCAGCTCATAC
TGTATGACATAATTTTTTTTCTCATATTTATGAGAACCCTAGACAGTAAAACAAAATGGACGGCCTGGATCTTCAAGCCT
ATGTGTACCTGGGTACCTGCGAGTCCCCCGTGCTCAAATTGGGGGATTTTCGGGTTATAGCGTCAGCGGAGCGTGTCGGA
TGATGCGTAAGAAACGTTCGGGCGGCGGAATGGACGCGACGGTCGACGAGCTGAGCGCGGCGTATAAGGAGTTCGTGGCG
GCTGCGGTGGCCGTGATGGAAGCTCGCGAGCAGTCGGGCGGCCAGAAGACGGCAGCCACAGACGCGGCGCTTGAAGCCTT
CAAGCAGCGATGGGAGCTCTTCCGCGTCTCCTGCGACCACGCCGAGGAGCTCGTTGAGTCCATCCGCCAGCGCATCGGCT
CCGAGTGTCTCGTCGACGAGGCCACGGGATCTTCCTCTTCCGCCTCCGCGCCCGCAAGCGTCGCGCTGGCTGCCCCCGGC
ATCAAGCCAATCAGCGCCGTCCGCCTCGAGCAGATGAGCAAGGCCGTCCGCTGGCTCGTTATCGAGCTTCAGCACGGCGC
CGGAGGGCCCTCAGCTGCCGGACCTGGCGGTGGCGTCTCAACCCCGGCTGCCGGCGCCGGAGGGCAGCATGTGCACGGCG
GGGTCGAATCGCGCTTCCCCGAGGATGGCACCCAGTAGGTACTGTTGTTGCTTATTAAGTAGTAGTATCATGTTTCAAAA
AATAAGACAAGGAATTTATGTGATATGTGTGTTAACTGTTAAGTTTTGAGATTGGAAACATTACGGTTTGTTGTGCTCAG
CATAGTACCTGATGCGTAAAGGTGCGAAATATGGGGAAAGAACCACCAAATGATTGGCATTATTATTGCTAGCTTTTTTC
CTTGGCTGGCTGATATTTTTTCCGTGTCTTAGTGCGCGATGCTCGACATAGTTTGGTACAATTTTTGTAGGTACTCCCTC
GGTACCTAAATATATGTCGCTGGAGAAGTTGAACTACAGTTGCTTCAACGACATATATTCCGGTACAGAGGGAGTAGTTA
TCTGTCTTTTGTAACTTAATTGTGCTAATCATCAGCTCACTGCCTTGCCTTACGTTTAAGTCTCTCTTCCTCACTTTTTG
CGGGTCAGGGACAGTGTTCGGGCCAGGTAGCTAATCAAATGTCCCAGAAAATAATGCACAATGTCACAGCCTACAAGATT
GTCAGCTTATCTAAACCCTACTAAGATAGGGCTATCGACCTATGATATCTCCGAATATTAGTTTTGGCTCATCTGGATTT
CTTACTGCTCTTGCATATGATATGTCCTGAGTGCTTTCCAAGATTTCCAATTTTCTAGTGAATCATCTGTGTTTCTTGCG
TTAAGAGATAATAATATCCACAAGCAGCAACATACGCGATAGTTAACATTGAGAAATAATATGACATGGCTTATGATATT
TGAACACCAAATATACTAGATGGTCATTAGATGTTCCATTTCCATGTAATGTTCTCTATGTTACTCATCTATTTGGATAT
AGGCAAAACTTTTACTGGATGGCGTGTCATTTTTTGTCTAACCAGTTGAATTTATGTAACCTATGTTGATCATATTCGCA
GTGGACACTGTTCTAGCCATTTAAGTGTTGTAAGTCAAGGTCTCTGAGCACTTACGCTGCCACCTACGCGTTAGCAGCAA
GCTATAAATAGTG-
>SNPs
-------------------------------------------------S---S--------------------------
--------S-----------------SS------------------S---S-----------------------------
S---------------------------------------------------------------------------S---
S----S----------S-------------------------S-------S--------------------SS-------
-----S----------S-------S------------S---SSSSSSSSSSSSSS----------S--------------
---------S--------S---------------------------------------S---------------------
----S---------------------------------------------------------------------S-----
--------------------------------S-S------S-----------S--------------SS----------
-----------------S-------------------S---------S-------SS-----------SS-----SSS--
-S------------------------------------------S---S-------------------------------
---S--S--S--------------------SS---S--S-SSSSSSSSSS-S----------------------------
-------------------S--------------------------S---------------S-----------------
----------S---S----------SS-----------------------------------------------------
---------------S---------------------------S------------------------------------
-------------------------------------------------S---------S--------------------
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-----------------------------------------------S--------------------------------
-------------------------------------------------------------------------------S
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----------------------------------------------------------S---------------------
----------------------------------------------------------------S---------------
----------------------------------------------------------------S----------S----
--------------------------------------------S-----------------S-----------------
------------------------------------------------S----------S--------------------
-S----------------------------------------------------------------S-------------
--------------------------------------------------S-----------------------------
------S-------------------------------------------------------------------------
---------------------------S--------------------------------------------------S-
--------------S--------------------------S--------------------------------------
-S---------------------------------S--------------------------------------------
-------------------------------------------------------------------------------S
S-S---------------S------------------------------------S------------------------
-------------S
>forward_804
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----------------------------------------------------------------TATAGGGCCGGTATGA
GGGG----------------------------------------------------------------------------
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>reverse_2481
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CTCGACACTGTTCTAGCCGT------------------------------------------------------------
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