>input_sequence_77517
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----ATGAGCCGC---AGAAGGATAAGCAGTGCAGTCCTTGTGGTTGCCTTGCTCTTCTCCCCATTATTGCTCACGCTCT
ACCTTCCCACTGCCTGCGCTCGCCATGGTGAGTTCCCTGCTACTGTCTCCACACATCGACGTGTATCTCTATCTGTATTA
CTACTGTCTCCACCGGTCGGCCTATCTCTATCTGTATTACCGTATATATTTCCCCTGTTTGTTGGTTTTGAGATTTGCAT
CCACCCCTTGTTAAATCGTGGCACTACTATCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGACCTGAATCTCGCCGTCG
GCCGGCAGCATGTGGTTGGTGATGATGCAGGAAAGGCCGTCCCTGTCGGCGGCTCACGGCCAGTTAGGACGGTGGAGATG
CGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTACGCGTATAGGGCGAG
GGGCAAAAAGCCCATCCACAACGACGAGCCACTCGACGATGAACCCTAA-------------------------------
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>chr2D_1_TraesCS2D01G329100
GATTCATGATAAAATATATTTTTATCATATACCTTTTGGTTTCATAAATATTGATAATTTTTACACAAACTCGGTCAAAC
TTTAAGATACTTTGACGCTCCAACAAAGTTGGAAGTACATTCTTTAAAGGACGGAGGGAGTATGGCTGAATGCAGAATCA
CCTTAACTTGGGCACCTGCACATCACAACGGCCGACCAATTTTATGGGACGACTTCAGAATTCAGATCGA----------
-------ATATCCTGAACTTGTGTTCCTGACGATGATCGTGTACCCGAGCTTGCCAGGAAAAAGAGAGGTGGTAC-ACGG
TCCCAAATAGATCGACTCTCACCAAGATTCGAAGCACTAAAAACTACTGCGCCACTTGGCCACAACGCAGAAAAAGTACA
GCGACAGTGTACTTGAAACTAGTATATTACA-TTATTACTTAATGATTTTACTGAG-CGGGGGTGATAATGTGTCGTCGA
CGACCAGGAGCCAAGAAGAACCCGGCGTCGGCGCGTATGCGCATAGCTGGATTTGCAAGACATCAACACAAAAAGGGGTA
GACTTT---------TTGCCCTAGCCTTGTGGAGTAGTAGTAGGCTAGTAGCTAGGCACACATATATTCAAATACAAACT
TTCAAACAAAAAAATATATTAATATACGGCGCTTACACACGGCTCAGCGAAGAGTGAGATTAGCTCTTGTGCTCTTACTC
TTGGATGCTTTGGGTTGAT--AGTATAGACTTACCAGGCACAACCAGGATCATACCATTAAACAAGTCCTGCTCCG--GC
CTGGGGGTTCGTTAAACAAGACTATGAGGGTGGTACGGTCAGAACAGATGTTCTCTAGGTATCCATCCTCAGCTAGCTTT
GACTGCGTATCTATCCCTAGACCCCATGCTAGCAAGCAAGCCAGC--CTAAAACACTGGCCTTTGCTTTCCCTATAAAAT
CTCAACAAACCCCAACCCTGTACCTTCTCTTC-AGCTCCTATTGACACACAAACACA--------CAGGAAAAGATCGAA
CACCATGAGCCGC---AGAAGGATAAGCAGTGCAGTCCTTGTGGTTGCCTTGCTCTTCTCCCCATTATTGCTCACGCTCT
ACCTTCCCACTGCCTGCGCTCGCCATGGTGAGTTCCCTGCTACTGTCTCCACACATCGACGTGTATCTCTATCTGTATTA
CTACTGTCTCCACCGGTCGGCCTATCTCTATCTGTATTACCGTATATATTTCCCCTGTTTGTTGGTTTTGAGATTTGCAT
CCACCCCTTGTTAAATCGTGGCACTACTATCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGACCTGAATCTCGCCGTCG
GCCGGCAGCATGTGGTTGGTGATGATGCAGGAAAGGCCGTCCCTGTCGGCGGCTCACGGCCAGTTAGGACGGTGGAGATG
CGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTACGCGTATAGGGCGAG
GGGCAAAAAGCCCATCCACAACGACGAGCCACTCGACGATGAACCCTAAATCAGGCCCGTAGCTAGGTACATAGTTATAG
AAACTCAGCTAGCTAGAGCCGCTCTCTGATTTACTACTACTGCTAGTTAGCTAGATTTGCAGGCTTTGCAGG----ATAC
ATATAGCTTAGGGACCCAAATATTATGGAACAAGAATGCCTGGGTTGGCTAGGTAGTTTATTATTAGCTGGTCAACCTTA
ATCTAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTTGCAAGAACTACTGGTAGGAGAAGTTCATGCGAAGAAGGGG
CAGTTTTGTGCATGATGTGCACGCTTGGGGGCTATGCTAACCTTGTACTATATGTATGTCAGTGTTACATTTGGCAATTT
ACATG-----------TGGCTGTGTGGATTTTAGCAAGAAAGTGTGTGTCAACATCCTCACCTTATTTTGCTGCTTGTTG
ACATACGGGTCATGGGAAAAAGAACCACTTTCTGGTGAATTTAATAGCTTTCACTCTTGTTCTGTTTTCTCCTTCTGAAA
GAATGGGCAATGCTCACATCATAGTTCATGCATGTATAAGAAG--ATGCTCGCCTACCGTGTGAAGCTAATTTCTTTTGG
GCAAACTAAGCCCTCGAGGTGGGCTAGATTTTATAAAGTTAGC-ATCCCAAACAGTTAACAATGTACCAATAAAAGTTTT
TCCAAAGGAAAAGGAATGGCTTCCTAGGCCATTCTGAGATTACATTTGGAGGTTTTACTGCACAAGAAAGAGCAACAAGA
GGAAGATCTACGCAAGAAAGCCTTTTTGGCCAGAGAATGGGCAATAAGATTCCTGATCCTAGGAATATGGGTGGCCAATC
G-----TTTTTGGGAAGATACTTGGTTGGGTGACACTCTATTAGCTCTACAATACCCGATTATATATTATCGTGTTTACA
AAAGAGGATTCGGTGGCTTCTATTCTTGAGGCTCGCCCTTTAAACATCCAATTCCGCATGGCTTTGTTGGGTGACAAATG
GACTAAGTGGATCCATTCGGTTTCTTAGTTGA
>chr2B_141
TACGGCTT------------------------------------------------------------------------
--------------------------------------------------------------------AATGAAGAATCG
CCTTAACTTGTGCACCTGCGCACCACAACGACCGGCCAATTTTATGGGACGGCTTCAGAATTCAGATCGATATGTAACTT
GCAGCATATATCCTGAACTTGTGTTCCTGACGATGATCGTGTACCCGAGCTTGCCAGGAAAAAGAAAGGTGCTAC-ACGG
GCCCAAATAGATCGACTCTCACCAAGATTCGAAGCACTAAAAACTACTGTGCCACTTGGCCACGACGCAGAAAAAGTACA
G-GACGGTGTACTTGAAACTAGTATATTACA-TTATTACTTAATGATTTTACTGCGCCGGGGTTGATAATGTGTCGTCGA
CGACCAGGGGCCAAGAAGAACCCGGCGTCGGCGTGCATGCGCATTGCTGGATTTGCAAGACATCAACACAAAAAAGGGTA
GACTTT---------TTGCCCTAGCCTTGTGGAGTAGTAGTAG--------CTAGGCACACGTATATTCAAATACGAACT
TTAAAGCAAAAA---ATATTAATATACGGCGCTTACACACGGCTCAGCGAAGAGTGAGATTAGCCCTTGTGCTCTTGCTC
TTGGATGCTTTGGGTTGATAGAGTATACACTTACCAGGCACAACCAGGATCATACCATTAAACAAGTCCTGCTCCG--GC
CTAGGGGTTCGTTAAACAAGACTATCAGGGTGGTACGGTCAGAACAGATGTTCTCTAGGTATCCATCCTCAGCTAGCTTT
GACTGCATATCTATCCCTGGACCCCATACT------------AGCAACTAAAACACTGGCCATTGCTTTCCCTATAAAAT
CTCAACAAACCTCAACCCTGTACCTTCTCTTC-AACTCCTATTGACACACAAACACA--------CAGGAAAAGATCGAA
CACCATGAGCCGC---AGAAGGATGAGCAGTGCAGTCCTTGTGGTTGCCTTGCTCTTCTCCCCATTATTGCTCACGCTCT
ACCTTCCCGCTGCTTGCGCTCGCCACGGTGAGTTCCC-GCTACTGTCTCCACCGATCGA---------------------
--------------------CACATCTCTATCTGTATTGCTGTATATATTTCCCCTGTTTGTTGGTTTTGAGATTTGCAT
CCACCCCTTGTTAAATCGTGGCACCACTATCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGGCCTGAATCTCGGAGGCA
GCCGGCAGCATGTGGTTGGTGATGACGCAGGAAAGGCTGTCCCTGTCGGCGGCTCACGGCCAGTTAGGACGGTGGAGATG
CGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTACTCGTATAGGGCGAG
GGGCAAAAAGCCCATCCACAACGACGAGCCACTCGAGGATGAACCCTAAATCAGACCCGTAGCTAGGTACATAGTTATAG
AAACTTAGCTAGCTAGAGCCGCTCTCTGATTTACTACTACTGCTAGTTAGATAGATTTGCAGGCTT-GCAGG----ATAC
ATATAGCTTAGGTACCCAAATATTATGGAACAATAATGCCTGGGTTGGCTAGGTAGTTTATTATTAGCTGGTCAACCTTA
ATATAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTTGCAAGAACTACTGGTAGGAGAAGTTCATGCGAAGAAGGGG
CAGTTTTGTGCCTGATGTGCACGCTTGGGGGCTATGCTAACCTTGTACTATATGTATGTCAGTGTTACGTTTGGCAATTT
ACATG-----------TGGCTGTGTGGATTTTAGCAAGAAAGTGTGTGTGGACATCCTCAGCTTATTTTGCTGCTTGTTG
ACATACGGGTCATGGGAAAAAGAACCACTTTCTGGTGAATTTAATAGCTTTCACTCTTGTTCTGTTTTCTCCTTCTGATA
GAATGGGCAATGCTCACATCATAGTTCATGTATGTATAAGAAGATATGCTCGCCTACCGTGTGAAGCTAATTTCTTTTGG
GCAAACTAAGCCCTCGAGGTGGGCTAGATTTTTATTAACTTAATATCCAAAACAGTTAACAGTGTACTGATAAAAGTTTT
CCCAAAGTAAAAGGAATGGCTTCATAGGCCATTCTGAGATTACATCTGGAGGTTTTACTGCACAAGAAAGAGCAACAAGA
GGAAGATCGACGCAAGGAAGCCTTTTTGGCCAGAGAATGGGCAATAAGATTCTTGATCCTAGGAATATGGGTGGCCAATC
GACAAGTTTTGGGGAAGATACCTGGTTGGGTGACAC--TATTAGCTCTACGATACCCGATTATATATTATCATGTTTATA
AAAGAGGATTCGGTGGCTTCTGTTCTTGAGGCTAGCCATTTGAACATCCAATTCCGCATGGCTTTGTTGGGTGACAAATG
GACTAAGTGGATCCATTCGGTTTCTAAGTTGA
>chr2A_175
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--------------CCTACACACCACAAGGGTTGGCCAATTTTATGGGACGACTTCAGAATTCAGATGGCTATGTAATTT
GCAGCATCTATCGTGAATTTGTGTTCCTGACGATGATCGTGTACTCGAGCTGGCCTGGGAAAAGAAAGGTGTACATACGG
TCCCAAATAGATCGACTCTCACCAAGATTCGAAGCACTAAAAACTACTGCGCCACTTGGCCACGACGCAGAAAAAGTACA
GCGACGCTGTACTTGAAACTAGTATATTACAGTTATTACTTGATGATTTTACTGCGCCGGGGGTGATAATGTGTCGTCGA
CGACCAGGGGCCAAGAAGAACCCGGCGTCGGCGTGCATGCGCATAGCTGGATCTGCAAGACATCAACACAAAAATGGGTA
GTAGACTTTTTGCCCTTGCCCTAGCCTTGTGGAGTAGTAGTAG--------CTAGGCACACATATATTCAAATACAAACT
TTCAAACAAAAG---CTATTAACATACGGCGCTTACACACGGCTCAGTACAGAGTGAGATTAATTAGGTCTTG--TGCTC
TTGGATGCTTTGGGTTGATAC-----ACACTTACCAGGCACAACCAGGATCGTAGCATTAAACAAGTCCTGCTCCTCTGC
CTGGGGGTTCGTTAAACAAGACTATCAGGGTGGTACGGTCAGAACAGATGTTCTCTAGGTATCCATCCTCAGCTAGCTTT
GACTGCATATCTATCCCTAGACCCCATACT------------AGC--CTAAAACACTGGCCATTGCTTTCCCTATAAA-T
CTCAACAAACCCCAACCCTGTACCTTCTCTTCAAACTCCTATTGACACACAAACACATACACACGCAGAAAAAGATCGAA
CACCATGAGCTGCAGAAGAAGGATCAGCAGTGCAGTCCTTGTGGTTGTCTTGCTCTTCTCCCCATTATTGCTCACGCTCT
ACCTTCCCACTGCTTGCGCTCGCCATGGTGAGTTCCCTGCTACTGTCTCCACCGATCGA---------------------
--------------------CCTATCTCTATCTGTATTATTGTATATATTTCCCCTGTTTATTGGTTTTGAGATTTGCAT
CCACCCCTTGTTAAATCGTGGCACTACTATCTCTGCAGTGGCGGTGCTCGGCGCAAGAGATGGCCTGAATCTCGGAGGCG
GCCGGCAGCTTGTGGTTGGTGATGATGCAGGAAAGGCCGTCCCTGTCGGCGGCTCACGGCCAGTTAGGACGGTGGAGATG
CGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTACGCGTATAGGGCGAG
GGGCAAGAAGCCCATCCACAACGACGAGCCACTCGACGATGAACCCTAAATCAGACCCGTAGCTAGGTACATAGTTATAG
AAACTTAGCTAGCTAGAGCCGCTCTGTGATTTACTACCACTGCTAGTTAGCTAGATTTGCAGGCTTTGCCGGATACATAC
ATATAGCTTAGGTACCCAAATATTATGGAACAATAATGCCTGGGTTGGCTAGGTAGTTTATTATTAGCTGGTCAACCTTA
ATCTAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTTGCAAGAACAACTGGTAGGAGTAGTTCATGCGAAGAAGGGG
CAGTTTTGTGCCTGATGTGCACGCTTGGGGGCTATGCTAACCTTGTACTATATGTATGTCAGTGTTACATTTGGCAATTT
ACATGTGTCCTGGTCCTGGCTGCGTGGATTTTAGCAACAAAGTGTGTGTCAACATCCTCAGCTTATTTTGCTGCTTGTTG
ACATACGGGTCATTGGAAAAAGAACCACTTTCTCGTGAATTTAATAGCTTTCGCTCTTGTTCTGTTTTCTCCTTCTGATA
GAATGGGCAATGCTCACATCATGGTTCATGTATGTATAAGAAGAT--GCTCGCCTACCGCGTGAAGCTAATTTCTTTTGG
GCAAACTAAGCCCTCGAGGTGGGCTAGATTTTAC-TAACTTAATATCCCAAACAGTTAACAGTGTACCGATAAAAGTTTT
CCCAAAGGAAAAGGAATGGCTTCATAGGCCATTCTGAGATTACATCTGGAGGTTTTACTGCACAAGAAAGAGCAACAAGA
GGAAGATCTACACAAGGAAACCTTTTTGGCCAGAGAATGGGCAATAAGATTCTTGATCCTAGGAATATGGGTGGTCAATC
GAGAAGTTTTTGGGAAGACACCTGGTTGGGTGACAC--TATTAACTCTACGATACCAGATTATATATTATCGTATTTATA
AAAGAGG--TCGGTGGCTTCTGTTCTTGAGGCTAGCCATTTGAACATCCAATTCCGCATGTCTTTGTTGGGTGACAAATG
GACTAAGTGGATCCATTCGGTTTCTAAGTTGA
>SNPs
S-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------S
----------S-----------S-----------S---------------------------------------------
-----------------------------------------------------------------S-----S--------
---------------------------------------------------------------S----------------
-----S------------------------------------------------S-------------------------
--------S------------------------S-S--------------------------------------S-----
-------------------------------------------SSSSSSSS-----------------------------
------------SSS-------------------------------------------------------------S---
---------------------------S----------------------------------------------------
-------------------------S------------------------------------------------------
------S--------------------S--SSSSSSSSSSSS-------------------S------------------
----------------------------------S---------------------------------------------
------------------------S-------------------------------------------------------
-------------S--------------------------------------SS-----SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--------------------S---------------------------------------
--------------------------------------------------------------S-----------SS-S--
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------------------------------------------------------S-------------------------
-----S--------------------------------------------------------------------------
------------S--------------------S----------------------------------------------
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-----------S--------------------------------------------------------------------
------------------------------------------------------------S-------------------
------------------------------------------------------------------------------S-
------------------------------S-------------------------------------------------
---------------------------------SSS-SS-SSS------------------S------S-----------
S----------------------S---------------------S----------------------------------
----------------S-----------------------------------S---------------------------
---------------------S--------------SS------------S---------------------------S-
---------------------S-----------S---S---S--------------------------------------
-------------------------S------
>forward_913
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-------------TCCCTAGACCCCATGCTAGC-----------------------------------------------
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>reverse_2502
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---------------------ATTCTTGAGGCTCGCCCTTT---------------------------------------
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