>input_sequence_77537
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-----------------------------------------------------------------------ATGGCCAAG
AAGGGCTCAGGCACTGCCGCCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACACCGTCGTGGCTGCCAGGAC
CATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGCG-CAGGA
GGAGCGGGCGCAGCCGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGG
CGGGGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACCGGTCCGCTCGGCGGCGTCGGGG
-CGGCGTGGGGAGCGTCGGCCCGGTCGGTGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGC
GCCCCGTTCGGCGGGATCGGAGGCGGCTACGGCGGCGGAGGCGCCGGCGGCGCCACGCCTTGAGTACGTCGCAGTGGTCG
AGCTAGCATGGGCGCTCTGGGCTATGCATACATGTACGTGA---------------------------------------
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>chr5B_1_TraesCS5B01G457800
AAAAATAAGGAGTTCATCAGCAACAACAACATCTATTACCTTTGTGAGAGTGGTGTCTTCCAGATTGGTTAGGTGTCACT
TGGGAGCCTCCAAGATGTGGAGTTGAACCAAGGAGTTTGTAAAGGTAAAGAGATCGCCTACTTCATGAAGATTTACCTGA
GTGAGGCTAGTCCTTCATGGGCGTAAGCCATGGTGACATAGATAAGGTTGCATTTGATCTTCCAAACCCCCTCCTTTATG
TTCATATGCAAAGTCTTTACTTTCTGCTGCCTACTAACTTAGACTTGCATGTATAGAGTGTGACAAGACTTGTTAGAATT
GCCAAAACTTGCCTAGAATTAAAATTGGGAAAAGGTCAAGTTTTTACTTGCCAAGTAGTCTAATCCCCT----------C
CCCCCTACTAGACCTACTTGCGATCCTACAAAGTGACGCCGCGCTCTACTCCGGCCGCATCACTCTGAAGCGGTGGTCAC
CTGCATGAATGCACGGTAACCGCTTCTCGTGGAGAGGGT-TTTCGGGCACAAGGGTTTTTGGGTGGGACCGTGGTGTCGG
GCGAGGGCGTGTATGTATCTGCAATCCGGTCGTTGTGTCCGGTTTGTGGAAAAACGGACAACCAGATCGGTCCACAGATC
AATAGGATACTGCATTGGATGGTAAATTTCATCTAAAGACCGATGAGATACCGCGTTGAATGATAAATTACATCCTAACT
ACCCGATCCAGATGATTGCAGACAGTTTAAGGGTCAG-AGATGCACTTAATGGTCACCATGAACAAACAT---CTGCACC
CCACGCCATTCTCGCACTGGCCTCATTTACAGCCTCCCCATCTGCCCCGCTCGACTCTCCATCGCACCATACGTA---CT
CCCCTCCTCCTCCTCGGCCTATTTAAACCGCAAGCTTCACCACAC--CAAATGCACTAGTAGGAACGATCTCACGCGCA-
---ACACAAGAGAGAGCGAATAGAACCGACATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCCAAG
AAGGGCTCAGGCACTGCCGCCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACACCGTCGTGGCTGCCAGGAC
CATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGCG-CAGGA
GGAGCGGGCGCAGCCGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGG
CGGGGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACCGGTCCGCTCGGCGGCGTCGGGG
-CGGCGTGGGGAGCGTCGGCCCGGTCGGTGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGC
GCCCCGTTCGGCGGGATCGGAGGCGGCTACGGCGGCGGAGGCGCCGGCGGCGCCACGCCTTGAGTACGTCGCAGTGGTCG
AGCTAGCATGGGCGCTCTGGGCTATGCATACATGTACGTGACCAGACGCCTCGTTGGTGCATGGTGGATCGCGCTAG---
------TGTATTTCCTTGTACCTAGGGTGTTGCCGTATCATGGCGCAAGGTATACGCGCAGTACTAGTACTACTTAGTTT
GCAGGTGCGTGTACGAGAAGTAGGTGATCCGATGCGAGAAGTTGGAGAGTGTGTGTGTGTGTGTGGCCAGTCAGGGTTTG
TGAGGGTTGTGTGGTTGTGTTTGGTCATTTGAACTACCTGTGTATCCGACTAGCTAGCTGCTGCTAATGGTATGTAGTAC
TATGTATGATTCTCGTGGTGTTCTCAACTCTTTGTGGGTGTGCTCGCGCAGTGTTCCAAACTCCG--GTTCATTTCGTGT
GTGCGCGTCTCTTTTGTCTGCGTGGCAATATAAACATATGGAAAGACAAGGTATGAAGAGAACCAAAGGAAGAAAGAACT
CGGGTTAATTGAAGAGACAAAACATATATGAACCAAAGCATGAAAGCAAACTGTTCTTGTTCATGCTAACAATGCAAAGC
TTGAAATTCGTCCCCATGATGAAAATTGCCCTCCTGTATGTGGACTTTATGAACTGAAGTCGAGTTCGGTTCAATGTATT
CGGGTTGATCTCAGCATTCACATACTCCCTCCGTTCGAAATTACTTGTTACAGAAATGGATGTATCTAGACGTATTTTAG
TTCTAGATACATCCATTTGCGAGACAAGTAATTCCGAACGGAGGGAGTACATTTTTTCTTTTCTTTTGCTGGTAGCATTC
ACGTTTTCTGTTCCAAGAAACAAACATTCATACGATATTGCCGGAGTAGCATTCACGTTTTCTTCTGTTCCAAAAGGAAG
AACATTCACGCTGCTGGCTTTGAGGACTGAGGCTCGGGGGACTGAGCTACATTACTCGTTGATCTACTTCCACAGTTGCA
CGTTATACAAAGCACTAGACGGTTCAATAACGGGCCAGCCGGAGCAAAGGATTTATGCCCACCGGTAAAATATTGTATGA
TTGATATCACAA
>chr5D_1
AAAAATAAGGAGTTCATCAGCAACAACAACATCTATTACCTTTGTGAGAGTGGTGTCTTCCAGATTGGTTAGGTGTCACT
TGGGAGCCTCCAAGATGTGGAGTTGAACCAAGGAGTTTGTAAAGGTAAAGAGATCGCCTACTTCGTGAAGATTTACCTGA
GTGAGGCTAGTCCTTCATGGGCGTAAGCCATGGTGACATAGATAAGGTTGCATTTGATCTTCCAAACCCCCTCCTTTATG
TTCATATGCAAAGTCTTTACTTTCTGCTGCCTACTAACTTAGACTTGCATGTATAG-----GACAAGACTTGTTAGAATT
GCCAAAACTTGCCTAGAACTAAAATTGGGAAAAGGTCAAGTTTTTATTTGCCAAGTAGTCTAATCCCCCACCCCCCCTCC
CCCCCTACTAGACCAACTTGCAATCCTACAAAGTGACGCCGCGCTCTACTCCGGCCGCATCACTCTGAAGCGGTGGTCAC
CTGCATGAATGCACGGTAACCGCTTCTCGTGGAGAGGGTTTTTCGGACAGAAGGGTTTTTGGGTGGGACCGTGGTGTCGG
GCGAGGGCGTGTATGTATCTGCAATCCGGTCGTTGTGTCCGGTTTGTGGAAAAACGGGCAACCAGATCGGTCCACAGATC
AATAGGATACTGCATTGGATGGTAAATTTCATCTAAAGACCGATGAGATACCGCGTTGAATGATAAATTACATCCTAACT
ACCCGATCTAGATGATTGCAGACAGTTTAAGGGTCAGAAGATGCACTTAATGGTCACCATGAACAAACAT---CTGCACC
CCACGCCATTCTCGCACTGGCCTCATTTACAGCCTCCCCATCTGCCCCGCTCGACTCTCCATCGCACCATACGTA---CT
CCCCTCCTCCTCCTCGGCCTATTTAAACCGCAAGCTTCACCACAC--CAAATGCACTAGTAGGAACGATCTCACGCGCA-
---ACACAAGAGAGAGCGAATAGAACCGACATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCC---
AAGGGCTCAGGCACTGCCGCCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACACCGTCGTGGCTGCCAGGAC
CATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGCG-CAGGA
GGAGCGGGCGCAGCCGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGG
CGGGGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACCGGTCCGCTCGGCGGCGTCGGGG
GCGGCGTGGGGAGCGTCGGCCCGGTCGGTGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGC
GCCCCGTTCGGCGGGATCCGAGGCGGCTACGGCGGCGGAGGCGCCGGCGGCGCCACGCCTTGAGTACGTCGCAGTGGTCG
AGCTAGCATGGGCGCTCTGGGCTATGCATACATGTACGTGACCAGACGCCTCGTTGGTGCATGGTGGATCGCGCTAGCTT
TGACTGTGTATTTCCTTGTACCTAGGGTGTTGCCGTATCATGGCGCAAGGTATATGCGCAGTACTAGTACTACTTAGTTC
GCAGGTGCGTGTACGAGAAGTAGGTGATCCGATGCGAGAAGTTGGAGAGTGTGTGTGTGTGTGTGGCCAGTCAGGGTTTG
TGAGGGTTGTGTGGTTGTGTTTGGTCATTTGAACTACCTGTGTATCCGACTAGCTAGCTGCTGCTAATGGTATGTAGTAC
TATGTATGATTCTCGTGGTGTTCTCAACTCTTTGTGGGTGTGCTCGCGCAGTGTTCCAAACTCCG--GTTCATTTCGTGT
GTGCGCGTCTCTTTTGTCTGCGTGGCAATATAAACATATGGAAAGACAAGGTATGAAGAGAACCAAAGGAAGAAAGAACT
CGGGTTAATTGAAGAGACAAAACATATATGAACCAAAGCATGAAAGCGAACTGTTCTTGTTCATGCTAACAATGCAAAGC
TTGAAATTCGTCCCCATGATGAAAATTGCCCTCCTGTATGTGGACTTTATGAACTGAAGTCGAGTTCGGTTCAATGTATT
CGTGTTGATCTCAGCATTCACATACG------------------------------------------------------
---------------------------------------------------TTTTTTCTTTTCTTTTGCTGGTAGCATTC
CCGTTTTCTGTTCCAAGAAACAAACATTCATACGGTATTGCCGGAGTAGCATTCACGTTTTCTTCTGTTCCAAAAGGAAG
AACATTCACGCTGCTGGCTTTGAGGACTGAGGCTC-GGGGACTGAGCTACATTACTCGTTGATCTACTTCCACAGTTGCA
CGTTATACAAAGCACTAGACGGTTCAATAACGGGCCAGCCGGAGCAAAGGATTTATGCCCACCAGTAAAATATTGTATGA
TTGATATCACAA
>chr5D_768
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-----------------------------------------------------------TGAACAAACATTGACTGCAAC
CCACGGTGCTCTCGCAGTGGCCTCATTTACAGCCTCCCCATCTGCCCCGGTCGACTCACC--------GTACGTACTCCC
ATCCTCCTCCTTCTCGGGCTGTTTAAACAGCAACCTACACCACACCGCAAGTGCACCAGTAGCAACGATCTCACGCGCAC
--AACACATGATAGAGCGAGTAGAACCGATATCTGTAGCTAGCTAGC--TAG-AGAGCGGCG-------CCATGGCCAAG
AAGCGGTCGGCCACTGTCGCCTCTC---T---CCTGCTCTGCGTCGCTCTGGCGGGGCACGCCGTCACGGCGGCCAGGAC
CGTGCACGCTGCAGCTGGCGGCGCGGCAGAGACATCGCTTCCGGCCGCGATAGCCGCAGAGAACGGTTCCGGTG-CAGGA
GGAGAGGGCGCAGCGGACGAGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGGGACCTTCCGAGCATGCCGGCCTTGGG
CGACGGCTACGGCGGTGGCTTCGGCAACAACGGAGACGACCTCTTAACCGGCGTCACGGGCCCACTCGGCGGCGGCGGGG
GCGGTGTGGGGAGCGTCGGCTCGGACGGCGGCGTCGGGGGAGCCGGTGGTATCCCGTTTGGAGGGTTCGCCGGTTGCAGC
GCCCTGTTCGGCGGGCTCGGAGGCGGGTAAGGCGGCGGAGGCGCCGGTGGCGTCACGCCTTGAGTACGCCGCGGTGGTCG
AGCTAGCTAGGGCGCTCTGGACCATGCATATATGTACGTGACGAGATTCCGCGCTGGTTCATGGTAGATCGGGCTA----
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>chr5A_768
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-----------------------------------------------------------TGACCAAACATTCACTGCACC
CCACGTTGCTCTCGCACTCGCCTCATTTACACCCTCGCCACCTGCTCCGGTCTCCC---------------CGTCCTACT
CCTCCACTTCTCCTCCACCTATTAAAACAGCTAGCTCCACTACACCGCAAGTGCACCGATAGCAACGATCTCACGCGCAC
--AGCACAAGACAGAGCGAGTAAAACTGAAATTTGTAGTTGGCTAGC--TATAGAGAGTGGAGCCATGACCAGGAACAGG
AAGTGCTCTCGCACTGCAGCCTCCC---TTGCCCTGCTCTGCCTCGCGCTGGCGGCACACGGTGTGGCAGCTGCCAGGAC
CGTGCCTGCTGCAGCTGGCGTCGCGGCGCAGGCCTCGCTTCCGGC------CGCCACAGAGAGCGGAGCCGGTG-CAGGT
GGAGTGGGCGCAGCGGACGCGAAGAACCTGTTCGTGGGCATGGGAGGCATGGGGAACCTGCCGGGCCTCCCGGCCGTCGG
CGGTGGCTACGGCGGGGGCTTCGGCAACAACGGAGCCGGCGTCTCCACCGGTATCACGGGCCCGCTCGGCGGCGTCTTGG
GTGGCGTGCGGAGTGTCAGTTTCCTGGGCAGCGTCGGGGGTGCCGGCGGTATCCCGTGCGGAGGCTTCCGCGGGGGCGGT
GCCCCGTTTGGCGGGCTCGGAGGCGTGTACGGCGGCGGAGGCACCGGCGGTGCCACGCCTTGAGTACGCCGTTGTGGCCG
AGCTAGCTAGGGCACTCTGGGCCATGCATACATGTACGTGACCATCCTCGGCAGTGGTTTATGGTGGATCGCGCTAG---
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>chr5A_818
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--------------------------------CCTCCCCA--TGCCCCGGTCGAGTCTCCGTCCCACCGTACGTACTCCT
CTCCTCCTCCCTCTCGGCCTATTTAAACCGCAAGCATCGGCACGC--CAAGTGCACCAGTAGCAACGATCTCACGCGCAG
AAAACACAAGAGAGAGCGAGTAGAACCGATATCCGTAGCTGGTTTGCTAGACTAGAGCGGCG-------CCATGGCCAAG
AAGGGCTCAGGCACTGCCACCTCTC---T---CCTGCTCTGCCTCGCGCTGGCGGCGCACGCCGTCGGGGCTGCCAGGAC
CATGCCCGCTGCAGCTGGCGGCGTGGCGGAGGCCTCACTTCCGGCCGCCGCCGCCACGGAGAAGGGCGCCGGTG-CAGGA
GGAGCCGGCGCGGCGGACGCGAAGAACCTGTTCGTGGGCGTGGGAGCCATGGGGGACCTTCCGGGCTTCCCCGCCGTCGG
CGGCGGCTACGGCGGTGGCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGCGTCACGGGCCCGCTCGGCGGCGTCGGGG
GCGGCGTGGGGAGCGTCGGCCCGTTCGGCGGCGTCGGGGGAGCCGGCGGCATCCCTTTCGGAGGCTTCGGGGGTGGCAGC
GCCCCGTTCGGCGGGTA---------------------------CGGCGGCGTCACGCCTTGAGTACGCCGCGGTGGCCG
AGCTAGCTTGGGCGCTCTGGGACGTGCATACATGTACGTGACGAAGTGGCGCTCTAGCTCATGGTGGATCGCACTAGCTT
TGACCACTTGTTTCCTTGGACCTAGGGTGTTGTCATGGTATGGCGCAAGGTATATGCGCAGTAG------TACTTAGTTT
TCAGGTCCGTGTACGAGAAGTAGCTGATTCGCTGGGA-----------------GTGTGTGTGTGGCCAGTCAGGGTTTG
TGACTGTTGTGTGGTTGTGTTTGGTCGTGTGAACTACCTGTGTATCCGACTAGCTA---GCTGCTAATGGTATGTAGTAC
---GTGTGATTCTCGTGGTGTCCTCAACTCAACTCGGTGTCCT---CGCAGTGTTCCAAACTCCAGTGTTCATTTCGTGT
GTGCGCGTCTCTTTTGTCTACGTGGCAATATTAACATAGGGAAAGAGGCAAGGT--------------------------
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>chr5D_861
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------------------------------------------------------------------------------CT
CGCCACCTGCCCCTCGGCCTATTTAAACAGCAAGCTCCAC-ACACCGCAAGTGCACCCGTAGCAACGATCTCACGCGCAC
--AACACAAGGAAGAGCGAGTAGAACTGATATTTGTAGTTGGCTACTTATAG-AGAGCAGAC-------CCATGGCCAGG
AAGTGCTCTCGCAATGCAGCCTCCCTTGT---CCTGCTCTGCCTCGCGCTGGCGGCACACGCCGTGGCAGCGGCCAGGAC
CGTGCCAGCTGCAGCTGGCGTCGCGGCGCAGGCCTCACTTCCGGG------CGCCACAGAGAGCGGAGCCGGTG-CAGGA
GGAGTGGGCGCAGTGGACGCGAAGAACCTGTTCGTGGGCATGGGAGGCATGGGGAACCTGCCGGGCCTCCCGGCCGTCGG
CGGTGGCTACGGCGGGGCCTTCGGCAACAACGGAGCCGGCGTCTTCACCGGTATCACGGGCCCGCTCGGCGGCGTCTTGG
GTGGCGTGCGGAGTGTCAGTCTCGTGGGTAGCGTCGGGGGTGCCGGCGGTATCCCGTTCGGGGGCTTCGGTGGGGGCGGT
GCCCCGTTTGGCGGGCTCGGAGGCGGGTACGACGGCGGAGCCGCCGCCGGCGTCACGCCTTGAGTACGCCGTTGTGGCCG
AGCTAGCTAGGGCACTCTGGGCCATGCATACATGTACGCGACCGTCCTCAGCAGTGGTCTATGGTGGATCGCGCTAG---
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>chr5A_1028
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------------------GCCTCGC---T---CCTGCTCTGGTTCGCACTGGCAGCACACGCCGTGGTGGCTGCGAGGAC
CGTGCCCGCTTCAGCTGGCGGCGTGGCGGAGGCCTCACTTCAAGCCGCCGCCACCACGGAGAAGGGCGCAGGTGACAGCA
GGAGCGCGCGTGGCGGACGTGAAGAACCTGTTCGTGGGCGTGGGAGGCATGGGTGACCTGCCGGGCCTCCCGGCCGTCGG
CGGCGGCTACGGCGGGGGCTTCGGCAACAACGGAGCCGGCTTCTTCACCGGCGTTACGGGTCCGCTTGGCGGCGTTGGGG
GCGGCGTGGGGAGCATCACTTGGCTGCATGGCGTGGTGGGAGCTGGCGGTATCTCTATCGGAGGGTTCGCTGGTGGTGGC
ATCCCGTTCGGCGGGCTCGGAGGCAGGCACGGCAGCGGAGGCGCCGGCGCCGTGGCACCTTGAGTACGTCGTCTCGGCCG
AGCTGGCTAGGGCGCTCTGCGACGTGCATATACTTGCGTGACCATATGGCATGCTGAGGCATGGTGGATCG---------
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>SNPs
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----------------------------------------------------------------S---------------
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--------------------------------------------------------SSSSS-------------------
------------------S---------------------------S---------------------S-----------
--------------S------S----------------------------------------------------------
----------------------------------------------S--S------------------------------
---------------------------------------------------------S----------------------
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--------S-----------------------------------------------------------------------
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------------------------------------------------------S-------------------------
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-----------------------------------------------S--------------------------------
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--S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
S---------------------------------S---------------------------------------------
-----------------------------------S--------------------------------------------
---------------------------------------------------------------S----------------
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>forward_618
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--------------------------------------CCGGTTTGTGGAAAAACGGA----------------------
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>reverse_2273
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--------------------------------TCCGAACGGAGGGAGTACAT----------------------------
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