>input_sequence_77508
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---------------ATGGCAGCTCCAAGAGCTCTCGTCCTCGGCC---------TCCTGCTGGTGGTCACTGTCGCCAA
CGTCGGGGCCGCGTCCGTGGTGGTCGGCCTGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAAGGCCGAGGAAACGT
TCAAGCGTCTCCGGGTGGCGATCAAGTGCAGGAACGCCCACGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACCGC
ACCGGCGCCTTCAGCGTGCCCCTGGCCGCCGACCTCCAAGGCGCCGACTGCGTCGCGCAGCTCCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCGCTGTCCGAGGGCGCCACCACCTTCGGCGTCGTCGCCGGCG
CCAAGACCACCGCCACGCAGTCGGTGGCGTCCCCGGAGTGCGCGTCGGCCTTCTGCCCCTCGACCACGCAA---AAGAAG
CCCCGCGGCGGCGGCCACCACAAGAAGAAGCACAACCCGCACAAGCCTGAGACCAAGGCCCTGCCGTAA-----------
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---------------------------------
>chr2A_1_TraesCS2A01G062400
ATCTGCCAATTGATGGGTGACACATTAATACATATA----CTTGGCCACCTAATAACAATTGCCATAAGAAACGTCTGCA
ATGCAAGGGGACGAACAGGTTGGATATACGTTAGCACGTTTGTGTGTATACCCAAGTAAAACGCAGGATCAAGTCCAGTG
TCCATATGCTAACCTGTGTATC----TCTGTTTCTACCGAAGTCATTTCCCCTGTTCTTCTGCTCTCCACAGGACGCAAA
TCGAAAATGGGCTACAGTGCACACCACGAGCAAGGGTGGTACTTACGGTGGCTGCCTCACGTCCAGAGCAGTTATGACTC
AACCCAACATGCAAGGGACATCGCTACCAGACGAGCCAATATTCATACGAAAATTAAAGGAGACTATTCATACGAAAATT
AAAGGAGGACCCGCCCACGTGTGCGAAGTAATGTTGCGTATTTACGCTAGCGTGCG-------------AATTAGCCACC
CCGTATTGCACAATGGGCCATATTAAGTAGGAATCACGATGTGCATGTGGACGCGCGAGATTACGGCATCGCGTGCCACT
ATGTCCCAAAAATTTGCGTCCCTTTTTCGGGGAGGAATTTAGATAAACGCCAGTATGCCGACCCGGTTCATTCTTCAGAC
AGGGTTGCCAGGTCGACTCGGTTCATTGCAAGATCGACCACTGGCCAAGTCGATCACCAACCGAGTAACTGAGTGATGAC
GTGGACGATCAAATCGACGGTCGATGC--GCATGCAAGAAGTGGATCGTGCGATCAACCGACCGAG-TTTAATTCGCCAT
CTGCAAATTCGGCGCGCCACATTAGCCGGTCTCTCCTTGTCCCGCTTCACTGCGCCGGCCACCACCACCATTGGAGCATT
CAACCACATCATCCATCGAGCCG---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------TGCCGACCAATGCGGAGCGGAGGCCTATATAAGCCATGCGTCGCCTCTTCCAT
CCA----TCCATCCA--------TCCATC-------CATCGAGCTGCTACTTCACGTC----GGCAGCTCAGTGCAGAG-
-AG-AG-ATTCAGGCATGGCAGCTCCAAGAGCTCTCGTCCTCGGCC---------TCCTGCTGGTGGTCACTGTCGCCAA
CGTCGGGGCCGCGTCCGTGGTGGTCGGCCTGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAAGGCCGAGGAAACGT
TCAAGCGTCTCCGGGTGGCGATCAAGTGCAGGAACGCCCACGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACCGC
ACCGGCGCCTTCAGCGTGCCCCTGGCCGCCGACCTCCAAGGCGCCGACTGCGTCGCGCAGCTCCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCGCTGTCCGAGGGCGCCACCACCTTCGGCGTCGTCGCCGGCG
CCAAGACCACCGCCACGCAGTCGGTGGCGTCCCCGGAGTGCGCGTCGGCCTTCTGCCCCTCGACCACGCAA---AAGAAG
CCCCGCGGCGGCGGCCACCACAAGAAGAAGCACAACCCGCACAAGCCTGAGACCAAGGCCCTGCCGTAAACAGACTATGC
CACCACGCCCCTCCCACGCCCGCCTACGGAGGTGGGCACCCCTAGCCAGTGTCTCGACTCCGATCTACCACCCTCCCGCC
CAGCATTGAAATCTCCATGATTTCGTGCTATCACTCT-TGCTATTTATGATTTCAGTGTCTGCAGAACTCAGCAGAGTTC
AGAATAACACGGTTATGAGAAGGACAGACGGATCTGTGTGTTTCACAGTGTATCCTTTTTACCAATGTTTGTAATATCAG
TGTGATTTTTCTATGGGAAACAAGAAGTTATCGTA---AATCAAGTAACACAGCCGGTTTTGATGGTTCAGGGTTGAAAC
TTAGCCGGTTTAGAGTTTAGGGTTGAATCTTATAGATAGACCAAAGAGTTCAGAGATGTAATATGGTACTACCTCTGTCT
CGGTGATTAAGTCATTCACGTAGTTTTAGATTGACGATTTAACTATCTAAATATGTATTATATGTGACAAAAATATATAA
TTTAGAAACTACATCCGTGTAGAAATCTAGTGATATACTTTTCATGACATATAACACATATTTAATTCCTCAAATCGATG
ACCTAGAACTACGCAAATGACTTATTCACCGAGACAGAGGTAATACGTACTTTACAGGGCTTCCAAACGCGGCCTGCGAG
TCGTGAACATGACAAACAAGTGTTTAAGACTACAACGGGGGAACACAAAGCCATTACTACCAAGTTTCTACACCCTCAGC
TGGCGCTGTGCTTCCGTCTAGGGATGCTCGATCAAGTCCATGGCTTGCCCTTGGATACCTCTAAATGTCTGGTCGGAACT
CGGAACGTTTGTTGCAATGGTACCCTGTCAGCTAAGACCACGGATAATTGCAGGAGTGGGTGATGAACATCAAAATTACA
CAAAAATGCATGCTATTCCTCCAGTCTTAATTCTTAACTGCAGACATAGCATTCTTAACTTCAGACATAGCACCTGAGTG
CGTTATACTGTCTCTTCCTTTCAAAAAGGTAAA
>chr4B_1
ATCTGCCAATTGATGGGTGACACATTAATACATATATAGACTTGGCCACCTAATAACAATTGCCATAAGAAAAGTCCGCA
ATGCAAGGGAACGAACAGGTTGGATATAC-TCAGCACGTTTGTGCGTATACCCAAGTAAAACGCAGGATCAAGTCCAGTG
TCCATATGCTAACCTGTGTATC----TCTGTTTCTACCGAAGTCATTTCCCCTGTTCTTCTGCTCTCCAAAGGACGCAAA
TCGAAAATGAGCTATAGTGCACACCACAAGCAAGGGCGGTACTTATGGTGGCTGCCCCACGTCCAGAGCAGTCATGACGG
AACCCAACATGCAAGGGACATCGCTACCAGGCGATTCAATATTCATACGAAAATTAAATGAGACCTG-------------
------------GCCCATGTGTGCGAGGTAATGTTGGGTATTTACGCTGGCCTGCA-------------AATTGGTCACC
CCGTATTGCACAATGGGCTATATTAAGTAGGAATCATGATGTGCATGTGGACGCGCGAGATTACGGCATCGCGTGCCACC
ATGTCCCAAAAATTCACGTCC-----------------------------------------------------------
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---------------------------------
>chr1D_1
ATCTGCCAATTGATGGGTGACACATTAATACATA----GACTTGGCCACTTAATAACAATTGCCATAAGAAAAGTCTGGA
ATGCAAGGGGACGAAGAGGTTGGATATACGTCAGCACGTTTGTGCGTATACCCAAGTAAAACGCAGGATCAAGTCCAGTG
TCCATATGCTAACCTGTGTATC----TCTGTTTCTACCGAAGTCATTTCCCCTGTTCTTCTGCTCTCCACAAGACGCAAA
TCGAAAATGAGCTACAGTGCACACCGCGAGCAAGGGCGGTTCTTATGGTGGATGCCCCACGTCCAGAGCAGTTATGACCG
AACCCAACATGGAAGGGACATCGCTACCAGACGAGCCAATATTCATACGAAAATTAAATGAGACCTG-------------
------------GCCCACGTGTGCGAGGTAATGTTGCGTATGTACGCTGGCCTGCGAATTAGTCACCCCAATTAGTCACC
CCGTATTGCACAATGGGCTATATTAAGTAGGAATCACGATGTGCATGTGGACGCGCGAGATTTCGGCATCACGTGCCACT
ATGTCCCAAAAAATCGCGTCC-----------------------------------------------------------
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---------------------------------
>chr1A_1
ATCTGCCAATTGATGGGTGACACATTAATACATATATAGACTTGGCCACCTAATAACATTTGCCATAAGAAAAGTCTGCA
ATGCAAGGGAACGAACAGGTTGGATATACGTCAGCACGTTTGTGCTTATACCCAAGTAAAACGCAGGATCAAGTCCAGTG
TCCATATGCTAACCTGTGTATTCCTTTCTGTTTCTACCGAAGTTATTTTCCCTGTTCTTCTGCTCTCCATAGGATGCAAA
TCGAAAATGAGCTACAGTGCACACCACGAGTAAGGGCGGTACTTATGATGGCTGCCGCACGTCCAGAGCAGTTATGAAGG
AACCCAACATGCAAGGGACGTTGCTACCAGACGAGCCAATATTCATACGAAAATTAAATGAGACCTGA------------
-------------CCCACGTGTGCGAGGTAATGTTGCGTATTTACGCTGGCCTA-------------CCAATTGACCACC
CCGTATTGCATAATGGGCTATATTAAGTAGGAATCACGATGTGCATGTGGATGCGCGAGATTACGGCATCTCGTGCCACC
ATGTTCCAAAAATTCGCGTCCCT---------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>chrUn_651
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-------------------------------GATCGACCACCGGCCGAGTCGACCACCAACCGAGTAACTGGCCAATGAC
GTG---GATCAAATCGACGGTCGACGCATGCATGCATGCAGTGCATGGCGTGATGAGCCGACGGAGTTTTAATTCGGCAT
CTGCAAATTCGGCGCGCCAAATCAGCCGG---------------------------------------------------
--------------------------------------------------------------------------------
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-------TCTCTCCTTGTCTCGCTTCACTGCGCCGATCGACGGCCGACCACCACCACCATTGGAGCATTCAACCAGATCG
TCCA---------TCGAGCTGTGCCGCTGCCGACCAATGCGGAGCGGAGGCCTATATAAGCCATGCGTCGCCTCT-----
-------TCCATCCA--------TCCATC-------CATCGAGCTGCCACTTGACGCCAGCAGGCAGCTGAGTTCAGAG-
-AGGAG-ACTCGAACATGGCAGCTCCGACAGCATTCTTCCTCGGCGTTTGCGCGGTGCTGCTGGCGGCCGCCGTCGCCAA
CGCCGACGCGGCTTCCGTGGTGGTCGGCCTGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAAGGCCGAGGAAACGT
TCAAGCGTCTCCGCGTGGCGATCAAGTGCAGGAACGTTGAGGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACCGC
ACCGGCGCCTTCAGCGTGCCCCTGGCCACCGACCTCCACGGCGCCGACTGCGTCGCGCAGCTTCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCACTGTCCGAGGGCGCCACCACCTTCGGCGTCGTCGCCGGCG
CCAAGACCACC---------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>chrUn_651
--------------------------------------------------------------------------------
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-------------------------------GATCGACCACCGGCCGAGTCGACCACCAACCGAGTAACTGGCCAATGAC
GTG---GATCAAATCGACGGTCGACGCATGCATGCATGCAGTGCATGGCGTGATGAGCCGACGGAGTTTTAATTCGGCAT
CTGCAAATTCGGCGCGCCAAATCAGCCGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------TCTCTCCTTGTCTCGCTTCACTGCGCCGATCGACGGCCGACCACCACCACCATTGGAGCATTCAACCAGATCG
TCCA---------TCGAGCTGTGCCGCTGCCGACCAATGCGGAGCGGAGGCCTATATAAGCCATGCGTCGCCTCT-----
-------TCCATCCA--------TCCATC-------CATCGAGCTGCCACTTGACGCCAGCAGGCAGCTGAGTTCAGAG-
-AGGAG-ACTCGAACATGGCAGCTCCGACAGCATTCTTCCTCGGCGTTTGCGCGGTGCTGCTGGCGGCCGCCGTCGCCAA
CGCCGACGCGGCTTCCGTGGTGGTCGGCCTGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAAGGCCGAGGAAACGT
TCAAGCGTCTCCGCGTGGCGATCAAGTGCAGGAACGTTGAGGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACCGC
ACCGGCGCCTTCAGCGTGCCCCTGGCCACCGACCTCCACGGCGCCGACTGCGTCGCGCAGCTTCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCACTGTCCGAGGGCGCCACCACCTTCGGCGTCGTCGCCGGCG
CCAAGACCACCGCCACGCCGTCGGTGGCGTCCCCGGAGTGTGCGTCGGCCTTCTGCCCCTCGACCACGCCCTGGAAGAAG
CCCCGCGGCGGCGGCCACCACAAGAAGAAGCACAACCCGCACAAGCCGGAGACCAAGGCCCTGCCGTAAACAGAACTCCA
TCCGACTC------------------------------------------------------------------------
---CATTGAAATCCCCATGATTTCGTTCTGTCACCGTGTGCTATTTACGATTTCAGTGTCTGCAGAACTCACCGTGT---
-----------GTTATGAGAAGGACAGACGGATCTGCGTGTGTCACGGTGTATCCTTCTTACCAGTGTTTGTAATATCAG
TGTGATTTTTCTACGGGAAACAAGAAGTTATCGTAATAAATCAAGTAATATATCCGGTTTTGATGGTTCAGGGTTGAAAC
TTAGCCGGTTTAGAGTCTAGGGTTGAATCTTATAGATAAACCAAAGAGATCAGAGCTATAATATGGTACT----------
--------------------------------------------------------------------------------
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---------------------------------
>chrUn_651
--------------------------------------------------------------------------------
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-------------------------------GATCGACCACCGGCCGAGTCGACCACCAACCGAGTAACTGGCCAATGAC
GTG---GATCAAATCGACGGTCGACGCATGCATGCATGCAGTGCATGGCGTGATGAGCCGACGGAGTTTTAATTCGGCAT
CTGCAAATTCGGCGCGCCAAATCAGCCGG---------------------------------------------------
--------------------------------------------------------------------------------
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-------TCTCTCCTTGTCTCGCTTCACTGCGCCGATCGACGGCCGACCACCACCACCATTGGAGCATTCAACCAGATCG
TCCA---------TCGAGCTGTGCCGCTGCCGACCAATGCGGAGCGGAGGCCTATATAAGCCATGCGTCGCCTCT-----
-------TCCATCCA--------TCCATC-------CATCGAGCTGCCACTTGACGCCAGCAGGCAGCTGAGTTCAGAG-
-AGGAG-ACTCGAACATGGCAGCTCCGACAGCATTCTTCCTCGGCGTTTGCGCGGTGCTGCTGGCGGCCGCCGTCGCCAA
CGCCGACGCGGCTTCCGTGGTGGTCGGCCTGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAAGGCCGAGGAAACGT
TCAAGCGTCTCCGCGTGGCGATCAAGTGCAGGAACGTTGAGGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACCGC
ACCGGCGCCTTCAGCGTGCCCCTGGCCACCGACCTCCACGGCGCCGACTGCGTCGCGCAGCTTCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCACTGTCCGAGGGCGCCACCACCTTCGGCGTCGTCGCCGGCG
CCAAGACCACCGCCACGCCGTCGGTGGCGTCCCCGGAGTGTGCGTCGGCCTTCTGCCCCTCGACCACGCCCTGGAAGAAG
CCCCGCGGCGGCGGCCACCACAAGAAGAAGCACAACCCGCACAAGCCGGAGACCAAGGCCCTGCCGTAAACAGAACTCCA
TCCGACTC------------------------------------------------------------------------
---CATTGAAATCCCCATGATTTCGTTCTGTCACCGTGTGCTATTTACGATTTCAGTGTCTGCAGAACTCACCGTGT---
-----------GTTATGAGAAGGACAGACGGATCTGCGTGTGTCACGGTGTATCCTTCTTACCAGTGTTTGTAATATCAG
TGTGATTTTTCTACGGAAAACAAGAAGTTATCGTAATAAATCAAGTAATATATCCGGTTTTGATGGTTGAGGGTTGAAAC
TTAGCCGGTTTAGAGTCTAGGGTTGAATCTTATAGATAAACCAAAGAGATCAGAGCTATAATATGGTACT----------
--------------------------------------------------------------------------------
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---------------------------------
>chr2D_651
--------------------------------------------------------------------------------
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-------------------------------GATCGACCACCGGCCGAGTCGACCACCAACCGAGTAACTGGCCAATGAC
GTG---GATCAAATCGACGGTCGACGCATGCATGCATGCAGTGCATGGCGTGATGAGCCGACGGAGTTTTAATTCGGCAT
CTGCAAATTCGGCGCGCCAAATCAGCCGG---------------------------------------------------
--------------------------------------------------------------------------------
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-------TCTCTCCTTGTCTCGCTTCACTGCGCCGATCGACGGCCGACCACCACCACCATTGGAGCATTCAACCAGATCG
TCCA---------TCGAGCTGTGCCGCTGCCGACCAATGCGGAGCGGAGGCCTATATAAGCCATGCGTCGCCTCT-----
-------TCCATCCA--------TCCATC-------CATCGAGCTGCCACTTGACGCCAGCAGGCAGCTGAGTTCAGAG-
-AGGAG-ACTCGAACATGGCAGCTCCGACAGCATTCTTCCTCGGCGTTTGCGCGGTGCTGCTGGCGGCCGCCGTCGCCAA
CGCCGACGCGGCTTCCGTGGTGGTCGGCCTGGCCAAGTGCGCCGGCTGCACCAGGAAGGACATGAAGGCCGAGGAAACGT
TCAAGCGTCTCCGCGTGGCGATCAAGTGCAGGAACGTTGAGGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACCGC
ACCGGCGCCTTCAGCGTGCCCCTGGCCACCGACCTCCACGGCGCCGACTGCGTCGCGCAGCTTCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCACTGTCCGAGGGCGCCACCACCTTCGGCGTCGTCGCCGGCG
CCAAGACCACCACCACGCCGTCGGTGGCGTCCCCGGAGTGTGCGTCGGCCTTCTGCCCCTCGACCACGCCCTGGAAGAAG
CCCCGCGGCGGCGGCCACCACAAGAAGAAGCACAACCCGCACAAGCCGGAGACCAAGGCCCTGCCGTAAACAGAACTCCA
TCCGACTC------------------------------------------------------------------------
---CATTGAAATCCCCATGATTTCGTTATGTCACCGTGTGCTATTTACGATTTCAGTGTCTGCAGAACTCACCGTGT---
-----------GTTATGAGAAGGACAGACGGATCTGCGTGTGTCACGGTGTATCCTTCTTACCAGTGTTTGTAATATCAG
TGTGATTTTTCTACGGGAAACAAGAAGTTATCGTAATAAATCAAGTAATATATCCGGTTTTGATGGTTCAGGGTTGAAAC
TTAGCCGGTTTAGAGTCTAGGGTTGAATCTTATAGATAAACCAAAGAGATCAGAGCTATAATATGGTACT----------
--------------------------------------------------------------------------------
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---------------------------------
>chr2B_765
--------------------------------------------------------------------------------
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--------------------------------------------------------------------TTAATTCGCCAT
CAGAAACTTCGGCGCGCCGAA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------AGCGAAT
TAGCTCATCTCTCCTTGTCTCGCTTCACTGCGCCGGCCACCATTCTT------CCTTCTTCTGCGCTTGCAGACAGATCG
GCCGGTTGAGCATTCGAGCTGTGCCGATCAAC-----------GCGGAGGCCTATATAAGCCATGCGTCGCCTGT-----
-------TCCATCCA------------TC-------CATCGAGCAGCCACTTCACACAGGCAAGCAAGTGGT--------
-AG-AG-GTTGAGCCATGGCAGCTCCGAGAGCAGTCGTCCTCTGCGT---------CCTGCTGGCGGTCGCCGTCGCCAA
CGCCGAGGCGGCGTCGGTCATCGTCGGCCTGGCCAAGTGCGCCGACTGCACCAGGAAGAGCATGAAGTCCGAGGAAGCCT
TCAAGGCTCTGCAGGTGGCGATCAAGTGCAAGAACAGCGCTGGCGAGTACGAGAGCAAGGCCGTGGGCGCCCTCAACGGC
ACTGGCGCTTTTAGCGTGCCCCTGGCCGCCGACCTCCACGGCGCCGACTGCGTCGCGCAGCTCCACAGCGCGTCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCGGTGTCCGAGGGC---AGCACCTACGGCGTCGTCGCTGGCG
ACAA---CACCGCCACGCCGTCCGCGGCGTCGCCGGAGTGCGCGT-----------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>chrUn_872
TCGAGCTGTGCCGATCAGCGCGGACGCCTATAAAAGCCATGCGTCGCCTGTTCCATCCACTAATCCATCCATCGATCGAG
CAGCCACTTCACACCAGCTAGTGGAAGTAGTGCGATCCAGAGGTTCAGGCATGGCAGCTCCGAGAGCACTCGTCCTCTGC
GTCCTGCTGGCGATCGCCGTCGCCCACGCCGAGGCGGCGTCAGTCGTCGTCGGTCTGGCCAAGTGCGCCGACTGCACCAG
GAAGAACATGAAGGCCGGGGAAGCCTTCAAGGCTGTGCAGGTGGTGATCAAGTGCAAGAACAGCGCCGGCGAGTACGAGA
GCAAGGCGGTGGGCGGCCTCGATGGCACCGGCGCCTTCAGCGTGCCCCTCGTCGCCGACCTTCATGGCGCCGACTGTGTC
GCGCAGCTCCACAGCGCCGCCTCCAACGCGCCCTGCCCCGGCCAGGAGCCGTCCAAGATTGTGCCGCTGTCCGAGGGCAC
CACCTTCGGCTTCGTCGCTGGCGAGAACACCGCCACGCCGTCCGCGGCATCGCTGGAGTGTGCGTCCATGACCCTGTGCG
GGCCGATCAAGAAGCACATCATCGAGCACTTCCACCACAAGAAGCCCGTGCCGCCCAAGCCGGAGCTCAAGCCCCAGCCC
CACCCGGACTACGGCCCCATGCCTAAGCCGGAGCCGAAGCCGCAGCCCCACCCAGACTACCACCCCGTCCCTCCCACGCC
CACCTACGGTAGCGGTGGCGGCGGTGGTAGATACCACGGGCACCACTGAGTCAGTTCTACCCCCGTCCTGCCCAGCGATG
AAATCTCATCATCAGCGGGTTGGTGATCAGTGAGTGGTGGACGGTGCTAATTATGATTGGTTTGCATGCGTGGGTATCGT
TAGGTCTTCTGCCATTCCCGCGAAGCCCCGTTTATTATCTGCACTGCAGAGTTGGGAGTTCAGAATAACAGATGTGCGTG
TGTGTGTCGCTGTGTCAGGCGAGTGTGAGGGTGTGTTGGTGTGTTGCTTTATCAAGATTTTGTAATTTCAGTGTGTGTTT
TGTATAAGAAGTTATTATGAATCAAGTAATTTAACCAAGTCGATTTGTCAGCCGAACAACTGCAGCTGTTCGAGACGATT
GGCATGATAAAGATAGTGTGATTTTACTTCAACTCAATTTTCAGATCCGTGAACTGAAACTGAAGTGAAATNNNNNNNNN
NCATTGACTGAGCTTGAAAAAAGAAATTAAGCAATCGTGGTTTGTACTGGAAGTTGCTACGTGCTGCTGTTGCTGTAGTG
AGTTTCTCAACGATTCGAGCTTCCGCGCCAAAGATGCATGTTTGTATTTGTTTTTAAATAAAAAAATCGATCACCAAGGC
ACCAACCGAACAATGACGTGGATCAAAACGACGACCGATATTAATTCGGCATCACAAACTTCGGCGCGCCGAAAGCGAAT
TAGCTCATCTCTCGTTGTCTCGCTTCACTGCGCTT-------------------CTTCTTCTGCGCTTGCAGACAGATCA
GCCGGTTGAGCATTCGAGCTGTGCCGATCAGC-----------GCGGACGCCTATAAAAGCCATGCGTCGCCTGTTCCAT
CCACTAATCCATCCA------------TC-------GATCGAGCAGCCACTTCACACCAGCTAGTGGAAGTAGTGCGATC
CAG-AG-GTTCAGGCATGGCAGCTCCGAGAGCACTCGTCCTCTGCGT---------CCTGCTGGCGATCGCCGTCGCCCA
CGCCGAGGCGGCGTCAGTCGTCGTCGGTCTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGAAGGCCGGGGAAGCCT
TCAAGGCTGTGCAGGTGGTGATCAAGTGCAAGAACAGCGCCGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGATGGC
ACCGGCGCCTTCAGCGTGCCCCTCGTCGCCGACCTCCATGGCGCCGACTGCGTCGCGCAGCTCCACAGCGCCGCCTCCAA
CGCGCCCTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCGCTGTCCGAGGGC---ACCACCTTCGGCTTCGTCGCTGGCG
AGAA---CACCGCCAGGCCGTCCGCGGCATCGCTGGAGTGCGCGTC----------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>chr2D_899
--------------------------------------------------------------------------------
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----------------------------------------------GAGGCCTATAAAAGCCATGCGTCGCCTGT-----
-------TCCATCCACTCGTCCATCCATC-------GATCGAGCAGCCACTTCACACCAGCAAGTGGCAGTAGTTCGATC
CAG-AG-GTTCAAGCATGGCGGCTCCGAGAGCACTCGCCCTCTGCGT---------CCTGCTGGCCATCGCCGTCGCCAA
TGCGGAGGCGGCGTCCGTGGTCGTCGGCCTGGCCAAATGCGCCGACTGCACCAGGAAGAACATGAAGGCCGAGGAAGCCT
TCAAGGCTCTGCAGGTGGCGATCAAGTGCAAGAACAGCGCCGGCGAGTACGAGAGCAAGGCCGTGGGCGCCCTCGACGGC
ACCGGCGCCTTCAGCGTGCCCCTCGCTTCTGACCTTCATGGCGCCGACTGCGTCGCTCAGCTCCACAGCGCCGCCTCCAA
CGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCGGTGTCTGACGGC---ACAACCTACGGCGTCGTCGCCGGCG
AGAA---CACCGCCACGTCGTCCGCGGCGTCGCCCGAGTGCGCGTC----------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>chr2A_902
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------GCCTATATAAGCCATGCGTCGCCTGT-----
-------TACATCCACTCATCCATCCATCCACCATTCATCCATCAGGCACTTCACACCAGCAAGTGGCAGTAGTGCGATC
CACACAAGTTTAGGCATGGCGACTCCGAGAGCACTCGCCCTCTGCGT---------CCTGCTGGCGATGGCCGTCGCCAA
CACCGAGGCGGCGTCAGTCGTCGTCGGCCTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATGCAGACCGAGGAAGCCT
TCAAGGCTGTGCAGGTGGCGATCAAGTGCAAGAACAGCGCCGGCGAGTACGAGAGCAAGGCGGTGGGCGGCCTCGACGGC
ACCGGCGCCTTCAGCGTGCCCCTGGCTGCCAACCTCCACGGCGCCGACTGCGTCGCTCAGCTCCACAGCGCCGTCTCCAA
CGCGCCCTGCCCCGGCCAGGAGCCGTCCAAGATCGTGCCGGTGTCCGAGGGC---ACCACGTACGGCGTCGTCGCTGGCG
AGAA---CGCCGCCACGCCGTCTGCCGCATCGCCGGAGTGTGCGTC----------------------------------
--------------------------------------------------------------------------------
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---------------------------------
>SNPs
--------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S--------S----------S---------------------SS
----------------------------------------------------------S------SSSSSSSSSSSSS-S
SSSSSSSSS-S---------------S---------------------S--S----------------------------
------------------S-------------------------------------------------------------
--------------S--------SSSSSSSSSSSSS-SSSSS-SSSSSSS-S-SSSSSSSSSSS-S-SS-SS-SSSSSS-
SSSSSS-S-SSSSSSS-SSS-SSS-SSS-SS----------S----S------S-----------------SSSS-----
---SSS------------------------------S-S----S--S-S-S---S-S-----------------------
-------------------S--S------SSSSSSSS--SS-S-SSSS-S-SSSSSSSSSSSSS-SSS-S-S--SSSSS-
S-SSSSSSSSSS-SS--SS--SS---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------S------------S---S------
--------------------------S-----S------------S------------------S----S-S--------
--S--S---S----------------------------------------------------------------------
------------------------------------S-S-----------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
------------------S--------------------------------------------------SS---------
-----------------------------------------------S--------------------------SSSSSS
SS-S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------S------------S--S----SS-----------S-----------------------S-SSSSSSS
SSSSSSSSSSS-------------------------S----S----S----------S------S---------------
-------------S----------------------------------S-S-S---------------------------
----------------S---------------------S---------S------S-S------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1648
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CATCCATCCATCGAGCTGCT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
>reverse_2875
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGCGAG
TCGTGAACATGACA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------
