>input_sequence_77542
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-------------------------------------------------------------------ATGGGCTTACAAA
TACAAACAGTAGGAAACCGAACGCAGTCACCAAGGCTCTTGGCGATCCCTAAAAAACACACAAGGCTCTTGCGTGCTTTC
CGACCTATCCGCCGATCGCCGCCGCAGTCGCCCCGATCGATCCAGCAGGAGTTCAGGGCTGAGGATCTGGGCATGGGGCC
GCCGCGTAAGCGGGCGGAGGAGGATATGGAGGTGGACGAGGACAACGCCGACGATGTCCGTGCCGGCGCGCTTGCCATGG
GGGAGGAGCGCGAACTCGGGAACATGAGGAAGAGGGGACCGGAGGCCGAGGAGGAGGGCGACGAACTGTACACCTTCCCG
GTGGATAATCGGTCCGGCAAGCTTGCCAAGTGGAACACGTGGGAGAAGAAGGTGGAGGCG------AGCAGGTTGGAGGA
GCTCGTGAGGAGGCGCATGGACGGAGGCCGTCGTTTCGATGGCGCACCAGCCGCCGCCGCCACCGCCGTCGACACCGCGT
GGCTGCGTTCACCAATTAGACCAGCGCAAATT-----TAG----------------------------------------
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>chr5D_1_TraesCS5D01G393500
TATTAGCCCATTATACTATAATTTTT--TTTTACAAAATGATAAAGATACGCAAATATTGAAACACATTTTTTAGCAAGT
CCGTTGGTTTTTACAACAGTTTTTGCATGCTGAAGGATAGTGCAAGTTTTACTCAAAGTGTGTACAACTTTTGTTTCACT
AAATTTCCCGGTTTAGTTTATTTGTCAGATTCTGAAATATATGTTTTTTTTTTCCTTTTCTACAAGGTTACAATACTTTG
AAATTTTAACTAGAGGGCAGCCTGGTGCACGTAGCTCAGCGGGAACTACGTGCATGGGGCTG-CCCCTAGCTAAAAATT-
GAAGATAATTTTAAGCACGTAGATTTTTTAACAGAGAATCTCAAAATAAAATAACTAGAGTACATAAAAAGTGGTTTTGT
ATTTATTTAGCTTATTACAAGGGAAAATTTGCACACACTTTAGACTATTGG-----ATTTATTGTATGACTAAGTTCTAC
TAAAATTTCAAGCAGCTCAGAATTAGAAAGTCCGTTTGTTTTTATGTACAATAAAAATTTGATAGATAGAAAAATAATAG
AGATGCAAAGAATCGACCAGTAGTCGGATGGTCACATCTAAAATCGCCAACATGAACACAAACGAAATCGTGTGAATTTC
GTATAGAAAGAAAAAAGAAACAAGTAAAAAAGCGTGGTCCCCGTTGTACCAACCAACAAGAGTTCAAACCTAGCCTTATG
TCTTGTTAGTCAGAATGTCTTTTCAGTGAAAGACA-TGTCACATC----------------GTGGTAACTTAATCGAGTG
CGAAAACTCTGCAACTCTAATCTTCGGTAAACATCGTGTGACGCTGTGCTTTT-TGTGCTAAGTCAGGTTGACTATTCTG
CGTGTGGTGTTTTTGTTTCTGGGAAATGCCCTCATGTGTCTATCTCGGCCTATTTTTCCTGCCGGGTTTTACTAAAAAAA
AACAATCAGCGATATCTTTATCTGGGCATATCTATCATAGGCCCAACTAGATTCGGACTCGGACCCAATGGGCTTACAAA
TACAAACAGTAGGAAACCGAACGCAGTCACCAAGGCTCTTGGCGATCCCTAAAAAACACACAAGGCTCTTGCGTGCTTTC
CGACCTATCCGCCGATCGCCGCCGCAGTCGCCCCGATCGATCCAGCAGGAGTTCAGGGCTGAGGATCTGGGCATGGGGCC
GCCGCGTAAGCGGGCGGAGGAGGATATGGAGGTGGACGAGGACAACGCCGACGATGTCCGTGCCGGCGCGCTTGCCATGG
GGGAGGAGCGCGAACTCGGGAACATGAGGAAGAGGGGACCGGAGGCCGAGGAGGAGGGCGACGAACTGTACACCTTCCCG
GTGGATAATCGGTCCGGCAAGCTTGCCAAGTGGAACACGTGGGAGAAGAAGGTGGAGGCG------AGCAGGTTGGAGGA
GCTCGTGAGGAGGCGCATGGACGGAGGCCGTCGTTTCGATGGCGCACCAGCCGCCGCCGCCACCGCCGTCGACACCGCGT
GGCTGCGTTCACCAATTAGACCAGCGCAAATT-----TAGCATAGCGTATCGACTGTCAACTGCACAAAATGAGCTGATT
TGAGGTACTTCGGTGCTTGGACACAATTCTTGGCTACTCATGACAAGTGTTCTTTTTTATACAGTATAATTTTTTATCCC
ACTTTCTGCCCACTAAGTATCTAAAATCCACGACTTTTTAGCTCGCATGCTAGGCTTCTTTCTATTGCAAGATGAAAACC
TAGTAGGAATACGAAAGAGCGTCTGATTGAGATCTCACCAATTTTATATTCGACATGATTTTAAAACACATGTATATGGT
TGAAGTTCATGTTGGAATTCTTATGAAATGGAGGGCATGGAAATGGATTCCATAGAAATTTGGTAGGTCCAATCATATGA
TCAACAGGGGTTTTCCTTAGAAAAAATTAAGAGTTAAATCCTTCATACTAACTACGGAAACCCCAATCCAAATGGGCCCT
GAAGTTTTTCGTCCTGAAACGATATACATGTGTAATATACATCCCTATACATGTGGATTTTCCTTCAGAATTTGAAACTT
TAAAAATCCGATGTTTGACTTTGTCAAAAGAAAAGTTCAATGTGGAGCCCGAGCTCTAGAATGCCTGACTCCATAATGTA
GTTCAGATGTTTGGCTATGTGTAACATATTTATTTATCATTTTCCCAATTTATACCCGACTTGTCATCCGGCAACTCATG
TTGGATACATAAAGGGGTGAAGCGTTTCCCAAACTGCTGCTGGCCTTAGGGCAACTCCAATGCTGACCCAAACTGGACAC
CGCATCCGTTCGCGGACCCCGAGGGGAGAGGGGGAGTCCGCGGACACTGATGCGGGAGCCGGCCATCGAAAGCTAGCCGC
ATACATCGCCCCCATTTTCTTTCAGTCCGCACACTCAAATAGTCGAATATCTAGTTTCAGTTAGCTAAAAATTCTTCAAA
TGTTTAAATGCAACAGTAGTTCTAATTTAAATATTACAAGCCAACAAAGTATTCAAATTATAGTAGTTCAAACTTGAATT
>chr5A_1
TATTATCCAATTATACTATAACATTTTCTTTTACAAAATGATAAAGATACGCAAATATTGAAACACAATTTTTAGCAAGT
CCGTTTGTTTTTACAACAGTTTTTGCATGCTGAAGGATAGTGCAAGTTTTACTCAAAGTGTGTACAACTTTTGTTTCACT
AAATTTCCCGGTTTAGTTTATTTGTCAGATTCTGAAATACATGTTTTTTT---CCTTTTCTACAAGGTTACAATACTTTC
AAATTTTAACTAGAGGGCAGCCTGGTGCACGTAGCTCAGCGGGAACTACGTGCATGTGGCTGCCCCCTAGCTAAAAATTT
GAAGATAATTTTAAGCACATATAATTTTTAATAGAGAATCTCAAAAAAT--TAGCTAGAGTAATTAAAAATTATTTTTGT
ATTTATTTAGCTTATTAAAATGGAAAATTTGCACACACTTTAAACTATTATATTGAACTTATTACGGGTTTAAGTTCTAC
AAAAATTTCAAGCAACTCAGGATTAGGAAGCCCGTTTGTATTTATGTACAATAAAATTT-----GATAGGAAAATAATAA
AGATGCAAAAA-TCAACCATCGGATG------------------------------------------------------
------------------------------------------GTTGTACCAACCCAGGAGAGTTCAAACCTATCCTTATG
TCTTGTTAATCAGAATGTCTCTTCAGTGAAAGACAATGTCACATTGATAGAGGGGACACATATGGTGACTTCATCGAGTG
CGAAAACTCTGTAACTCTAATTTGCAGTAAACATCGTGTGATGCTCTGATTTTTTGTGTTAAGTCAGATTGACTATTTTG
CGTGTGGTGTTTTTTTTTTTTGCCAATGCCCTCAAGTGTCTATCTCGGCCTATTTTTCCTACCGGGCTTCTACC------
--CAATCAGCGATATCTTTATCTGGGCATGTCCATCATGGGCCCAACTAGATTCGGACTCGGACCCAATGGGCTTACAAA
TACAAACAGCAGGAAACCGAACGTAGTCACCAAGGCTCT------------------------------TGCGTGCTTTC
CGACCTATCCGCCAATCGCCGCCGCAGTCGCCCCGATCGATCCAGCCGGAGTTCAGGGCGGAGGATCAGAGCATGGGGCC
GCCGCGTAAGCGGACGGAGGAGGATATGGAGGTGGACGAGGACAACGCCGACGATGTCCGTGCCGGCGCGCTTGCCACGG
TAGAGGAGCGCGAACTCGGGAACATGAGGAAGAAAGGACCGGAGGCCGAGGAGGAGGGCGACGAACTGTACACCTTCCCG
TTGGATAATCGGTCCGGGAAGCTCGCCAAGTGGAACACGCGGGAGAAGAAGGTGGAGGCG------AGCAGGTTGGCCGA
GCTCGTGAGGAGGCGCATGGACGGAGGCCGTCGTTTCGATGGCGCACCAGCCGCCGCCGCCG------TTGACACCGCGT
GGCTGCGTTCACCAATTAGACCAGCGCAAATTTAGCATAGCGTATCGTATCGACTGTCAACTGCACAAAATGAACTGATT
TGAGATATTTCGGTGCTTGGACACAATTCTTGGCTACTCATGACAAGTGTTCTTTTTT----------------------
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>chr5B_431
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----------------------------------ACACTTTAGACTATTGC-----ACTTATTACGGGACTAAGTTCTAC
AAAAATTTCAAGCAACTCAGACTTAGGAAGTCCCTTTGCTTTTATGTACAATAAAAATTTGATAGATAGAAAAATAATAA
AGATGCAAAAAATCAACCATCAGATG------------------------------------------------------
------------------------------------------GTTGTACCAACCCACGAGAGTTCAAACCTAGCCTCATG
TCTTGTTAGTCAGAATGTCTTTTCAGTGAAAGACAATGTCACATTGATAGAGGG-ACACATGTGGTGACTTGATCGAGTG
CGAAAAATCT-------------TCAGTAAACATCGTGTGACGCCGTGATTTTTTGTGT---------------------
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----------------------TGGCCATGTCCACCATGGGCCCAACAAGATTCGGACTCGGACCCAATGGGCTTACAAA
TACAAACAGCAGGAAACCGAACCTAGTCACCAAGGCTCTTGGCGATCCCTAAAAAA-ACACAAGCCTCCTGCGTGCTTTC
CGAACTATCCGCCAATCGCCGCCGCAGTCGCCCCGATCGATCCAGCAGGAGT--------GAGGATCAGGGCATGGGGCC
GCCGCGTAAGCGGACGGAGGAGGATATGGAGGTGGACGAGGACAACGCCGACGATGTCCGTGCCGGCGCGCTTGCCACGG
TAGAGGAGCGCGAACTCGGGAACATGAGGAAGAGGGGACCGGAGGCCGAAGAGGAGGGCGACGAACTGTACACCTTCCCG
TTGGATAATCGGTCCGGGAAGCTTGCCAAGTGGAACACGTGGGAGAAGAAGAAGAAGGCGGAGGCGAGCAGGTTGGAGGA
GCTCCTGAGGTGGCGCGTGGACGGAGTGAATCGATTCGATGTCCCACCAGCCGCCGCCGCCA------TCGACACCGTAT
GCGTGTGTTCACCGGTTAGAATAACGCAAATTTAGCA-------------------------------------------
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>SNPs
-----S--S------------SS--------------------------------------------S------------
-----S--------------------------------------------------------------------------
---------------------------------------S----------SSS--------------------------S
--------------------------------------------------------S-----------------------
------------------S--S-S-------S--------------S-SSS--S--------SS------S-SS------
-----------------S--S-----------------------------S------S-----SSSS-------------
S-------------S-----------S----------------------------------------------------S
---------S----S----SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S--S----------------------
--------------------------------------------S---------------------S----S--------
-----------S---------S---S----------------------S---------S--------S---------S--
--------------S---S-S-SS----------S-------------------------S-----S--SSSSSSSSSSS
SS---------------------------S--S-----S-----------------------------------------
---------S-------------S--------------------------------S-------S---S-----------
-------------S---------------------------------------------S-------S------------
-------------S---------------------------------------------------------------S--
SS------------------------------------------------------------------------------
S----------------S--------------------------------------------------------------
--------------------------------------------------------------SSSSSS------------
-----------------------------------------S--S----------------------------S------
----S--S--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_698
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--------------------------------------CCCCGTTGTACCAACCAACA----------------------
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>reverse_2255
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--------------GGGTGAAGCGTTTCCCAAAC----------------------------------------------
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