>input_sequence_77530
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--------------------------------------------------ATGAAGTGGTTCAACATGAGCTCGTCCACG
TACAGGTCGCCGGTGTTCATCGGCCTCCTGGTGGTGATGTCCGTGGCCTTGGTGCTCCTTCTGCACCACTGCATCCTCGT
CAGCTGCTGCAACGGCGAGAGGATCCGCAGGCGCAGCCGCCGGCGAGGTGCCACGGCGCGGCAGCATGAACAGCAGCCGG
AAGAGAGCGTGGGCGACCTGAGCTCGTCGTCGCGGGTGCAGCTGGTGGCGAAGCCGGTGGTGTGCCGGTACCGGAAGGAC
GAGGAGTGGAGCGAGCCGACATGCCCGGTGTGCCTTGCGGACTTCGCGGACGGCGAGGCGGTGAGGGTGCTGCCGGAGTG
CCTGCACTACTTCCACGCGGACTGCATCGACACCTGGCTCCGCGCCGGCAACACCAGCTGCCCGATGTGCCGCGCCGAGA
CCACGCCCACGCCATCGCCCAGCCCCGCCGGGTCACTCCACCACCAACTCTCCCTCGACATCTCCCTCGAGGACATCCTA
ATCCGCACGTAG--------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G174400
CCATCCCCGACCTGGACGACGCCGCCAGCCGCCTCGACGGGGGCGGAGAGGGGCTCGTCACCCTGGCGTTCCCTTCCGGC
GCGTGGTCCGGCCGCGTCGTGGCGCGCACCGGCTGCAGCAGCAGCGATGACTACGACTCCTCCTCCCCCTCCTCCTCCTC
GACGGCGGCGGTGGCCAGGTGCGTCACGGGCATGCCGCCGGCGCCGGTGACGGTGGCGCAGGTGAGCGTGCACGGGTCCG
GCGGGCTGGCGGAGTACAGCGTGAGCCTGGTGGACGGGTTCAACCTGCCGGTGATGGTGACGCCGCACGGGTTCGAGCAG
GGCCGGCAGTGCCCGTCCCTCGGCTGCGCCGTGGACCTCGACGTGGACTGCCCCCGCGACGCCAGGGCCCCCGCCGGCGG
GTGCAGGGCCCAGGGTCAGGGGCACTTCTTCAAGGAGAGGTGCCCGGACACTCGGACGACGCCGACGGACGTGGAGGCCA
CGCCACAGCGCTGCCTCCAGCCCGGCGAGCTCAAGATCGTCTTCTGCCCCGATTCTTCCGACTAGTCACTTGCTACCA--
-CACACACTAGGCTAGCTAGACCGGCTGTGTGTCACTCACGATGCCGGTTATATAATAAGCTAAGCGATTGATTGCTGAT
TCGCTAAGCCAGATTCAACCGAATAATATGTTAACTATTCTTCTTCCGCTTGGACTGATCTTGAGCACTTGACCCGGTCT
GATTGATCTCGCCATGTTTAGCATAGAAAAA-CAAGGAAAATAAACCGTAGCAGGCTTAGTTTGTGTTGTTGCTACTAGC
TTCCAAGCACAAGGGAACAGATGCAGGTCGCCATCAGTGGCATCAGCGACGCGCATCGACTATCGACCGTGC---AGCTT
CGTAACCATCGTCGCTCTCGGGTTGTCCGGTAGCTTGCATCTGTCGACCGATTAATGTTCCGTCCATGGCTCATTCCACC
TCGATCGGAGCTTCCTAGCCTAGGTAGTAC---GTAGGTACACACATCACATGAAGTGGTTCAACATGAGCTCGTCCACG
TACAGGTCGCCGGTGTTCATCGGCCTCCTGGTGGTGATGTCCGTGGCCTTGGTGCTCCTTCTGCACCACTGCATCCTCGT
CAGCTGCTGCAACGGCGAGAGGATCCGCAGGCGCAGCCGCCGGCGAGGTGCCACGGCGCGGCAGCATGAACAGCAGCCGG
AAGAGAGCGTGGGCGACCTGAGCTCGTCGTCGCGGGTGCAGCTGGTGGCGAAGCCGGTGGTGTGCCGGTACCGGAAGGAC
GAGGAGTGGAGCGAGCCGACATGCCCGGTGTGCCTTGCGGACTTCGCGGACGGCGAGGCGGTGAGGGTGCTGCCGGAGTG
CCTGCACTACTTCCACGCGGACTGCATCGACACCTGGCTCCGCGCCGGCAACACCAGCTGCCCGATGTGCCGCGCCGAGA
CCACGCCCACGCCATCGCCCAGCCCCGCCGGGTCACTCCACCACCAACTCTCCCTCGACATCTCCCTCGAGGACATCCTA
ATCCGCACGTAGAGATGGACGGCCGGCGGTGAACAGGAGGAAGAAGCAGAGTGTATGTGTATGTACTACATTGCTCTGTT
TCGCTTCTAAATTCTAATCCGCACGTAGAGATGGGCGGCCGGCGGTGAACAGGAGGAAGAAGAGGTAGTGATCGATTCTT
TTGTTAGAATTCGTTGAAGAAATACTGATAGTGTTGTGTGATTGGCACTAACTCTTTATTCGCTCTTAATTAAGAGTAAT
TCTGATATTTGAGAAGTTAATCTGCATATGAGATATTCTTCATTT-----------------------------------
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--------------CCCCCCATGTGAACTCACATTTTATGCTCATTTGATAGTAGTCACTTGGCTGATAGAATTTCAGCT
CAGGATGTTGACAAGCTTATTAGAGACAATGGAAGAGTTACGTAAAGCTGCATGTTCTATGGAACGTAATAGCCTGATGG
T----------------------------TTTCTCATAGAGTTTTACCAGAAATTCTAGAGTTTGATAAAATGGATGCTT
GATGATTTCCATAGAGATAATATCAACATTGCTAGGCTGAACGATGACATTATTACTTTA-TCCCTAAAACAAAAGAAGC
CAAGGAAAAAGGAAATATGAAGACTTATATGTTTACTTAATGTTAGTT--------ATAAAATTTCCACTAAGATTCTCA
TAAACAAACTTAGTGAGGTGGTGGGCTCTTCAATCCCCCCT--------------ATACAAACTGCTTTTACTAAAGACA
TGTATATTATGAAAGATGTCATAATTTTGCATGAGGCTACCGATACTATGCATGTT-AAAAAAACAGAGTACTATTCTTT
TCAAAGTTGACTTGGAGAAAGCATATGATAAAATCAGATGGTCTTTTGTTCCTAAGATGCTCTCCTTGAAAGGATTCCCA
GATAGATGGAATGACTGGATTATTGGGACCATGTTGGAACAGAAGTTAATGACTATGCAAGTCCTTATTTTAATACTTTT
ATTAAAGGATT---------------------------------------------------------------------
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----------------------------------------AAGACATGAAGATTCCATGTCCCCTTTAA-TTTTGATTTA
GAAGCATATGCCCTGCTATTAAT
>chr4D_1
CCATCCCCGACCTGGACGACGCCGCCAGCCGCCTCGACGGGGGCGGAGAGGGGCTCGTCACCCTGTCGTTCCCTTCCGGC
GCGTGGTCCGGCCGCGTCGTGGCGCGCACCGGCTGCAGCAGCAGCGATGACTACGACTCCTCCTCCCCCTCCTCCTCCTC
GCCGGCGGCGGTGACCAGGTGCGACACGGGCATGCCGCCGGCGCCGGTGACGGTGGCGCAGGTGAGCGTGCACGGGTCCG
GCGGGCTGGCGGAGTACAGCGTGAGCCTGGTGGACGGGTTCAACCTGCCGGTGATGGTGACGCCGCACGGGTTCGAGCAG
GGCCGGCAGTGCCCGTCCCTCGGCTGCGCGGTGGACCTGGACGTGGACTGCCCCCGCGACGCCAGGGCCCCCGCCGGCGG
GTGCAGGGCCCAGGGCCAGGGGCACTTCTTCAAGGAGAGGTGCCCGGACACTCGGACGACGCCGACGGACGTGGAGGCCA
CGCCGCAGCGCTGCATCCAGCCCGGCGAGCTCAAGATCGTCTTCTGCCCCGATTCTTCCTACTAGTCACTCGCTACCACA
CCACACACTAGGCTAGCTAGACCGGCTGTGTGTCACTCACGATGCCGGTTATATAATAAGCTTAGCGATTGATTGCTGAT
TCGCTAAGCCAGATTCAACCGAATAATATGTTAACTATTCATCTTCAGCTTGGACTGATCTTGAGCACTTGACCCGGTCT
GATTGATCTCGCCATGTTTAGCAACAAAAAA-CAAGGAAAATA------AGCAGGCTTAGTTTGTGTTGTTGCTACTAGC
TTCCAAGCACAAGGGAACAGATGCAGGTCGCCATCAGTGGCATCAGCGACGCGCATCGACAATCGACCATGCAGCAGCTT
CGTAACCATCGTCGCTCTCGGGTTGTCCGGTAGCTTGCATCTGTCGACCGATTAATGTTCCGTCCATGGCTCATTTCACC
TCGATCGGAGCTTCCTAGCCTAGGTAGTACTACGTAGGTACACACATCACATGAAGTGGTTCAACATGAGCTCGTCCACG
TACAGGTCGCCGGTGTTCATCGGCCTCCTGGTGGTGATGTCCGTGGCCTTGGTGCTCCTTCTGCACCACTGCATCCTCGT
CAGCTGCTGCAACGGCGAGAGAATCCGCAGGGGGAGCCGACGGCGAGGTGCCACGGCGCGGCAGCAAGAAGAGCAGCCGG
AAGAGAGCGTGGGCGACCTGAGCTCGTCGTCGCGGGTGCAGCTGGTGGCGAAGCCGGTGGTGTGCCGGTACCGGAAGGAC
GAGGAGTGGAGCGAGCCGACGTGCCCGGTGTGCCTTGCGGACTTCGCGGACGGCGAGGCGGTGAGGGTGCTGCCGGAGTG
CCTGCACTACTTCCACGAGGACTGCATCGACACCTGGCTCCGCGCAGGCAACACCAGCTGCCCGATGTGCCGCGCCGAGA
CCACGCCCACGCCGTCGCCCAGCCCCGCCGGGTCACTCCACCACCAGCTCTCCCTCGACATCTCCCTCGAGGACATCCTA
ATCCGCACGTAGAGATGGACGGCCGGCGGTGAACAGGAGGAAGAAGCAGAGTGTATGTGTATCTACTACATTGCTCTGTT
TCGCTTCTAAATTCTAATCCGCACGTAGAGATGGGCGGCCGGCGGTGAACAGGAGGAAGAAGAGGTAGTGATCGATTCTT
TTGTTAGAATTCGTTGAAGAAATACTGATAGTGTTGTGTTATTGGCACTAACTCTTTATTCGCTCTTAATTAAGAGTAAT
TCTGATATTTGGGAAGTTAATCTGCATATGAGATATTCTTCATTT-----------------------------------
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--------------CCCCC-ATGTGAACTCACATTTTATGCTCATTTGATAGTAGTCACTTGGCTGATAGAATTTCAGCT
CAGGATGTGGACAAGCTTATTAGAGACAATGGAAGAGTTATATAAAGCTGCATTTTCTATGGAACATAGTAGCC------
---------------------------------------AGTTTTACCAGAAATTCTAGAGTTTGATAAAATGGATGCTT
GATGATTTCCATAGAGATAATATCAACATTGCTAGGCTGAATTATGACATTATTACTTTAGTCCCTAAAACAAAAGAAGG
C-------AAGGAAATATGAAGACTTATATGTTTACTTAATGTTAGTTATAAACTTATAAAATTTCCACTAAGATTCTCA
TAAACAAACTTAGTGAGGTGGTGGGCTCTTCGATCCCCCCCCTCCCCCCCCCCACATACAAACTGCTTTCACTAAAGACA
TTTATATTAGGGAAGATGTCATAATTTTGCATGAGGCTACCGATACTATGCATGTTAAAAAAACAGGAGTACTATTCTTT
TCAAAGTTAACTTAGAGAAAGCATATGATAAAATCAGATGGTCTTTTGTTCCTAAGATGCTCTCCTTGAAAGGATTCCCG
GATAGATGAAATGACTGGATTATTGGGACCATGTTGGAATAGAAGTTAATTACTATGTAAGTCCTTATTTTAATACTTTT
ATTAAAGGATACCGAAAAAGGCTTTCGCCCCGCTTTATAGATAAAGCAAACCGCCCGAACCAAACATCCAACAGAGTTCA
CACACACACCCACACACACCCACACACACACACTCAAAGTCACAGCCGCACACACCGCACGGAACCAGTAGGGTTAATGC
TGAGGGCACAGCTCAAGAAGCCCTAAGAACAAAAGGACACACAAAAAGACCGCCACGGACGAGTCCAGCCTAATCAGGTT
CCGGCGGCGGTGGCGGAAGCGGGGGCGCCATGCGGAAGGCCATCGATCGAAGGTCGGTGAGGAGGGTGTCGATGACGCTC
CGGTCCTGGGGGCGGCTAAGCGGCCGCCAAAGCTGCAAATAGCCACACATTTTGAAGATCGCGTCAGTCGCACGTCGCAG
AGGCACTTCCTGAATAACGAGCTTGTTGCGAATATTCCAAAGCGTCCATGCAAGGATCCCAATGCACAGCCATCTAATAT
GGCGGTAACGCGGGGAGGAGGCATGGATCTCCGCGAGTAGGTCAGGGAAGTTGGAATTGCACCACTGTCCGCCGACCGTT
TCACGGAAGCACGACCACAGGAACTGGGCAGTGGAGCAGTTGAAGAAAATGTGGTTCGAATCCTCCACCGTGGCGCACAG
GGGACACATCCGTCCCCAGGGCCATTGCGCTTGCGGACTTCCACCCCAGAGGGGAGACGTCCCTGGATCCACTGCCAGAG
GAATATCCGGATCTTGAGGGAGAGACGAATGTCCCAGATTAGGCTAAAGGGCTCAGGGGCCAGCGAAGGGGCGATGGCAG
CATACAAAGACTTCATGGAGAAGCTTCCCGAGGGCTCCAGATGCCATGCCATGGAGTCGGTGGCGCCCTCTAGATGCATT
GGCAAGAGAGCGATGTCCTGTAGAAGGGCGTCCCACGCGTCAACCTCCTGGGGGCCAAAGGAGCGCCGAAAGGCGAGGCG
CCCTAGGTCCATAAGGGCCGTTTCGACGGAAATTCGGGGGTCTGCCGCAATGGCAAATAAGCCCGGGAAGCGGGCGGCCA
GAGGGGAATCCCCAAGCCAGCGGTCGAACCAAAACAGGGTCGAGGACCCGGAACCCACCGAGATGGAAGTGCCAATCCGG
AGCACGGGGAGGAGCTGAATCACAGCCTGCCAGAACTGGGATCCCCCAAAGCGCTGGCAGAAAGCAAGAGGTTGTCCTCA
GAGGTACTTATTCTGAATGATGGTAAGCCAGAGGCCGCCCTCCCCGTTGGCAATACGCCATAGCCATCGGGTCAGGAGAG
CAATGTTCATGCGACGGGAGGACAAGGTCCCCAGACCTCCCTGGTCCTTGGGTTTGCAAATGTCCGGCCAGCTCACCATA
TGGTATTTTTGCTTGTCCCCCTCGCCAGCCCAGAAAAATCTGGACTGATATTTGGCCACCTCCTGGTGAAGCGTCTCATG
GAGTCTATAGAAGCTCATGAGGAACCAGAGGAGGCTAGCCAGCGAGGAGTTGATGAGGATTACCCGAGCCGCCTTCGATA
GCCACCGGCCCTTCCAGGGCTCGACCCGGTGTTGCATCCGGGTCACGGAAGGGCGGAGGTCCGCTACGGTGAGGCGTGAG
TCACTAATGGGGATCCCCAGATAGGTTGTGGGGAAAGAACCCAGGCGGCAATTAAGCCGGTCCGCAATGCCCTGGGCCTC
TACCGGTGGGTATCCCAGCACCATCACTTCACTCTTATCGAAGGCATGAAGATTCCATGTCCCCTTTAATTTTTGATTTA
GAAGCATATGCCCTGCTATTAAT
>chr4B_1
CCATCCCCGACCCGAACGACGCCGCCAGCCGCCTCGACGGGGGCGGCGAGGGGCTCGTCACCCTGTCGTTCCCCTCCGGC
ACGTGGTCCGGTCGCGTCGTGGCGCGCACCGGCTGCAGCAGCAGCGATGACTACGACTCCCCCTCCCCCTCCTCCTCCTC
GCCGGCGGCGGTGACCAGGTGCGACACGGGCGTGCCGCCGGCGCCGGTGACGGTGGCGCAGGTGAGCGTGCACGGGTCCG
GCGGGCTGGCGGAGTACAGCGTGAGCCTGGTGGACGGGTTCAACCTGCCCGTGATGGTGACGCCGCACGGGTTCGAGCAG
GGCCGGCAGTGCCCGTCCCTCGGCTGCGCGGTGGACCTGGACGTGGACTGTCCCCGCGACGCCAGGGCCCCCGCCGGCGG
GTGCAGGGCCCAGGGCCAGGGGCACTTCTTCAAGGAGAGGTGCCCGGACACTCGGACGACGCCGACGGACGTGGAGGCCA
CGCCGCAGCGCTGCATCCAGCCCGGCGAGCTCAAGATCGTCTTCTGCCCGGATTCTTCCTACTAGTCACTTGCTACCACA
C-----ACTAGGCTAGCTAGACCGGCTCTGTGTCACTCACGATGCCGGCTATATAATAAGCTTAGCGATTGATTGCTGAT
TCGCTAAGCCAGATTCAACCGAATAATATGTTAACTATTCATCTTCCGCTTGGACTGATCTTGAGCACTTGACCCAGTCT
GATTGATCTCGCCATGTTTAGCAACAAAAAAACAAAGAAAATAAACAGTAGCAGGCTTAGTTTGTGTTGTTTCTACTAGC
TTCCAAGCACAAGGGAACAGATGCAGGTCGCCATCAGTGGCATCAGCGACGCGCATCGACTATCGACGATGC---AGCTT
CGTAACCATCGTCGCTCTCGGGTTGTCCGGTAGCTTGCATCTATCGACCGATTAATGTTCCATCCATGGCTCATTCCACC
TCGATCGGAGCTTCCTAGCCTAGGTAGTAC---GTAGGTACACACATCACATGAAGTGGTTCAACATGAGCTCGTCCATG
TACAGGTCGCCGGTGTTCATCGGCCTCCTGGTGGTGATGTCCGTGGCCTTGGTGCTCCTTCTGCACCACTGCATCCTCGT
CAGCTGCTGCAACGGCGAGAGGGTCCGCGGGCGCAGCCGCCGGCGAGGTGCCACGGCGCGGCAGCAAGAACAGCAGCCGG
AAGAGAGCGTGGGCGACCTGAGCTCGTCGTCGCGGGTGCAGCTGGTGGCGAAGCCGGTGGTGTGCCGGTACCGGAAGGAC
GAGGAGTGGAGCGAGCCGACGTGCCCGGTGTGCCTTGCGGACTTCGCGGACGGCGAGGCGGTGAGGGTGCTGCCGGAGTG
CCTGCACTACTTCCACGCGGACTGCATCGACACCTGGCTCCGCGCCCGCAACACCAGCTGCCCGATGTGCCGCGCCGAGA
CCACGCCCACGCCGTCGCCCAGCCCCGCCGGGTCACTCCACCACCAGCTCTCCCTCGACATCTCCCTCGAGGACATCCTA
ATCCGCACGTAGAGATGGACGGCCGGCGGTGAACAGGAGGAAGAAGCAGAGTGTATGTGGATGTACTACATTGCTCTGTT
TTGCTTCTAAATTCTAATCCGCTCGTAGAGATGGGCGGCCGGCGGTGAACAGGAGGAAGAAGAGGTAGTGATCGATTCTT
TTGTTAGAATTCGTTGAAGAAATATTGATAGTGTTGTGTGATTGGCACTAACTCTTTATTCGCTCTTAATTAAGAGTAAT
TCTGATATTTGAGAAGTTAATCTGCATATGAGATATTCTTCATCCCCCCATGTGAACTCTCATTCTATGCTCATCTGATA
GTAGTCACTTGGCTGATAGAAAATCAGCTCATGATGTTGACAAGCTTATTAGAGACAATGGAAGAGTTATGTAAAGCTGC
ATTTTCTATGGAACATAATAGCCCCTTTTTTTGCCGGTGGAACATAATAGCCTGATATTTGAGAAGTTAATCTGCATATG
AGGTATTCTTCATCCCCCC-ATGTGAACTCTCATTCTATGCTCATCTGATAGTAGTCACTTGGCTGATAGAAAATCAGCT
CATGATGTTGACAAGCTTATTAGAGACAATGGAAGAGTTATGTAAAGCTGCATTTTCTATGGAACATAATAGCCCTTTTT
TTTGCCGGTGGAACATAATAGCCTGATGGTTTCTCATAGAGTTTTACCAGAAAATCTAGAGTTTGATAAAATGGATGCTT
GATGATTTCCATAGAGATAATATCAACATTGTTAGGCT-AATGATGACATTATTACTTTA--------------------
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>SNPs
-----------------------------------------------------------------S--------------
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-S-----------S---------S--------------------------------------------------------
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-----------------------------S--------S-----------------------------------------
---------------S----------------------------------------------------------------
----S---------S--------------------------------------------S--------------------
--------------------------------------------------------------S-----------------
----------------------------------------S---------------------------------------
-----------------------SSS--------------------S---------------------------------
--------------------------------------------------------------------S-----------
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------------------------------------------------------------------S-------------
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--------------------S-----------------------------------------------------------
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-------------S--------------------------------S---------------------------------
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-------------------S------------------------------------------------------------
----------------------------------------S------------S-----------S--------SSS-SS
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-----------------------------------------S-------------------------------------S
-SSSSSSS------------------------------------------------------------------------
-------------------------------S--------S----------------------------S----------
-S-------S-S---------------------------------------------------SSS--------------
--------S----S-----------------------------------------------------------------S
--------S------------------------------S----------S------S----------------------
----------S---------------------------------------------------------------------
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>forward_540
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----------------------------------------CTTCTGCCCCGATTCTTCCG--------------------
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>reverse_1487
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----------------------------------------------ACTCTCCCTCGACATCTCCC--------------
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>forward_744
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---TGATCTCGCCATGTTTAGCAT--------------------------------------------------------
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>reverse_2121
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----------------------------------------CGTAAAGCTGCATGTTCTATGGA-----------------
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