>input_sequence_77553
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----------------------------------------------------------------------------ATGG
CGAGGAGCACGCGGTCGGTGGCGACAGAGCGCGCCTACCACCACTTCGCGCCGGCGTCGACGCGCGGCCTCACGGGGTAC
CCGGCCACGGCAGGCGGCCCCGTCACGGCGGACGAGTTCGACGAGTCAGACGTCTGGGGTTCGTTCAACCCGGCAGAGGA
GGCCGAACAACCGGCAAGGTCGGGCGCCGAGCTACCCCGGGTCCGCGCAGTCCCGGCTGCCCGTCCCGGGAGGAAGACCA
AGCCGATG---------GGCGGGGGCGGCGCCGCGCACGGGTCGCTGCCCGTGGCCATACCGGACTGGTCCAAGATCCTT
GGGGATGAGTACCAGGGGCACCAGGCCGGGGACTGGGAGCTGGACGACGCGGACGACGAGGACGTCGAGGGCGCCCCGGT
GGTGCCACCGCACGAGCTGGCGTGGCGGCGCCGGGCCGCATCGCTGTCGGTGAACGACGGGATGGGGGTCGGCAGGATGC
TCAAGGTCCGGGACGCGGTCTGGAAGAAGACAGGGTTCCAGGCCTGA---------------------------------
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>chr6D_1_TraesCS6D01G212800
GACCGGGTCTACGGCTCTCGTCGCATGCG-----TCCGCTCTAGTCGATCATCATGCATGCATGCATGCATGCAGGCAGG
CAGG----------------GCAGGGCCAAAGTTGCCAACAGATAACGATCCGGCACGTACGTGTGCGTGCGCGGCATCG
ATTGATATATGGAGTC--------TGGGACCCATGCATGGCCTGCCTGGAGCATCAATTGTGGCTGACATTCATTACTAA
CGGGCCTTAAATTTGTCGCGGAGAAAAGCTGGTGTGCAATCCTCGACGTTCGTCGTGTGATCTAGACACATGTACGTCTA
TGTGCATCTCGCTCCAGCCAAAAGCAATTCCA-GGATATCGCTGACACAGCGGATGTTACTAACACGTATGCTTCTG---
------------------------------------------------------------------------------TA
AAGATGTCAACCAGGACGAGATAATCCAACATGTGTGACTAGGCCAACTTCCATATGGAGATTGAACAAACACTTGCTAT
TGATCGCTCCCTGAGAGCCAGATTAGAGAGCAAGTTGCCAAGAAACTCTTCTA----TAGTTTCCGGGCGCGGCACGGAT
AAGACTTTCTGATCATGTAGGACTGAATTGCTGCGTTTCTTATCCAGAAAGAAAA-TCACTAGGCCCACTACGTTAGCAG
CTGCCAATAGCAACGCGCCAGCACCACCCGAAATCCTGTTAACCACACAAAACACCTACGTACGTGGCGGTTTGACACCG
CGAAGAGGTTTGGGACCCAGCTGGCAGTGGCACGGCGGAGATATCATCCACGTAGCATTCCAAAACGTCAAGGGTGAAAC
GGTCATTCCATAAAACGGCCTTATCCACTTCCTCCGCTTTCTGCTCTCGGCCTTCCGGCTCATATAAATCCCAGCGCAAC
CACCAGCGCACGCCTTCCTTCCTACCTTCTACCCGCCGCGGCTCCGCAGGTCTTCAACTTCCTCGCCTCCTTGCGCGATC
TGCTTCACGTTTCCCCTCACCGCCCCATTCGCGCTGCACGTTTGCACGGCGAGCAGGCACGGACGGCACGGCCGCAATGG
CGAGGAGCACGCGGTCGGTGGCGACAGAGCGCGCCTACCACCACTTCGCGCCGGCGTCGACGCGCGGCCTCACGGGGTAC
CCGGCCACGGCAGGCGGCCCCGTCACGGCGGACGAGTTCGACGAGTCAGACGTCTGGGGTTCGTTCAACCCGGCAGAGGA
GGCCGAACAACCGGCAAGGTCGGGCGCCGAGCTACCCCGGGTCCGCGCAGTCCCGGCTGCCCGTCCCGGGAGGAAGACCA
AGCCGATG---------GGCGGGGGCGGCGCCGCGCACGGGTCGCTGCCCGTGGCCATACCGGACTGGTCCAAGATCCTT
GGGGATGAGTACCAGGGGCACCAGGCCGGGGACTGGGAGCTGGACGACGCGGACGACGAGGACGTCGAGGGCGCCCCGGT
GGTGCCACCGCACGAGCTGGCGTGGCGGCGCCGGGCCGCATCGCTGTCGGTGAACGACGGGATGGGGGTCGGCAGGATGC
TCAAGGTCCGGGACGCGGTCTGGAAGAAGACAGGGTTCCAGGCCTGACGCG--CTCGGGCCGGCGTCGTCGCCCGCCACT
ACTAGCTGTTTTCTTTTGACAGATCGATTCGGATAAAGCTAGCTACTAGCGTTTCTACAAGT------------------
-----------------------TGGTTGTTTTGACAGAGCTTTGGCCTCCGGCGTAGAGAGAGGAGTGAAAACTGATGA
GTGATCATTGTTCTTCGATTGTTCGTCCCTGCTGTGCAGTGTTTTCCGGAGAGAACGCGG--------------------
AATGTTTTCTGATCCTGCGCAATTTTTTTTTGTGTAGCACCACGCAAGGGATAGAGCAGCTA------CTGCTAATTGTG
CTTACAGCAGCTAAATGATTTGTCGAGGGGATGATCAG--------TGGGCGACTTTTTCTTCGAGAGTGTTGTCCTTAT
CTGTGCATCAGCACGGCCATCATCGGTGATTGCCAAATTTCACCAACCACA---TAAGCGAATATGCCAAAAGCTATGTT
GCGCCAACTGATTGGACAAAACAACTGGCGGTTGTTACACTATCAGCAA----G-AATACGCTGGCCAAAAAGTCAAGCC
AATGATG--CTCGTACCAGCGAAATTTCTGGCCGGCTTACTGAACGTGTACGTTATTGCCCTGTACTACAACAGTGCAGT
GGATGGATTGTCGTTGCCCGTTCACTCACCAGTGGACCGTGTATATCTTTCGGGGCCACGTACAAAACTTCC---AAACA
AAAAACCAAAGTAAGTAACGGTCCTGAGAGCAACTCCAACGGGGCGATCTATTCCGTCCTGTTAGGGATATAACTATTGG
AGTTAACCCGCCCAGAAGGGGGTCGGGTTAAGCCCATGGCGGTTTAACAAGGCAAAACTCAGGAGGATGCTGAAGACAAT
TCACTGCACATTGCTTGAAGGCCTGAAGCCCAAAGGCGACTTAAGGCCCAATTAGTGTAAACCGCCATATGTGTATGACT
TGTATTATAAGGCATGTACAATTAGTCACCGAGCCGGACACGTTGTCTACGAGCCGGCCGGGACTCCGTGAGTGTGACAC
CCCCGATTTGACCGTAC
>chr6B_1
GACTGGGTCTACGGCTCTCGGCGCATGCATCCGCTCCGCTCTAGTCGATCATCATGCATGCATGCAGGCA----------
--GG----------------GCAGGGCCAAAGTTGCCAACAGATAACGATCCGGCACGTAC--GTGCGTGCGCGGCATCG
ATTGACGCTCTGATTCGTGGGCTTTGGGACCCATGCATGGCCTGCCTGGAGCATCAATTATGGCCGACATTCATTACTAA
CGAGCCTTAAATTTGTCGCGGAGAAAAGCTGGTGTGCAATCCTCGACGTTCGTCGTGTGATCTAGACACATGTACGTCTA
TGTGCATCTCGCGCCAGCCAAAAGCAATTTCA-GGATATCGCTGACACAGCGGATGTTACTAACACGTACTCCCTCCGTA
AAGAAATATAAAAGCATTTAGATCACTAAAATAGTATTCTAAATGCTTTTATATTTGTTTACAGAGGGAGTACTCCTCTA
AAGATGTCAACCAGGATGAGATAATCCAACATGTGTGACTAGACCAACTTCCATATGGAGATTGGACAAACACTTCCTAT
TAATAGCTCCTTCAGAGCCAGATTAGAGAACAAATTGCCAAGAAACACTTCTA----TAGTTTCCGGGCGCGGCACGGAT
AAGACTTTCTGATCATGTAGGACTGAATTGCTGCTTTTCTTATCCAGAAAGAAAA-TCACTAGGTCCACTACGTTAACAG
CTGCCAATAGCAACGCGCCAGCACCCCCCGAAATCCTGTTAACCACACAAAACACCTACGTACGTGGCGGTTTGACACCG
CGAAGAGGTTTGGGACCCAGCTGGCAGTGGCACGGCGGAGATATCATCCACGTAGCAATCCAAAACGTCAAGGGTGAAAC
GGTCATTCCATAAGACGGCCTTATCCACCTCCTCCACTTTCTGCTCTCGTCCTTCCGGCTCGTATAAATCCCAGCCTAAC
CACCAGCGCACGCCTTCCTTCCTACCTTCTACCCGCCGCGGTTCCGCAGGTCTTCAACTTCCTCGCCTCCTTGCGCAATC
TGCTTCACGTTTCCCCTCACCGCTCCATTCGCGCTGCACGTTTGCACGGCGAGCAGGCAAGTACGGCACGGCTGCAATGG
CGAGGAGCACGCGGTCGGTGGCGACAGAGCGCGCCTACCACCACTTCGCGCCGGCGTCGACGCGTGGCCTCACGGGGTAC
CCGGCCACGGCAGGCGGCCCCGTCACGGCCGACGAGTTCGACGAGTCAGACGTCTGGGGGTCGTTCAACCCGGCAGAGGA
GGCCGAACAACCGGCAAGGTCGGGTGCCGAGCTTCCCCGGGCCCGTGCAGTCCCGGCTGCCCGTCCTGTGAGGAAGACGA
AGCCGGTG---------GGCGGGGGCGGCACCGCGCACGGGTCGCTACCCGTGGCCATACCGGACTGGGCCAAGATCCTT
GGGGATGAGTACCAGGGGCACCAGGCCGGGGACTGGGAGCTAGACGACGCGGACGACGAGGACGTCGAGGGCGCCTCGGT
GGTGCCGCCGCACGAGCTGGCGTGGCGGCGCCGGGCCGCATCGCTGTCTGTGAACGACGGGATGGGGGTCGGCAGGATGC
TCAAGGTCCGAGACGCGGTCTGGAAGAAGACAGGGTTCCAGGCCTGAGGCG--CTCGGGCCGGCGTCGTCGCCCGCCACT
ACTAGCTGTTTTCTTTTGACAGATCGATTCGGATAAAGCTAGCTACTAGCGCTTCTAGAAGT------------------
-----------------------TGGTTGTTTTGACAGAGCTTTGGCCTCCGGGGTAGAGAGAGGAGTGGAAACTGATGA
GTGATCATAGTTCTTCGATTGTTCGTTCCTGCTGTGCAGTGTTTTCCGGAGAGAACGCGG--------------------
AATTTTT----------------------GTGTGTAGCACCACGCAAGGGATAGATCAGCTA------CTGCTAATTGTG
CTTACAGCAGCAAAATGATTTGTGGAGAAGTTGATCAGTGGGCGTCTGGGCGACTTTTTCTTCGAGCGTGTTGTCCTTAT
CTGCGCATCAGCACAGCCATCATCGGTGATTGCCAAATTTCACCAACCACA---TAAGCGAATATGCCAAAAGCTGTGCT
GCACCAACTGATTGGATGAAACAACTGACACTTGTTATACTACTATCAGCGAGGAAATACGCGGACCAAAAAGTCACGCC
AATGATGCTCTCGTACCAGCGAAATTTCTGGCCGGCTTACTGAACGTGTACGTTATTGCCCTGTACCACAACAGTGCAGT
GGATGGACTGTCGTTGCCCGTTCACTCAGCAGTGGA----------CTTTCGGGGCCACGTACAAAACTGCCTCAAAACA
AAAAACTAAAGTAA------------------------------------------------------------------
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>chr6A_1
GACTGGGTCTACGGCTCTCGTCGCATGCATCCGCTC-----TAGTCGATCATCAAGCACGCATGCATGCA----------
--GGCAGGCAGGCAGGCAGGGCAAGGCCAAAGTTGCCAACAGATAACGATCCGGCACGTAA--GTGCGTGCGCGGCATCG
ATTGACGCTCTAATCCGTGGGGTTTGGGACCCATGCATGGCCTGCCTGGAGCATCAATTATGGCCGACATTCATTACTAA
CGAGCCTTAAATTTGTCGCCGAGAAAAGCTGGTGTGCAATCCTCGACGTTCGTCGTGTGATCTAGACACATGTACGTCTA
TGTGCATCACGCGCCAGCCAAAAGCAATTCTACGGATATCGCTGCCAAAGCGGATGTTACTAACACGTATGCTTATG---
------------------------------------------------------------------------------TA
AAGATGTCAACCAGGATGAGATAATCCAACATGTGTGACTAGGCCAACTTCCATATGGAGATGGAACAAACACTTGCTAT
TAATCGCTCCCTGAGAGCCAGATCAGAGAACAAATTGCCAAGAAACTCTTCTATAATTAGTTTCCGGGCGCGGCACGGAT
AAGACTTTCTGATCGTGTAGGACTGAATTGCTGCGTTTCTTATCCAGAAAGAAAAATCACTAGGCCCACTACGTTAGCAG
CTGCCAATAGCAACGCGCCAGCACCACCCGAAATCCTGTTAACCACACAAAACACCTACGTACGTGGCGGTTTGACACCG
CGAAGAGGCTTGGGACCCAGCTGGCAGTGGCACGGCGTAGATATCATCCACGTAGCAATCCAAAACGTCAAGGATGAAAC
GGTCATTCCATAAAACGGCCTTATCCACTTGCCCCGCTTTCTGCTCTCGTCCTTCCAGCTCATATAAATCCCAGCGCAAC
CACCAGCGCACGCCTTCCTTCCTACCTTCTACCCGCCGCGGTTCCGCAGGTCTTCAACTTCCTCGCCTCCTTGCGCGATC
TGCTTCACGTTTCCCCTCACCGCTCCATTCGCGCTGCACGTTTGCACGGCGAGCAGGCAT---------GGCCGCAATGG
CGAGGAGCACGCGGTCGGTGGCGACGGAGCGCGCGTACCACCACTTCGCGCCGGCGTCGACGCGCGGCCTCATGGGGTAC
CCGGCCACGGCAGGCGGCCCCGTCACGGCCGACGAGTTCGACGAGTCAGACGTCTGGGGGTCGTTCAACCCGGGAGAGGA
GGCCGAACAACCGGCAAGGTCGGGTGCCGAGCTACCCCGGGTCCGTGCAGTCCCGGTTGCCCGTCCCGGGAGGAAGACGA
AGCCGGTGGACAGGGCCGGCGGGGGCGGCGCCGCGCACGGGTCGCTGCCCGTGGCCATACCGGACTGGTCCAAGATCCTT
GGGGGCGAGTACCAGGGGCACCAGGCCGGGGACTGGGAGCTGGACGACGCGGACGACGAGGACGTCGAGGGCGCCCCGGT
GGTGCCGCCGCACGAGCTGGCGTCGCGGCGCCGTGCCGCATCGCTGTCGGTGAACGATGGGATGGGGGTCGGCAGGATGC
TCAAGGTCCGGGACGCGGTCTGGAAGAAGACGGGGTTCCAGGCCTGACGCGCTCTCGGGCCGGCGTCGTCGCCCGCCACT
ACTAGCTGTTTTCTTTTGACAGATCGAATCGGATAAAGCTAGCTGCTACTCCCACAAGTTGGGCCATCTATTTTAGAATG
GAGGGAGTAGCTCGTAGAAGTTGTGGTTATTTTGACAGAGCTTTGGCCTCCGGGGTAGAGAGAGGAGTGGATGCTGAGGA
GTGATCATTGTTCTTCGATTGTTCGTTCCTGCTGTGCAGTGTTTTCCGGAGAGAACGCGGAACGTTTTCTGATCCTGCGC
AATTTTT----------------------TTGTGTAGCACCACGCAAGGGATAGAGCAGCTACTCCTACTGCTAATTGTG
CTTACTGCAGAAAAATGATTTGTCGAGGGGATGATCAG--------TGGGCGACTTTTTCTTGGAGAGTTTTGTCCTTAT
CTGCGCATCAGCACGGCCATCATCGGTGATTGCCAAATTTCACCAACCGCACAGTAAGCGAATATGCCAAAAGCTACGTT
GCGCCAACTGATTGGACAAAACAACTGGCGGTTGTTACACTATCAGCAA----GAAATACGCTGGCCAAAAAGTCACGCC
AATGATGCTCTCGTATCAGCGAAATTTCTGGCCGGCTTACTGAACGTGTACGTTATTGCCCTGTACTACAACAGTACAAT
GGATGGATTGTCGTTCCCAATTCACTCACCAGTGGACCGTGTATATCTGTCGGGGCCACGTACAAAACTGCC---AAACC
AAAAACTAAAGTAA------------------------------------------------------------------
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>SNPs
---S------------------------S-----------------------------------------SSSSSSSSSS
SS-----------------------------------------------------------SS-----------------
-----SSSSSS--S---------------------------------------------S----S---------------
--S-----------------------------------------------------------------------------
------------S-------------------------------------------------------------S-----
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----------------S---------------------------------------------------------------
-S---------------------------S---S----------------------------------------------
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---------------------------------------------------------S----------------------
-------------------------------------------------S------------------------------
-----------------------------------------S--------------------------------------
-----------------------S-----------------------------------S-S------------------
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-----------------------------S-----------------------------S--------------------
------------------------S--------------------S--------------------------------S-
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-----S----------------------
-----------------------------------------------------S---------------S----------
--------------------------S-----------------------------------------------------
---S---SSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------
-----------S--------------------------------------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
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---------------------------------------------------------------------S----------
------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_168
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--------------------------------------------------------------------TGCGCGGCATCG
ATTGATAT------------------------------------------------------------------------
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>reverse_1230
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-----------------------------GGACGAGTTCGACGAGTCAG-------------------------------
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>forward_333
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-------------------------------------------------------------------------ACGTCTA
TGTGCATCTCGCT-------------------------------------------------------------------
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>reverse_2476
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---------------------------------------------------------------------------ATTGG
AGTTAACCCGCCCAG-----------------------------------------------------------------
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