>input_sequence_77526
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---------------------------------------------------------------------ATGGATCCGCC
GCACCCTCCGCACCACCACC------------GGCTCCACCTCCGCCTCGACCCCGGCCACCACCACCGCATCCACGTCC
ACCTCCGCCACCACGCCGCCCACCTCCTCCCCGCCGCCGCTCCCTGTGCCCATCACCACCACCACCACACATCGGTTCCT
CTTCCTCGTCCCCACCCGCTTCCCCACCCACCGGCCGCGGCGGAAGGACCACTCCCCGGGCCGCAGGGAGAGGCGGCGAG
GGACGCGGAGGAGCCGGCGCCGCAGGCGGAGCGAGGAGAGGAAGTTTACCTCGGGCAGGAAG------GGTGGGCAGAGG
AGGAGGAGGAGGAACCGGTGTTCGTCCTGACGGAGGAGTGGGCCGAGTTCTTCGCCAAGGCCGACGCCAAGAGGAGGCTG
GGTAAGCCGCCTTG----------------CTCTCTCCCTCGCTAATTTCTCCCCAATCCGTCATGCTTGTTCGATA---
-------ACTTTTGTGTCTTCTGCAACTCTGTTGGTTCTGCAGCCAAGCAGCAGAGGAAGAACCGGAAGAAATAG-----
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>chr3D_1_TraesCS3D01G417900
GGTTGACGAGCCTGATGGTGACATTGTCTTCACTCGTGCAATTGCATCACAAAACTTCATGACTGAGTCAAAGAT-GGTG
TACCACCGATGATTCACGTGCAAGTTGTAGGGTGTGA-TTTTTTTCCTCATGAAACAAAGCATGCATGTTTTGCCAAAAG
GTCA-AGTCCCCTTCCCTTACGCCTACAAAGCCCGTAGATACGAGGTTCCACGCACGCAAACAACTCATCCTTCCCGAGT
ATCCCAGCGTCATTTTACTTTTGAAACAACACGAAAGTCAACAAAAAAGCTCAATGACATTTGACCAAACACCTGTCGGG
TGTGGTGTATGTCATGAACGACGTCAGTAGAGGGACGAAGGGTACCTATCCGCGGACTGATTTTGGGTGGACAGCGGCAT
AGTCCAGGCGGGTAGGCGTGTAGGTGGGGGCTGCAAACGTCCGAGAATGCCTGGTCAGAGGCCAGGGAGGTACATATGCG
TCGGCAGATGAGGAGGGTGCATATGCGAAGTAAGGGAACTCATGAACGGAGTGGAAGAACAATGGGACGGGGAAGAGATT
TGAGTGGGTCAAGGATGTCAGAGTCCTACGTGACGGCGGTCCAGATGGGTACCGTGTTGGATGGCAAATTGCAACCGAAC
AGCTCGATCTGAACAGTTGTATGTGTTTTGAGGGCCCGCTTTAAAGATGCATTAAACACTGATATATGTTAC--------
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---------TTAAAAGAAATTCAGGTGGACATTATAAAGTTGAAGCCAAAAAAAAGACTGACAAAAGCCAGAATCAAACA
TCTGAGGCCATCTGCGTCACTCGCGAACTGATGGCGAAAATTTCGAATTCATCTGGATTTTCTGTGATTTTAGAGCGAGG
CCCC-AAAGAGTGCGACAGACAGAGTAGCGCACGCGCGTGCTCTGACGTTCTGACGAAGCTGTAGTGTAAACCCTACCTA
TACTCAGCAGTA----GCGCGGACGTCGCAGACAGAGAGGAGGCTCGAGAAACA----GAGCAGACGCCATGGATCCGCC
GCACCCTCCGCACCACCACC------------GGCTCCACCTCCGCCTCGACCCCGGCCACCACCACCGCATCCACGTCC
ACCTCCGCCACCACGCCGCCCACCTCCTCCCCGCCGCCGCTCCCTGTGCCCATCACCACCACCACCACACATCGGTTCCT
CTTCCTCGTCCCCACCCGCTTCCCCACCCACCGGCCGCGGCGGAAGGACCACTCCCCGGGCCGCAGGGAGAGGCGGCGAG
GGACGCGGAGGAGCCGGCGCCGCAGGCGGAGCGAGGAGAGGAAGTTTACCTCGGGCAGGAAG------GGTGGGCAGAGG
AGGAGGAGGAGGAACCGGTGTTCGTCCTGACGGAGGAGTGGGCCGAGTTCTTCGCCAAGGCCGACGCCAAGAGGAGGCTG
GGTAAGCCGCCTTG----------------CTCTCTCCCTCGCTAATTTCTCCCCAATCCGTCATGCTTGTTCGATA---
-------ACTTTTGTGTCTTCTGCAACTCTGTTGGTTCTGCAGCCAAGCAGCAGAGGAAGAACCGGAAGAAATAGGAGCG
CCGCGGCTCAAGCGACGATGGAGTTGGAGATGCAGACCGGACAGGGGCCCGGCTTA--CCAGAACTTTTGATGCTTCGGA
TTTTGTTTTACGAGGGAAGGCATTTTGCGAGAGGAGATGACATTATTCAAAATACTTCTGGCTCTTGATCAGCTCAGCGG
GCAGTATTCGCAGCATACCTGATGCTCCGCGTTGAGAAATTCTGTTTCGAGAGGGAGTTTGGTTTTTGCCTTTTAAGAAT
ACGCCAAAACGGAATTTTATATCCGAATAGTAATAATCATAAAGGAAAACAGTGTTTTTGCGTGTAATAACTCTAGTTTG
GCAGCAAAGTTTTTTCTAAACTGTGGTAATTGAAAACCACAGTATTACTCTGGGTAGGCAAAGAATACTACGGTTTTCTA
AAACCAATGTTTTTCTCAGTTTTACATGTGTTTGGTTGCTGCTGTTTAACCAAAGTTTTGACTAAGTATTTTAGCGTGGG
TGACTGAGTAATTAGCG-CTGCTAACGGCTGCCGGCTGCATGCAGCTGTCATGCACACATAATACCATCCTAGGATCAGT
CAGCTAGATTGAAGAAATGCCATCCTAGGAGTAGTCAAC---TAGATTGAAGTAATACAATCCTAGGAGCGTGTTGCCAT
TATATGTCTATAT-------------------------------------------------------------------
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----------------ACGTTCATGTACTTCGAGCCGGTCCTAAATTCTTTGTGCGCGTACATGCGTCATTTATACTGAA
TCGGCTAGCTAGCTACTCCCTCCGTTCCGAAATATTTGTTTTTCTAGTCATTTCAAATGGACTACCACATACTGATGTAT
GTAGACATATTTTAAAGTGTAGATTCACTTATTTTGCTCTGTATGTAGTCATTTGTTGAAATATCTATAAAGACAAATAT
TTAGGAACGGAGGGAGTAGTATATATAACCTGCTGCTTATGAGTGTTCTCCAAAAGGATCAATCAATCTAATCTGTGCGC
TACTCGCCGGAAATACATAGGCAGCCAAGGACTCGAGAAATAGC
>chr3B_1
GGTTGACGAGCCCGATGGCCACATTGTTTTCACTCGTGCGATCGCATCACAAAACTTCATGACTGAGTTAAAAGACGGTG
TACCACCGATGAATGACATGCAAGTTGTAGGGCGTGATTTTTTTTTCTCGTGAAACAAAGCATGCACGTTTTGCCAAAAA
GGTCGAGTCCCCTTCCCTTATGCCTACAAAGCCCGTAGATACGACCTTCCACGCACGCAAACAACTCATCCTTCCCGAGT
ATCCCGGCGTCATTTTACTTCTGAAACAACAAG------------AAAGCTCAATGACATTTGACTGAACGGGCGTGATG
TCTT-------TCATGAACGATGTCAGTAGAGGGATGAAGGGTGCCTGTCTGCGGACGGATTCTGGGTGGACAACGTCAT
AGTCCAGGCGGGTATGCGTGAAGGTGGGGGCTGCAAACGTCTGAGGCTGCCTGGTTAGATGCCGGGGAGGTACATCTGCG
GCGGCGGATGAGGGGGGTGCATATGCGAAGCAAGGAAACTCATGAACGGAGTGAATGAACAATGGAACGGGGAAAAGATT
TGAGTGGGTG-----------------------------------TGAGTACCGCGTTGGATGACAAATTGCGACCGGAT
AGCTCGATCTGAACAGTTGTATGTGTTTTGAGGGTTTGCCTTAAAGATGCCCTAAAATGTTATTAAAAAAGGAGCCTGTC
TAGGACACATCTAGATGTGACATAATTATGTCACATCTAAACTGATGTTCATTTTGTTTGTGGTCTATTTTTTTTCCTAG
TTTTTTTGTTTCTTGTTGCGGCATTATATATTTGTGAAAGTTTAGATGTGACATTCTTAAAAAAATCTAGATGTGAATTA
GACATATTGTTAAAAAAAATTCAGGTGGACATTATGAAGTTGAAGCCACAAAAAAGACTGACAAAA-CCAGAACCAATCA
TCTGAGGCCATCTGCGTCACTGGCGAACTGATGGCGAAAATTTCGAATTCATCTGGAATTTCTGTGATTTTAGAGCGAGG
CCCCGAAAGAGTGCGACAGACAGAGTAGCGCACGGGCGTGCACCGACGTTCTGATGAAGCCGTAGTGTAAACCCTACATA
TACTCGGCACAGTAGCGCGCTGCCGTCGCAGACAGAGAGCAGTCTCGAGAAACA----GAGCAGACGCCATGGATCCGCC
GCACCCTCCACACCACCACC---ACCACCACAGGCTCCACCTCCGCCTCGACCCCGGCCACCACCACCGCATCCACATCC
ACCTCCGCCACCACGCCGCCCACCTCCTCCCCGCCGCCGCTCCCTGTGCC---CACCACCACCACCACGCATCGGTTCCT
CTTCCTCC------------TCCCCACCCGCCGACCGCGGCGGAAGGACCCCTCGCGGGGCCGCAGGGAGAGGCGGCGAG
GGACGCGGAGGAGCCGGCGCCGCAGGCGGAGCGAGGAGAGGAAGTTTACCTCGGGCAAGAAG------GGTGGGAAGAGG
AGGAGGAG------CCGGTGTTCGTCCTGACGGAGGAGTGGGCCGAGTTCTTCGCCAAGGCCGACGCCAAGAGGAGGCTG
GGTAAGCCGCCTCGTTCTC------------------CCTCGCTAATTCCTCCCCATTCCACGATGCCTGTTCGATA---
-------ACTTTTGTGTCTTCTGCAACTCTGTTCGCTCTGCAGCCAAGCAGCAGAAGAAGAACCGGAAGAAATAGGAGCG
CCGCGGCTCAAGCGACGAC------GGAGATGCAGACCGGACAGGGGCCCGGCTTATACCACAGCTTATGATGCTCCGGA
TTTT-TTTTACGAGGGAAGACATTTTGCGAGAGGAGATGACA--------------------------------------
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>chr3A_911
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---------------------------------------------------TGACGAAGCTGTAGCGTAAACCCTACATA
TACTCGGCGGTA----GCACTGCCGTCGCAAACAGAGCGCAGGCTCGAGGAACAGACGGAGCAGACGCCATGGATCCGCC
GCACCCTCCACACCACCACCACCACCACCACCGGCTCCACCTCCGCCTCGACCCCGGCCACCACCACCGCATCCACATCC
ACCTCCGCCACCACGCCGCCCACCTCCTGCCCGCCGCCGCTCCCTGTGCC---CACCACCACCACCACACATCGGTTCCT
CTTCCTCCTCCCCACACGCTTCCCCACCCGCCGACCGCGGCGGAAGGACCACTCCCCGGGCCGCAGGGAGAGGCGGCGGG
GGACGCGGATGAGCCGGCGCCGCAGGCGGAGCGAGGAGAGGAAGTTTACCTCGGGCAGGAAGAAGAGTGGGGGGAGGAGG
AGGAGGAG------CCGGTGTTCGTTCTGACGGAGGAGTGGGCCGAGTTCTTCGCCAAGGCCGACGCCAAGAGGAGGCTG
GGTAAGCCGCCTTGTTCTCTCTCTCTCTCTCTCTCTCTCTCGCTAATTTCTCCCCAGCCCGTGATGCTTGTTGGATGTCT
CGGCGTGACTTCTGTGTCTTCTGCAACTCTGTTCGCTCTGCAGCCAAGCAGCAGAGGAAGAACCGGAAGAAATAGGAGCG
CCGCGGCTCAAGCGACGAC------GGAGATGCAGACCGGACAGGGGCCCGGCTTA--CCAGAACTTTTGATGCTTCGGA
TTTTGTTTTACGAGGGAAGGCATTTTGCGAGAGGAGATGAC--------------TTCTGGTTCTTGATCAGCTCAGCGG
GCAGTATTCACAGCATACCTGATGCTCTGCGTTGAGAACTTTTGTTTCGAGACGGAGCTTGGTTTTTGCCTTTTAAGAGG
GCACCAGAACGGAATTTTATATCCGGTTC-----AATCATAAAGGAAAACAGTATTT-----------------------
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>chr1D_1838
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------------------------------------------------------------------------CTAGTTTG
GCAGCAAAGTTTTTTCTAAACTGTGGTAATTGAAAACCACAGTATTACTCTGGGTGGGCAAAGAATACTACCGTTTTCTA
AAACCAATGTTTTTCTCAGTTTTACATGTATTTGGTTGCTGCTGTTTAACCAAAGTTTTGACTAAGTATTTTAGCGTGGG
TGACTGAGTAATTAGCG-CTGCTAACGGCTGTCGGCTGCATGCAGCTGCCATGCACACATAATACCATCCTAGGATCAGT
CAGCTAGATTGAAGAAATGCCATCCTAGGAGTAGTCAAC---TTGATTGAAGTAATACAATCCTAGGAGCGTGTTGCCAT
TATATGTCTATATACTTGCATGTACTTACTGAAAAAGGCTTTCTTCCCGCTTTATATGTAAAGCAAAGATCCACAGTGTC
CGGTACAACCGCACTCACCCACCACAAACAC--ACACACACCCAAGGCAGGATACATAGGCGCTGAGCGCAGC-------
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----------------------------------------------ACACACACCCTAGCACTACAAGAGCCGTCGGGGG
CATCATCCGAAGAAGTGAAGCCGCATATGACGAACCGTGGGCTCCAAGGCGGTGCCTTCAGAAAGGATACGGCACCGGAG
CGTCGCCACCGCCCGATCCGAGGATCAGAGTTTCCCCTGGAGCACCACGACGGACAGTGATAGCCGCGACGACGCCTTCA
AGAAGGGAGCGATCTTCGCCGTCGCCAGTCCGTCCGAAGATAGAGTAGGTTTTCACCCCGGCCAACATTCACCGCTACCG
AATGCCACACCCCGGCTACCACGCCACCCACACGGCCGTGGCGGCCGGGCAGCACCGAGGCACGAGCTCTGCCCATGAGC
ACCGCGCCACCACCACCAGGGCCGCCGCCCCGGAATCCAAGACCTTGACACCAAGTCCCCCGAGCCCCACCGCTACCCCC
ACTGCAGAGACGGGCGGAAAGGATCCGCCTTTCACACCCCTGACCGGTCCCAACGCCGAGACCCAATAGGCCGGCCACAA
CAAGCCTCCATCGAGCCGTCCTGCTACACCGGGCACAAGACGAGCGCAGTCCTGCCGCCTGGCGCGAGACGGGCCGGCCC
TGCTGCCGGGCGCGAGACGTGCATGTACTTCGAGCCGGTCCTAAATTCTTTGTGCGTGTACATGCGCCATTTATACTGAA
TCGGCTAGCTAG--------------------------------------------------------------------
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---------------GTAGTATATATAACCTGCTGCTTATGAGTGTTCTCCAAAAGGATCAATCAATCTAATCTGTGCAC
TACTCGCCGGAAATACATAGGCAGCCAAGGACTCGAGAAATAGC
>chr1B_1838
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------------------------------------------------------------------------CTAGTTTG
GCAGCAAAGTATTTTCTAAACTGTGGTAATTGAAAACCACAATATTACTCTGGGTGGGCAAAGAATACTACGGTTTTCTA
AAACCAATGTTTTTCTCAGTTTTACATGTGTTTGGTTGCTGTTATTTAACCAAAGTTTTGACTAAGTATTTTAGCGTGGG
TGACTGAGTAGTTAGCG-CTGCTAACGGCTGCCGGCTGCATGCAGCTGCCATGCACACATAATACCATTCTAGGATCAGT
CAGCTAGATTGAAGAAATGCCATCCTAGGAGTAGTCAAC---TGGATTGAAGTAATACAATCCTAGGAGCGTGTTGCCAT
TATATGTCTATATACTTGCATGTACTTATCGAAAAAGGCTTTCGCCCCGCTTTATATATAAAGCAAAGATTCACAGTGTC
CGGTACAACTGCACTTACCCACCACAAACACACACACACATCCAAGACAGGATACATAGGCGCTGATGAAGCCATGTACC
TAGGGTAGGGTCATGGACCTATCCAAGATACCCTCCCCAAGGACATCTCTAGAAGAAACTACCTTTCAGTCGACCTGGAA
GGATTCCACTCGACAGACTCGAAGACACTCGACCATGAAGCCACTCACTCGACCGCCAGGAGATCTAGAGTCACTCTGCA
CACAAACGGTCTGTTATTAAGTAGTCTTTATGGTCATGATAGCACTTTATGTAGGGCGTTACCAGTAACGCCATGCCTTA
ATGTACTTTAAACCCCGCATAACTGAGGGCCGGAGGGGTCTGGCAGATTCTATATAAGCCACCCCCCTCCTCAGTGTAAA
GGGTTTGCACCCCTGTAACTCATACGCATATAATCCAGTCGACCGCCTCCGGGCTCCGAGATGTAGGGCTGTTACTTCCT
CCGAGAGGGGCCTGAACTCATAAATCCCTTGCGTATACAACTACTCCATAGCTAGGATCTTGCCTCTCCATACCTACCCC
CCTTCTACTGTCAGACTTAGAACCACGACAGGCGCTGAACGCAGCAACACACACCCTAGCACTACAAGAGCCGCCGGGGG
CATCATCCGAAGAAGTGAAGCCGCATATGATGAAACGTGGGCTCCAAGGTGGTGCCTTCAGAAAGGATACGACACCGGAG
CGTCGCCACCGCCCGATCCGAGGATCAGAGTTTCCCCTGGAGCACCACGACCGACAGTGATAGCCGCGATGACGCCTTCA
AGAAGGGAGCGATCTTCGCCGTCGCCAGTCCGTCCGAAGATAGAGTAGGTTTTCACCCCGGCCAACATTCACCGCTACCG
AACGCCACACCCCGGCTACCACGCCGCCCACACGGCCGTGGCAGCCGGGCAACACCGAGGCACGAGCTCTGCCCATGAGC
ACCGCGCCACCACCCCCAGGGCCGCCGCCTCGGAATCCAAGACCTTGACACCAAGTCCCCCGAGCCCCACCGCTACCCCC
ACTGCAGAGACGGGCGGAAAGGATCCGCCTTTCACACCCCTGGCCGGTCCCAACGCCGAGACCCAATGGGTTGGCCACAA
CAAGCCTCCATCGAGCCGTCCTTTACACCG------------------------------GGCGCGAGACGGGCCGGCCC
TGCTGCCGGGCGCGAGACATGCATGTACTTCGAGCCGGTCCTAAATTCTTTGTGCGTGTACATGCGCCATTTATACTGAA
TCAGCTAGCTAG--------------------------------------------------------------------
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---------------CTAGTATATATAACCTGCTGCTTATGAGTGTTCTCCAAAAGGATCAATCAATCTAATTCGTGCGC
TACTCGCCGGAAATACATAGGCAGCCAAGGACTCGAGAAATAGC
>chr6A_1838
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------------------------------------------------------------------------CTAGTTTG
GAAGCAAAGTTTTTTTTAAACTGTGGTAATTGAAAACCACAATATTACTCTAGGTGGGCAAAGAATACTACAGTTTCCTA
AAACCAATGTTTTCCTTAGTTTTATATGTGTTTGGTTGCTGCTCTTTAACCAAAGTTTTGACCAAGTATTTTAGCGTGGA
TGACTGAGTAATTAGCGGCTGCTAACGGTGACCGGCTGCATGTAGCTGCCATGCACACGATT---------------AGT
CAACTAGATTGAAGAAATAACATCGTAGGAGTAGTCAACTAGTAGATTGAAGTAGTACAATCCTAGGAGCGTGTTGCCAT
TATATGTCTATATAT-----------------------------------------------------------------
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------------------GTGCATGTACTTTCAGCCGGTCCTAAATTCTTTGTGCGTGTATATGCATCATTTATACTGAA
TCGGCTAGTTAG--------------------------------------------------------------------
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---------------CTAGCATATATAACCTGCTGATTATGAGTGTTCTCCAAAAGGAACAATCAATCTAATCCGTGCGC
TACTCGCCGGAAATACATAGGCAGCCATGGACTCGAGAAATAGC
>SNPs
------------S-----SS-------S-----------S--S-------------------------S---SSS-----
------------S-S--S--------------S------------S---S----------------S------------S
-SSS----------------S-----------------------SS----------------------------------
-----S--------------S----------S-SSSSSSSSSSSS--------------------SS---SSSS--SSS-
-S-SSSSSSSS----------S-------------S-------S---S--S------S----S----------S--S---
--------------S-----S--------------------S---SS--------S---S---S-----------S----
S----S-------S----------------S----S-----------------S-S---------S--------S-----
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S--------S--------S----S-S
----------------------------------SSS--S----------SS----SSS-S--SS-SSSSSS--------
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---------------S-------------------S------------S-----------------S------S---S--
---------------------S-----------------------------------S----------------------
----------------------------------S------S-S---------------------------------S--
-----S--------------S-S----------------S----------------------------------------
---------S------------------------------------------------------------------S---
--------------------------------------------------SSS---------------------------
-------S-------S-------------S---S----------------------------------------------
--------------------------------------------------------------------------S-----
--------SSSSSS------------------------------------------------------------------
--------------------------------------------------------S-----S-----------------
---------------------------------S-S--------------------------------------------
------------------SSSSSSS-------------------------------------------------------
------------------------------------------SSSSSSSSSSSSS------S------------------
---------S-----------------S----------S--S----------S----S--------------------SS
S-S---S------------------SS-SSSSSS-------------------S---SSSSSSSSSSSSSSS--------
-------------------------------------------------------S------------------------
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--------------------S-----------------------------------S-----------------------
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
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>forward_511
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-----------GGAGGGTGCATATGCGAAGT-------------------------------------------------
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>reverse_3701
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--------------------TCATGTACTTCGAGCCGGTC----------------------------------------
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