>input_sequence_77516
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------------ATGAACACCCGCGACCTCCTCTTCTCCGGCCTCGACCTCGTCAAGCAACAGGCGAGCGCCGTGGCCTC
CACCGTCTCGTTGGCCAAGCCGTACCTCCCCGCAAAGCTAACCGAGATGAACACCGGCAACATCGTCGCGGGTCTCGGCT
ACGTCAAGAACCATACAGGAGCGGCCGTGGCCTCCACCGTCTCATTGGCCAATCAGTACCTGCCCGCAAGGCTTACCGGG
ATGAACACCGGCGACATCGTCGCAGGTCTCAGCTACGTCAAGAACCATAC---AGCGGCCATGGTCTCG-----------
-------------------------------ACGCGCGACGGCGCCGTGGGGACCGCGGCGATGGTCATCGGGGGCGCCG
TGGGCGCCTACTTCCTCTGGCCCGCTGCGGCCGCCCCCGCCGCGGCCGGCGCCATGATGAAGGCGCCTAGTGCCGCCGGC
TTCCTCATCTCCCGCACGGCGTTTGTGGCTAACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGC
CGCCGCCGCATTCGTGTAG-------------------------------------------------------------
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>chr2D_1_TraesCS2D01G181100
ATCTAAAACTAAGACAAGTAATTTCAGACGGAGAAAATATGTTTTTACCGCTACGTCCCTGGTACTAGTATCAACTTGAA
ATGTGACACGACAAAATTAGTGGCAAAGTTATTAAACCATTCTCTGTTTTGTGGTCGCATCGTGGTAGCAGGTGAAAGAA
TCTCCTTTTGATCGATCTAGTCACTAGCTTTTGTCCCGTATGAAGACTCCAACATTTGAAGTACGACACGCATAATGCAC
GTACGGATCCTGAGGCAGGAACGCTCGGAGACATGAAGTGGTGCAAAC--------------------------------
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---------------------------TTAGTGAGTAAGAATAGCTTTATTCGAAAAAAGTAGGAATAGC-AAAAAATCA
CTTTGGTGGATGAGCTCGC--GAGCCTTATATTTGGAATAGTGCTAAAATGGTATTCCTAAGTTTAAAAAAATTCTGATA
AAAATTCAACATGTTCATATGAATGTATATTACACATTGCA---------------------------------------
-----------------------------------------------------------AAAATCATAAAAAAGAAGGGG
GAATAA---ATAGTCGTATAGAGTGTGCCACGGCTGTGTGAATGCACACAGGACCACCATGTATTGAGGACATTTTGCCT
CTCGACTGTAACTGCCTCAATGTGGAATAAAACTCCTTTTTCCCCAGC--AAAAAAGGAAAATAATTTTAAAAAATGATG
TTTTTTTT--GGGTGAA---------------------------------------------------------------
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----------------------------------------------CTTCTACAGATCTTAAACACAACGTCCTGGTCGA
GGTGACTGCCTTCCGCGCCACGCCCGG--------TGCTTTCGGCGAGTGCGGACGTAGGGAC-------CAGCCATGAA
TGATTTTGTCGCCTCTTTCCTCATCTTTGGATTCTTTTTCATA-TGGTGACATGATTAGTGCTGTGTTTTTCCAACGTAA
AGTCGATAGTAGTACTAGTAGTACTGTTGGTACGTAGTCAAGGTCGTCGCCTAGGTATAGATCACATTCGTCGCTATAAA
TCCATGCTTTGCCTTGCTTCGTCTATCCATCTAGTGAGGTTAGTCCAGACTCCACACAGATAACCACAAGTCGGAAAGGA
AAACCAGGCGAGATGAACACCCGCGACCTCCTCTTCTCCGGCCTCGACCTCGTCAAGCAACAGGCGAGCGCCGTGGCCTC
CACCGTCTCGTTGGCCAAGCCGTACCTCCCCGCAAAGCTAACCGAGATGAACACCGGCAACATCGTCGCGGGTCTCGGCT
ACGTCAAGAACCATACAGGAGCGGCCGTGGCCTCCACCGTCTCATTGGCCAATCAGTACCTGCCCGCAAGGCTTACCGGG
ATGAACACCGGCGACATCGTCGCAGGTCTCAGCTACGTCAAGAACCATAC---AGCGGCCATGGTCTCG-----------
-------------------------------ACGCGCGACGGCGCCGTGGGGACCGCGGCGATGGTCATCGGGGGCGCCG
TGGGCGCCTACTTCCTCTGGCCCGCTGCGGCCGCCCCCGCCGCGGCCGGCGCCATGATGAAGGCGCCTAGTGCCGCCGGC
TTCCTCATCTCCCGCACGGCGTTTGTGGCTAACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGC
CGCCGCCGCATTCGTGTAGGGAAGCAAGCAAGCGCGCCCCTTCGATCTCT--CCCGTTTGCTTTGTTTCGTGTACTGTGT
TTAATTA--AGTGTGGTTCGACTATAT-GGTGGTTCATTCCATCTA------------GTACTGTATACTCCTTGCCGTG
GGAGGGA----GAAGAC---GGGGTGATAATAAGCGCTGCCTCGTACTGGTATTTTTCATTGTTCTGGTCATTGTGTTCT
GTTTGCTATATTATGGTGTTTTTGAAGCAATTGCTGGCTGCTGCTTCCTG-------CTGTATTCTCAGTTCATGTGCCG
AATTGTTCCTATATTGT-------TATGATTCTGTTGTCTCTTCTCTAGTAGTCCATCTGAATATCCGATGGATCAGTGA
ACCTAATATCCGATGGAGTACATGGTTTCAGGAAAACCGTGGGCAGATGACTACGGATCGATGCAGAAAATTCGCGGAAG
TTAGGGTGTGAAAGAATCTCCTTTTGCTACATCTAGTCACCGTAGTGCT-------------------------------
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--------------------------------TCCTGGAAAGAGGTAAAAGAATCTTTTTCTGATCGATCTATCTAAGCT
GAGAAAGAAAAGAAAAGTTAAAACATGCATGCACGCTGCACGTACGGATATACAATGTTTTGATAGAAAAGTTCTGAACG
GGATGCTGACAAGAGTACTCTGCTGATAAAGGAATGGGCACCGGTAGTCGCCGGTTGACCGGTCGCCTCGAGTCGCCGGA
TTCAGTTCTTAACGTCTGTTTGGATCGATGGTTCCGCAGCAGAATAAGTCAACGCACGCAAATCGTCTATTATATGGTCC
TGCATAGCTCTGGCGAGGCCGTTCCCCTTGCAAATCGTCGCCCACAACGCTCACAGCCGGCGACACCCTCTTTGCCAGAT
TGGTAGATGCCGCTCTCAGGATGTATCCGTCCACGTCCCCCGTACACAGGTGTAACGACCAACCTGATAGGGTTCAGCGA
TCCATGCTTACCATGTCAGTGCGGATCGATTCACCATCACACACGGTACCGATATAGTATAATATCAAACACGAATGCAT
>chr2B_1
ATCTAAAACTAAGACAAGTAATTTTAGACGGAGAAAGTATGTTTTTACCGCTACGTCCCTGGTACTAGTATCAACTTGAA
ATGTGACACGTCAAAATTAGTGGCAAAGTTATTAAACCATTCTCTGTTTTGTGGTCGCGTCGTGGTAGCAGGTGAAAGAA
TCTCCTTTTGATCGATCTAGTCACTAGCTTTTGTCCCGTATGAAGACTCCAACATTTGAAGTACGACACGCATAATGCAC
GTACGGATCCTGACGCAGGAACGCTCGGAGACATGAAGTGGTGCAAAC--------------------------------
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---------------------------TTAGTGAGTAAGAATAGCTTTATTCGAAAAAAGTAGGAATAGC-AAAAAATCA
CTTTGGTGGATGAGCTC--GTGAGCCTTATATTTGGAATAGTGCTAAAATGGTATTCCTAAGTTTAAAAAAATTCTGATA
AAAATTCAACATGTTCATATGAATGTATATTACACATTGCA---------------------------------------
-----------------------------------------------------------AAAATCATAAAAAAGAAGGGG
AAACAA---ATAGTCATATAGAGTGTGCCACGGCTGTGTGAATGCACACAGGACCACCATGTATTGAGGACATTTTGTCT
CTCGACTGTAACTGCCTCAATATGGAATAAAAATCCTTTTTCCCCAGCGAAAAATAGGAAATAAATTCAAAAAAGTGATG
TTTTTTTTGGGGGTGAA---------------------------------------------------------------
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----------------------------------------------CTTCTACAGATCTTAAACACAACGTCCTGGTCGA
GGTGACTGCCTTCCGCGCCACGCCCGGGCATCCTGTGCTTTCGGCGAGTGGGTACGTAGGGAC-------CAGCGATGAA
TGATTTTGTCGCCTCTTTCCTCATCTTTTGATTCTTTTTCATATTGGTGACATGATTAGTGCTGTGTTTTTCCAACGTAA
AGTCGATAGTAGTACTGTTG-------------GTAGTCAAGGTCGTCGTCTAGGTATGGATCACCTTCGTCGCTATAAA
TCGACGCTCTGCGTCGTCTCATC----CATCTAGTGAGGCTAGTCCAG-------ACAGATAACCACAAGTCGGAAAGGA
AAACCAGGCGAGATGAACGCACGCGACCTCCTCTTCTCCGGCGTCGACATCGTCAAGCAACAGGCGAGCGCCGTGGCCTC
CACCGTCTCGCTGGCCAAGCCGTACCTCCCGGCAAAGCTAACCGAGATGAACACGGGCAACATCGTCGCCGGTCTCGGCT
ACGTCAAGAACCATACAGGAGCGGCCGTGGCCTCCACCGTTTCGTTGGCCAAGCCGTACCTCCCAGCAAGGCTTACCGGG
ATGAACACCGGCGACATCGTCGCAGGTCTCGGCTACGTCAAGAACCATACGGGAGCGGCCATGGTCTCCACCGTCTCGTT
GGCCAAGCCGTACCTGCCCGCAAAGCTCTCCACGCGGGACGGTGCCGTGGGAACCGCGGCGATGGTCATCGGGGGCGCCG
TGGGCGCCTACTTCCTCTGGCCCGCTGCGGCCGCCCCCGCCGCGGCCGGCGCCATGATGAAGGCGCCTGGTGCCGCCGGC
TTCCTCATCTCCCGCACGGCGTTCCTGGCCAACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGC
CGCCGCCGCTTTCGTGTAGGGAAGCAAGCAAACGCGCCCCTTGGATCTCTCCCCCGTTTGCTTTGTTTCGCGTAGTGTGT
TTAATTA--AGCGTGGTTCGACTATAT-GGTGGTTCATTCCATCTATTCTACTGCTGTATACAGTATACTCCTTGCCGTG
GGAGCGA----GAGAAGATGGGGGTGATAATAAGCGGTGCCTCGTACTCGTGTTTGCCATTGTTCTAGCCATTGTGTTCT
GTTTGCGATATT--GGTG-TTTTGAAGCAATTGCTGGCTGCTGGTTCCTG-------CTGTATTCTCAGTTCATGTGTCG
AATTGTCCCTATATTGT-------TATGATTCTGTCGTCTCTTCTATAGTACTC--------------------------
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>chr2A_13
------------GACAAGTAATTTTAGACAGAGAAAATATGTTTTTACCGCTACGTCCCTGGTACCAGTATCAACT-GAA
ATGTGACACGATACAACTAGTGGCAAAGTTATTAAACCATTCTTCGTTTTGTGGTTGTATCGTGGTAGTAGGTGGAAGAA
TCTCCTTTTGATCGATCTAGTCACTAGCTTTTGCCCCGTACGAAGACTCCAACATCTGAAGTACAAAATGCATAATGCAC
GTACGGATCCTGACGCAGGAACGCTGGGAGACATGAAGTGGTGCAAACTTAGAGCCCGTTCGGATCTCCTCCACGATCCA
ACTTCTCGAGAAGCTGGCGAGAAGCCAGTCGAACGACCCGGCTCCTGGAATCTGGCTCCTGGAATCTGACTCGGCTCCAG
TGCAATTTCTGGAAGCAGCCCCGCCCCAGCTCCTAGATTCTGGAGAAGCGGGAGTTGCCGGATATTACATTCCATGCCAT
CCCGAAGTGCTACAGCCCACCCAGCGAACCGTTTTCCTATCGCTAATGCCCCATCGAATCGTTTTTCTCTCGCTACAGTG
TACCAAGTCGCTGCCGAACGCTCGCTGGCTCCCGTGAGAAGCGAGCTAGCACTAGCTCGCGCGAGAAGCTGGCTTTCGGA
GAAGCCAGCGGACTTCGGAACGAGCCCTTAGTGAGTAAGAATAGCTTTATTCGAAAAAAGTAGGAATGGCAAAAAAATCG
CTTTGGTAGATGAGCTCTGGTGAGCCATATATTTTGAACAGTG-TAAAATGGTATTCTGAAGTTTCAAAAAATTCAAA-A
AAAATTCAACGTGTTCATATGAATGTATTTACACATGTGTAATTTCTGATGATGAAATGAGTTACACAAAAATGGAAAAT
ATCGTAAAGATGAACAATATATTCTGCTTGCGAGCTCATTTGAGCTCACGATGAACAGTAAAATCATAAAAAAAGGGAGT
GAAACAAATATAGTCGTATAGAGTGTGCCACGGCTGTGTGGAAGCACGCAGGACCACCTTGTATTGATGACATTTTGCCT
CTCGATGGTAAGTCCCTCAATATGGAATAAAATTCCTTTTTCCCCAT---AAAAAGGAAAATAATTTTTAAAAAATGATG
TTTTTTTGGTCTGTTTGGTTCATAAGTCCTAGGACTTTTTTTAGTCCCAACTTATAAGCCGCAAGTCCCTAAAAAGTCCC
TACCTGTTTGGTTCCCGGGACTTATAAGTCTCTATAAGACCATATTACAACTATAAGTCTCTATAAGTTCCTCCTTAAGA
GTCTTATTTCATAAGTCTCAAATGCCCATTTTAAAACCCTATAAGTCCTTCCTATTTGGTTTAGATGAGACTTATAGAAA
CTTATTTAAGTCCCTAGACCAATAAGTTCCTGGAAACAAACACCCTCTTATACAGATCTTAAACACAACGTCCTGGTCGA
GGTGACTGCCTTCCGCGCCACGCCCGGGCATCCTGTGCTTTCGGCGAGTGGGTACGTTGGGACTTGGGACCAGCGATGGA
TGATATTGTCGCCTCTTTCCTCATCTTTTGATCCTTTTTCAT--TGGTGACATGATTAGTGCTGTATTTTTCCAACGTAA
AGTCGATAGTAGTACTGTTG-------------GTAGTCAAGGTCGTCGTCTAGGTATAGATCACCTTCATCGTTATAAA
TCCACGCTTTGCGTCGTCTCGTC----GATCTAGTGAAGTTAGTCCAGACTCCACACAGATAACCACAAGTCGGAAAGGA
AAACCACGCGAGATGAACACACGCGACCTCCTCTTCTCCGGTCTCGACCTCGTCAAGCAACAGGCGAGCGCCGTGGCCTC
CACCGTCTCACTGGCCAAGCCGTACCTCCCCGCAAAGCTAACCGAGATGAACACCGGCGACATCGTCGCCGGTCTCGGCT
ACGTCAAGAACCATACAGGAGCGACCGTGGCCTCCACCGTCTCATTGGCCAATCAGTACCTGCCCGCAAGGCTTACCGGG
ATGAACACCGGCGACATCGTCGCAGGTCTCAGCTACGTCAAGAACCATAC---AGCGGCCATGGTGTCG-----------
-------------------------------ACGCGCGACGGCGCCGTGGGGACCGCGGCGATGGTCATCGGGGGCGCCG
TGGGCGCCTACTTCCTCTGGCCCGCTGCGGCCGCCCCCGCCGCTGCCGGCGCCATGATGAAGGCGCCTGGTGCCGCCGGC
TTCCTCATCTCCCGCTCGGCGTTCCTGGCCAACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGC
GGCCGCCGCATTCGTGTAGGGAAGCAAGCAAGCGCGCCCCTTCGA--TCTCCCCCGTTTACCTTGTTTCGTGTACTCTGT
TTAACTGAGAGTGTGGCTCGACTATATGGGTGGTTCATTCCATAGTA-------CTGTGTAGCGTTTACTCCTTGCCGTG
GGAGCGATCGAGAAGAT---GGGATGGTAATAAGCGCTGCCTTGTACTCGTATTTTCCATTGTTCTAGTCATTGTGTTCT
GTTTGCGATATTATGGTG-TTTTGAAGCAACTGCTGGCTGCTGCTTCCTACTCCGTACTGTATTCTCAGTTCATGTGTGG
AATTGTTCCTATATTGTTATATGTTATGATTCTGTTGTCTCTTCTGTACTAATCCATCTGAATA----------------
--------TCCGATGGAGTACATGGTTTCGGGAAAACCGTGGGCAGATGACTACGGATCGACGCAGAAAATACGCGGAAA
TCAAGGTGTAAAAGAATCTTCTTTTGCTACATCTAGTCACCGTAGTGCTAAGAGCAACGCTACATGCACGGGCTCTTTTT
TACGGGATCAACGGACTGGCTAGATTGGCATGTTTTGATTGGGTAGAATTATGGTGAGGGGGCCATCCTCACTGAAAATC
GGGGAGGGGGGGGGGGGGATGATTAGTTTGGAATATGCCCGTAAAATCTAATAACCAGTTCGTGCGTTTAGAATTTTCGT
AGTGCTAAAGCATTCTCATAAATAAAACTGCTTCCTGGAAAGAGGTAAAAGAATCTTTTTCTCATCGATCTATCCAAGCT
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>SNPs
------------------------S-------------------------------------------------------
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-------------S------------------------------------------------------------------
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-----------------SS-------------------------------------------------------------
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---S----------------------------------------------------------------------------
---------------------S----------S----------------------------SS-----------------
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--------------------------------------------------S-S---------------------S-----
----------------------------S---------------------------------------------------
----------------SS-SSSSSSSSSSSSSS----------------S---------------S--------------
----S-------S-S-SS-----SSSS-----------------------------------------------------
--------------------S-----------------------------------------------------------
----------S----------------------------------------------------------S----------
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--------------------------------------------------------------------S-----------
-----------------------SS----S--------------------------------------------------
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--------------------------------------------------------------S-----------------
----S-----------S-------------------------------S-------S---------S-------------
------S-----------S----------------------------------------------------------S--
---------------------------------------------S-----S------------SSSSSSSSSSSSSSSS
SSSSSSSS---------------------S-------------------------------S---------S-------S
-S-S-----S---------S------------------------------------------------------------
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--------------------------------------------------------------S-----------S-----
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_254
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--------------------------------------------------------------------------ATGCAC
GTACGGATCCTGAG------------------------------------------------------------------
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>reverse_3228
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---------------------------AAAGGAATGGGCACCGGTAG---------------------------------
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