>input_sequence_77513
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----------------ATGAGGGGCATGAGTGGC----------------------------------------------
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-----------------------------------------------------------GACGCCGGCGGCATGGGCGCG
ATGCCGATGTCGCCACCGCCGGCCGACCACGCGGCAACGAAGGCGGCGGCGCCGCACAAGATGATGGGGATGATGCACAT
GACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCT
GCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAG
GACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGT
GATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTCGGGTTCCTCTTCGCGC
GGCGCAGAGTGCGCACCG------CGCGCGCGAATATCGCATCCCCTGAGCTCTGTGGCGTCCCGCCTTCGCACCCGTCC
AAGCCTTAG-----------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G313200
GGAGGCTCACGATCGGCGCCAACACATAGTTCACGGCAGTTAGGACCGGACCAAACGAAGTTCGCATCTAAACGATTACA
TAGCTCGAAGCGAGAGCTCAGAGCACGCAGGCTCAGGCACGCATGCCTTTGGTGTCTCCTGATGCTAAGAATTCTTAAGA
ATTACTCCTTCCGTTCGAAATTACTTATCGTCAAAATAGATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTC
GAGACAAGTAATTCCGAACGGAGGGAGTAGGTCAGTGC---TAGAAACATGGAGTATGAACATGTCGTGACAGTGGCACA
CACAACAAGGAACAATAATGCGCTGGTGTGGCATTCAAAATATTCGAAACGGACCTGAAACCTAGGGCATGCACTATAGC
TCTGCAGACCGCAGTGTTTGTTGCTTGCACAGGAAAACCCATTAAATACTCCCTGGTGAGTAGATTGAGATTCCATCAGA
TGAGGGAGCTTCCAGAGTTGGATCGGTGTCACTA---------CCTGCGCGCGTGACTGGCAGGTTGGGCATGCTTTTCT
CACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACCAGTAGGA--------AATTTTGGCAGACGGAAACCAAA
ACCACCGGTAGGAGTTGACAATACAGTAGCAGAACCTTAGCTCTACCAAACTATCCTCGCCGCCTCAGATCAGATGCTG-
-------------GGCCAAGCCAATCTGTAGCGGCTACGGCGTAC-------TACAAAAC-GTCTCGATCGA--GCGCGC
GGCTGAGCAGGCGACAAGCAACCGCGACGC------------CGGTCCCCTCCTCGGTTGCCCAGTGCAGTCACGAGACG
GACGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCGCTGCCCTGCGCTTCTCCTGATTTTAGTAAGTTTCCTCCGCGCC
ACTGGTCACGTTATATCTGCGCTACATCCCGCTGCCCCAGCGCCTCCCCTTCGCTTGCTCTGCCCGCTTCGCTAGGAACC
CAAGAAACATCTGGCAATGAGGGGCATGAGTGGC----------------------------------------------
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-----------------------------------------------------------GACGCCGGCGGCATGGGCGCG
ATGCCGATGTCGCCACCGCCGGCCGACCACGCGGCAACGAAGGCGGCGGCGCCGCACAAGATGATGGGGATGATGCACAT
GACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCT
GCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAG
GACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGT
GATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTCGGGTTCCTCTTCGCGC
GGCGCAGAGTGCGCACCG------CGCGCGCGAATATCGCATCCCCTGAGCTCTGTGGCGTCCCGCCTTCGCACCCGTCC
AAGCCTTAGTCAGATTCCGGTGAAAATTGCTTCTGTGATCTTCTTGTACTAGCCCTGCCCTTTCACTATGTCAGATCCAA
TTTGTACTGGTACCCCTAAATCCTAAA-----------TCCTACTCCTGCTCCATAAGTCCAGATACTTGCTGAAACATG
TGTTTACAAATGTCTTATACAGGGACTAACCAGCAACCACTAGTGATCTCGTTTTACGAAGGTGTCTATTTTGTTTCTCT
CAACTATTGTCCGTGTTTAGACTCCATCCTCAAATTCCCAAACCGATAACCTCTTCAAACTAAACTCC---ATCAAATTA
TGCCGTGCAGTTCTGTTTTCATTATGTCCACGATGTGGGAGGAAGAGCTTCCGATGCTCACATAAGTACGTTTTTTTTCT
GACAAAAAGGTTGATCTAGCTATCTATCTATTACTAGTACTATATATTATCTATCTAT---TATATAATTGTACACTAAA
ACTAAGATTTATCAACGGTTAATATTTTAGTGCATGTCAAAGTAATAAACGCTCGTCAAGTGGCTAGGAAGATCCACGCC
AGGAAGAAGATACCCGGAGTGTTTATCAAGCTGGATATTTCGAGGGCGTTCGACTCATTATCGTGTCCATTCCTATTTGA
GGTCATGGGAGCTGAGGGCTTTGGCCAAAGATGGGCCGCCTGGATGATGGCGCTGTTACACTCTGCCAGCACCAAGGTGG
TGGTGAATGGAGTGCCCCGAAGGAAGTTTGTGCACGCATGTGGCCTGATACAGGGCGACTTGATTTCGCCGATGCTTTTC
GTCATTGCCATGGACACGCTGACTGCGATACTCAACATGGCCACTGACATGGGTGTGCTCAGTTCATACTCAGGGATCTC
AGCGATGCAAAGACTCTTGATTTACGTGGATGACGTGGCGCTTTTCATCAAGCCCTTGCCGCAAGACATGACGGCAGTGC
GTGAGATTTTGGAGGCACTTGGTGAAGCTTTGGGCCTAAAGGTCAAATACCGCAAGTCCGCGGCGA
>chr2D_123
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------------------------------------------ATGCCTTTGGTGTCTCCTGATGCTAAGAATTCTTAAGA
AT------------------------------------------------------------------------------
---------------------------TAGGTCAGTAC---TATAAACATGGAGTATGAACATGTCGTGACAGTGGCACA
CACAACAAGGAACAATAATATGCTGGTGTGGCATTCAAAATATTCGAAACGGACCTGAAACCTAGGGCATGCACTATAGC
TCTGCAGACTGCAGTGTTTGTTGCTTGCACAGGAAAACCCATTAAATACTCCCTGGTGAGTAGATTGAGATTCCATCAGA
TGAGAGAGCTTCCAGAGTTGGATCGGTGTCACTA---------CCTGCGCGCGTGACTGGCAGGTTGGGCATGCTTTTCT
CACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACCAGTAGGA--------AATTTTGGCAGACGGAAACCAAA
ACCACCGGTAGGAGTTGACAATACAGTAGCAGAACCTTAGCTCTACCAAACTATCCTCGCCGCCTCAGATCAGATGCTG-
-------------GGCCAAGCCAATCTGTAGCGGCTACGGCGTAC-------TACAAAACGGTCTCGATCGAGCGCGCGC
GGCTGAGCAAACGACAAGCAACCTCGACGCTGCGGGGGGTGCCGGTCCCCTCCTCGGCTGTTCAGTGCAGTCACGAGACG
GACGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCTCTGCCCTGCGCTTCTCCTGATTTTAGTAAGTTTCCTCCACGCC
ACTGGTCACGTTATATCTGCGCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGCCGGCGGCATGGGCGCG
ATGCCGATGCCGCCACCGCCGGCCGACCACGCGGCAACGAAGGCGGCGGCGCCGCACAAGATGATGGGGATGATGCACAT
GACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCT
GCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAG
GACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGT
GATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTGGGGTTCCTCTTCGCGC
GGAGCAGAGTGCGCACCGGCGCGGCGCGCGGGAATGTCACATCCCCTGAGCTCTGTGGCGTCCCGCCGTCGCACGCGTCC
AAGCCTTAGTCAGATTCCTGTGAAAATTGCTTCTGTGATCTTCTTGTACTAGCCCTGCCCTATCACTATGTCAGATCCAA
TGTGTACTGGTACCA-------CTAAA-----------TCCTACTCCTACTCCACAAGTCCAGATACTTGCTGAAACATG
TGTTTACATCTGTCTTATACAGGGCCTAACCAGCGACCAGTAGTGATCTCGTTTTACGAAGGTGTCTATTTTGTTTCTCT
CAACTATTGTCCGTGTTTAGACTCCATCCCCAAATTCCCAAACCGATAAACTCTTCAAACTAAACTTCCGATGCTCACAT
ACTTTA--------GTTTTCATTATGTCCACCAGGTAGGAGAAAGAGCTTCCGATGCTCACATAC------TTTTTTTTT
TACAAAAAAGTTGATCTATCTATTA---------------TATATATTATCTATCTATTACTATATAATTGTACACTAAA
ACTAAGATTTATCAACGGTTAATATTTTAGTAGATGTGAAAGTAATAAACGCACGT------------------------
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>chr2A_268
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---------------------------TAGGTCAATACTAGTATGAACATGGAGTATGAACATGTCGTGACAGTGGCACA
CACAACAAGGAACAATAATGCGGTGGTGTGGCATTCAAAATATTCGAAATGGACCTGAAACCTAGGGTATGCACTATAGC
TCTGCAGACTGCAGTGTTTGTTGCTTGCACAGGAAAACCCATTAAATACTCCCTGGTGAGTAGATTGAGATTCCATCAAA
TGAGAGAGCTTCCAGAGTTGGATCGGTGTCACTAGCGACGCCACCTGCGCGCGTGACTGGCAGGTTGGGCATGCTTTTCT
CACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACCAGTAGTCGGAGTCGGAATTTTGGCAGACGGAAACCAAT
ACCACCGGTAGGGGTTGACAATACAGTAGCAGAACCTTAGCTCTACCAAACTATCCTCGCCGCCTCAGATGAGATGCTGA
GAAAATAATGCTGGGCCGAGCCAATCTGTGGCCGCTACGGCGTACGTACTACTACAAAACG-TCTCGATCGAGCGCGCGC
GGCTGAGCAGACGACAAGCAACGGCGAC------------GCCGGTCCCCTCCTCGGTTGCTCAGTGCAATCACGAGACG
GGCGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCGCTGCCCTGCGCTTCTCCTGATTTTAGTAAGTTTCCTCCGCGCC
ACCGGTCACGTTATATCTGCGCTACATCCCGCTGCCCCAGCGCCTCCCCTTCCC-TGCTCTGCCCGCCTCGCTAGGAACC
CAAGAAACATCCAGCAATGAGGGACATGAGCGGC----------------------------------------------
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-----------------------------------------------------------GACGCCGGCGGCATGGGAGCG
ATGCCGATGCCGCCACCGCCGGCCGACCACGCCGCCACGAAGGCGGCGGCGCCGCACACAATGATGGGGATGATGCACAT
GACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGGCTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCT
GCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACAGAGGCCCTCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAG
GACGGCGCCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACGGCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGT
GATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGCGGCAGTCGCCGGCCACGCCGTCGGGTTCCTCTTCGCGC
GGAGCAGAGTGCGCACAGGCGCGGCGCGCGGGAATGTCACATCCCCTGAGCTCTGTGGCGTCCCGCCGTCGCACCCGTCC
AAGCCTTAGTCAGATTCCGGTGAAAGTTGCTTCTGTGATCTTCTTGTACTAGCCCGGCCCTATCACTATGTCGGATCCAA
TGTGTACTGGTACCC-------CTAAATCCTACTACATTCCTACTCCTACTCCACAAGTCCAGATACTTGCTGAAACATG
TGTTTGCATCTGTCTTATACAGCGACTAACCAGCAACCACTAGTGATTTCGTTTTACGAAGGTGTCTATTTTGTTTCTCT
CAACTATTGTCCATGTTTAGACTCCATCCTCGAATTCCCAAACTGATAAACTCTTCAAACTAAACTCCTCCATCAAATTA
TGCGTGCAGTTTTT------ATTATGTCCACGATGTAGGAGGAAGAGCTTCCGATGCTCGCATACGCTA-----TTTTTT
TACTAAAAGGTTGA-------ATCTATCTAATTTTTTTTCGGGGA--TATCTATCTAT---TATATAATTGTACACTAAA
ACTAAGGTTTATCAACGGCTAATATTTTAGTAGATGTGAAAGTAAT----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------S------------------------------------
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---------S----------------------------------------------------------------------
----S---------------------------------------------------------------------------
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----------S--------------------------------------------------S------------------
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----------------------------------------------------S-S------------S------------
-----------SS----------S------S-------------------------------------------------
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---------S----------------------------------------------------------------------
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--S---------------------------S----S--S----------------------------S------------
-------------------------------------------------------------S------------------
-S-------------SSSSSSS--------------------------S-----S-------------------------
--------SS----------------------------------------------------------------------
-------------------------------------------------S------------------------------
---SSSSSSS--S-----------------------S---------------------------S-SSSSS-------S-
S-----------------S-----------S-SS-SS-S-----------------------------------------
-------------------------------SS----S--------------S---SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_55
-----------------------------------GCAGTTAGGACCGGACCAAA-------------------------
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>reverse_2465
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----------------------------------------------------------------TAGGAAGATCCACGCC
AGGA----------------------------------------------------------------------------
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