>input_sequence_77510
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-------------------------------------------------------------ATGAACACACGCGACCTCC
TCTTCTCCGGTCTCGACCTCGTCAAGCAACAGGCGAGCGCCGTGGCCTCCACCGTCTCACTGGCCAAGCCGTACCTCCCC
GCAAAGCTAACCGAGATGAACACCGGCGACATCGTCGCCGGTCTCGGCTACGTCAAGAACCATACAGGAGCGACCGTGGC
CTCCACCGTCTCATTGGCCAATCAGTACCTGCCCGCAAGGCTTACCGGGATGAACACCGGCGACATCGTCGCAGGTCTCA
GCTACGTCAAGAACCATAC---AGCGGCCATGGTG------------------------------------------TCG
ACGCGCGACGGCGCCGTGGGGACCGCGGCGATGGTCATCGGGGGCGCCGTGGGCGCCTACTTCCTCTGGCCCGCTGCGGC
CGCCCCCGCCGCTGCCGGCGCCATGATGAAGGCGCCTGGTGCCGCCGGCTTCCTCATCTCCCGCTCGGCGTTCCTGGCCA
ACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGCGGCCGCCGCATTCGTGTAG------------
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>chr2A_1_TraesCS2A01G173800
ATATTTTGAACAGTGTAAAATGGTATTCTGAAGTTTCAAAAAATTCAAAAAAAATTCAACGTGTTCATATGAATGTATTT
ACACATGTGTAATTTCTGATGATGAAATGAGTTACACAAAAATGGAAAATATCGTAAAGATGAACAATATATTCTGCTTG
CGAGCTCATTTGAGCTCACGATGAACAGTAAAATCATAAAAAAAGGGAGTGAAACAAATATAGTCGTATAGAGTGTGCCA
CGGCTGTGTGGAAGCACGCAGGACCACCTTGTATTGATGACATTTTGCCTCTCGATGGTAAGTCCCTCAATATGGAATAA
AATTCCTTTTTCCCCAT--AAAAAGGAAAATAATTTTTAAAAAATGATGTTTTTTTGGTCTGTTTGGTTCATAAGTCCTA
GGACTTTTTTTAGTCCCAACTTATAAGCCGCAAGTCCCTAAAAAGTCCCTACCTGTTTGGTTCCCGGGACTTATAAGTCT
CTATAAGACCATATTACAACTATAAGTCTCTATAAGTTCCTCCTTAAGAGTCTTATTTCATAAGTCTCAAATGCCCATTT
TAAAACCCTATAAGTCCTTCCTATTTGGTTTAGATGAGACTTATAGAAACTTATTTAAGTCCCTAGACCAATAAGTTCCT
GGAAACAAACACCCTCTTATACAGATCTTAAACACAACGTCCTGGTCGAGGTGACTGCCTTCCGCGCCACGCCCGGGCAT
CCTGTGCTTTCGGCGAGTGGGTACGTTGGGACTTGGGACCAGCGATGGATGATATTGTCGCCTCTTTCCTCATCTTTTGA
TCCTTTTTCAT--TGGTGACATGATTAGTGCTGTATTTTTCCAACGTAAAGTCGATAGTAGTACTGTTG-----------
--GTAGTCAAGGTCGTCGTCTAGGTATAGATCACCTTCATCGTTATAAATCCACGCTTTGCGTCGTCTCGTC----GATC
TAGTGAAGTTAGTCCAGACTCCACACAGATAACCACAAGTCGGAAAGGAAAACCACGCGAGATGAACACACGCGACCTCC
TCTTCTCCGGTCTCGACCTCGTCAAGCAACAGGCGAGCGCCGTGGCCTCCACCGTCTCACTGGCCAAGCCGTACCTCCCC
GCAAAGCTAACCGAGATGAACACCGGCGACATCGTCGCCGGTCTCGGCTACGTCAAGAACCATACAGGAGCGACCGTGGC
CTCCACCGTCTCATTGGCCAATCAGTACCTGCCCGCAAGGCTTACCGGGATGAACACCGGCGACATCGTCGCAGGTCTCA
GCTACGTCAAGAACCATAC---AGCGGCCATGGTG------------------------------------------TCG
ACGCGCGACGGCGCCGTGGGGACCGCGGCGATGGTCATCGGGGGCGCCGTGGGCGCCTACTTCCTCTGGCCCGCTGCGGC
CGCCCCCGCCGCTGCCGGCGCCATGATGAAGGCGCCTGGTGCCGCCGGCTTCCTCATCTCCCGCTCGGCGTTCCTGGCCA
ACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGCGGCCGCCGCATTCGTGTAGGGAAGCAAGCAA
GCGCGCCCCTTCGATCTC--CCCCGTTTACCTTGTTTCGTGTACTCTGTTTAACTGAGAGTGTGGCTCGACTATATGGGT
GGTTCATTCCATAGTA-------CTGTGTAGCGTTTACTCCTTGCCGTGGGAGCGATCGAGAAGAT---GGGATGGTAAT
AAGCGCTGCCTTGTACTCGTATTTTCCATTGTTCTAGTCATTGTGTTCTGTTTGCGATATTATGGTG-TTTTGAAGCAAC
TGCTGGCTGCTGCTTCCTACTCCGTACTGTATTCTCAGTTCATGTGTGGAATTGTTCCTATATTGTTATATGTTATGATT
CTGTTGTCTCTTCTGTACTAATCCATCTGAATA------------------------TCCGATGGAGTACATGGTTTCGG
GAAAACCGTGGGCAGATGACTACGGATCGACGCAGAAAATACGCGGAAATCAAGGTGTAAAAGAATCTTCTTTTGCTACA
TCTAGTCACCGTAGTGCTAAGAGCAACGCTACATGCACGGGCTCTTTTTTACGGGATCAACGGACTGGCTAGATTGGCAT
GTTTTGATTGGGTAGAATTATGGTGAGGGGGCCATCCTCACTGAAAATCGGGGAGGGGGGGGGGGGGATGATTAGTTTGG
AATATGCCCGTAAAATCTAATAACCAGTTCGTGCGTTTAGAATTTTCGTAGTGCTAAAGCATTCTCATAAATAAAACTGC
TTCCTGGAAAGAGGTAAAAGAATCTTTTTCTCATCGATCTATCCAAGCTTTAGTCCTTTTCAGGATTCTGGCACAAGTGT
AACTAAGGGCATCTCCAAGGACCCATAAAACACTCGTATATGTTCGGCTGGAGACGTTTGTTTACTTTGGTAATTTAATT
GGGATCATCTATATCGGTCTATAAAGTTGTTTGGACGTTTAAATTCCGGTATTTTCCAAACAAACATGGAAATTTTTTGT
CGGAGTCCAGACATGCAGTTGACCAATCACATGCATGGTCTTTCTTCTCTCTGCTTTCAACTGGA
>chr2D_190
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-----------------------------AAAATCATAAAAAAGAAGGGGGAATAA---ATAGTCGTATAGAGTGTGCCA
CGGCTGTGTGAATGCACACAGGACCACCATGTATTGAGGACATTTTGCCTCTCGACTGTAACTGCCTCAATGTGGAATAA
AACTCCTTTTTCCCCAGCAAAAAAGGAAAATAAT-TTTAAAAAATGATGTTTTTTTTGGGTGAA----------------
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---------------CTTCTACAGATCTTAAACACAACGTCCTGGTCGAGGTGACTGCCTTCCGCGCCACGCCCGG----
----TGCTTTCGGCGAGTGCGGACGTAGGGAC-------CAGCCATGAATGATTTTGTCGCCTCTTTCCTCATCTTTGGA
TTCTTTTTCATA-TGGTGACATGATTAGTGCTGTGTTTTTCCAACGTAAAGTCGATAGTAGTACTAGTAGTACTGTTGGT
ACGTAGTCAAGGTCGTCGCCTAGGTATAGATCACATTCGTCGCTATAAATCCATGCTTTGCCTTGCTTCGTCTATCCATC
TAGTGAGGTTAGTCCAGACTCCACACAGATAACCACAAGTCGGAAAGGAAAACCAGGCGAGATGAACACCCGCGACCTCC
TCTTCTCCGGCCTCGACCTCGTCAAGCAACAGGCGAGCGCCGTGGCCTCCACCGTCTCGTTGGCCAAGCCGTACCTCCCC
GCAAAGCTAACCGAGATGAACACCGGCAACATCGTCGCGGGTCTCGGCTACGTCAAGAACCATACAGGAGCGGCCGTGGC
CTCCACCGTCTCATTGGCCAATCAGTACCTGCCCGCAAGGCTTACCGGGATGAACACCGGCGACATCGTCGCAGGTCTCA
GCTACGTCAAGAACCATAC---AGCGGCCATGGTC------------------------------------------TCG
ACGCGCGACGGCGCCGTGGGGACCGCGGCGATGGTCATCGGGGGCGCCGTGGGCGCCTACTTCCTCTGGCCCGCTGCGGC
CGCCCCCGCCGCGGCCGGCGCCATGATGAAGGCGCCTAGTGCCGCCGGCTTCCTCATCTCCCGCACGGCGTTTGTGGCTA
ACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGCCGCCGCCGCATTCGTGTAGGGAAGCAAGCAA
GCGCGCCCCTTCGATCTCT--CCCGTTTGCTTTGTTTCGTGTACTGTGTTTAATTA--AGTGTGGTTCGACTATAT-GGT
GGTTCATTCCATCTA------------GTACTGTATACTCCTTGCCGTGGGAGGGA----GAAGAC---GGGGTGATAAT
AAGCGCTGCCTCGTACTGGTATTTTTCATTGTTCTGGTCATTGTGTTCTGTTTGCTATATTATGGTGTTTTTGAAGCAAT
TGCTGGCTGCTGCTTCCTG-------CTGTATTCTCAGTTCATGTGCCGAATTGTTCCTATATTGTTA-------TGATT
CTGTTGTCTCTTCTCTAGTAGTCCATCTGAATATCCGATGGATCAGTGAACCTAATATCCGATGGAGTACATGGTTTCAG
GAAAACCGTGGGCAGATGACTACGGATCGATGCAGAAAATTCGCGGAAGTTAGGGTGTGAAAGAATCTCCTTTTGCTACA
TCTAGTCACCGTAGTGCT--------------------------------------------------------------
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-TCCTGGAAAGAGGTAAAAGAATCTTTTTCTGATCGATCTATCTAAGCT-------------------------------
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>chr2B_654
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---------------CTTCTACAGATCTTAAACACAACGTCCTGGTCGAGGTGACTGCCTTCCGCGCCACGCCCGGGCAT
CCTGTGCTTTCGGCGAGTGGGTACGTAGGGAC-------CAGCGATGAATGATTTTGTCGCCTCTTTCCTCATCTTTTGA
TTCTTTTTCATATTGGTGACATGATTAGTGCTGTGTTTTTCCAACGTAAAGTCGATAGTAGTACTGTTG-----------
--GTAGTCAAGGTCGTCGTCTAGGTATGGATCACCTTCGTCGCTATAAATCGACGCTCTGCGTCGTCTCATC----CATC
TAGTGAGGCTAGTCCAG-------ACAGATAACCACAAGTCGGAAAGGAAAACCAGGCGAGATGAACGCACGCGACCTCC
TCTTCTCCGGCGTCGACATCGTCAAGCAACAGGCGAGCGCCGTGGCCTCCACCGTCTCGCTGGCCAAGCCGTACCTCCCG
GCAAAGCTAACCGAGATGAACACGGGCAACATCGTCGCCGGTCTCGGCTACGTCAAGAACCATACAGGAGCGGCCGTGGC
CTCCACCGTTTCGTTGGCCAAGCCGTACCTCCCAGCAAGGCTTACCGGGATGAACACCGGCGACATCGTCGCAGGTCTCG
GCTACGTCAAGAACCATACGGGAGCGGCCATGGTCTCCACCGTCTCGTTGGCCAAGCCGTACCTGCCCGCAAAGCTCTCC
ACGCGGGACGGTGCCGTGGGAACCGCGGCGATGGTCATCGGGGGCGCCGTGGGCGCCTACTTCCTCTGGCCCGCTGCGGC
CGCCCCCGCCGCGGCCGGCGCCATGATGAAGGCGCCTGGTGCCGCCGGCTTCCTCATCTCCCGCACGGCGTTCCTGGCCA
ACCCGCAGGTCTACTACCAGATCCTCCGCACCGCTGGCGCCGCGGCGGCCGCCGCCGCTTTCGTGTAGGGAAGCAAGCAA
ACGCGCCCCTTGGATCTCTCCCCCGTTTGCTTTGTTTCGCGTAGTGTGTTTAATTA--AGCGTGGTTCGACTATAT-GGT
GGTTCATTCCATCTATTCTACTGCTGTATACAGTATACTCCTTGCCGTGGGAGCGA----GAGAAGATGGGGGTGATAAT
AAGCGGTGCCTCGTACTCGTGTTTGCCATTGTTCTAGCCATTGTGTTCTGTTTGCGATATT--GGTG-TTTTGAAGCAAT
TGCTGGCTGCTGGTTCCTG-------CTGTATTCTCAGTTCATGTGTCGAATTGTCCCTATATTGTTA-------T----
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SSS-S-S---SS-SSS---------------------
----------S-S----S----------S--------S-----------------SS----S-S-------S--------
--S-------------S-----------------S---------------------S-SS--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---S-------------------------------------------------------------
--------------------------S-----SSSSSSS--------S-----S--------------------------
-S--------------------------------S---------------------------------------------
--------------------------------------S---S---------------------------------S---
------S------------------------------------------------S------------------------
----------S-----------------------------------------------S---------------------
---------------------------S--------------------------------------------S-------
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----------------------------------S---------------------------------------------
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------------S---------------------------------------------------S---------------
-------------------------------------------------S------------------------------
----------------------------S-S--------------S-------S-SSS-------S----------S---
------------SSSS--------------SS--S---------------------SSSS-----S------S--S----
-----------S-------------------------------------------------------------------S
------------------SSSSSSSS---------------------S--------------------SSSSSSS-----
--------------S--S--S---------------------------------------------------------S-
------------------------------S---------S-------S-S-S-----S---------S-----------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------------------------------S-----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_472
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----------------------------------------------------CTGTTTGGTTCCCGGGACTT--------
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>reverse_2440
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---------------------------------------ATGTTCGGCTGGAGACGTTT---------------------
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