>input_sequence_77490
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-------------------------------------------------------------------ATGGAGAAGGCCA
CACAAACACAAGGGCATCTG---GGCAACGGATCGGTGGAGAAGCCATCGCTCACCTTCGAGTTGGTATCGCAGTTTTTC
TGCATGCCGATCCATGAGGCGGCGCGGGAGCTCGGTGTGGGGATGACGCTTCTGAAGAAGAGATGCAGGGAGCTCGGGAT
CCGCCGGTGGCCGGCGCGCAAGGTGAGAAGTCTACAGAAGGTCATCGCTGATGTTAAGGTGCTCTCCCTGTT--------
------------ACAACTCTTCTAACACTCCTGATTTC--TTCAGCATACGTTTACAAATCTGCAAG-GTAGGTGAGTAC
CAATGTCATGTCCTGCAGGAGCTCGGGAATGAAGGCACCCTGGAAAGGGCAGGGCAAACTAAGATCCTGGTGCGGAAGTT
GCAGCAGGAGATGAAACTGATTGTGGAGAGACCTGATGTTCAGCTGGATGAGAAGACGAAGGAGTTTAGGCAAGCATGTT
ACAAGGAGATGTATTGCCGCCGAAGAAAGAGGAAACTCGGTAAGGTTCTTGATTAA------------------------
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>chr6A_1_TraesCS6A01G307600
CAAATGTAACTATAACAGTTCTAAGGTGACAAAATTCGTTGTAAGATAAGTACCGACCCACATGAAAGACATAAAGATCT
GGGTACTATCTCAAAGAGACGGTGCAAAAACCTGTGTAAAAGAGAAATATAGCGCTTGGTGTAATGGCCAGGGCAAAAAT
ACATTGCTTAAAGTGGCCGAGATATCCAACTACATTTTTTTTCATGACAAATGGTGCTTTTATTAACTTAAAATGTAGCA
TCAAGAGGATAAAACTCATAATGAGCATATACCCATTCTCTACATGACTAGGATGCATACAACCAAGACAATTAGAAGTA
CAAAAATATAAAAGACGTCAGTCAACAATAAAGTCGTTCATGACCCAAACCATGCCTATGACAACGAATGTGGGAGGCAT
ATCCGTAGACTATGCCGCCACTCATATGGGGTAAATATATCCTTCACCACCTGCTCCAAGAGTGTACACATCATTGTAAC
ATTGATTGGTGCTGCAAAAAACCTAGAGTAAAACCACAAACGAAGTTAGTGCGTATACGAGTAGATAACCTGCATAGGAG
ATGAATTTGTACCATTAAACACCATGTCCACCATGCTATAGCTGGCGTTCAGACTTTGTTAAGCATTTTT----TTGT--
TTCTATTTAATTATAGTATTTCAAACAATATATACTGGTAATATCAATTGTTTTGAATATATCCAACGATGTTAATTATA
CGTCGTATAATTTATACTCAAG-AATATGTGGAATTTGAATTTTATATTAGTATAATTGTTGGTCAAACTTAGTTCTTGG
AATATGTATATTATGCCATAAATCTGAAACAAAAAAGTAAAAGGAGATGAGAAAGCTTCCTAGTCTCATTGGACGTTTGA
CCCAATGAGTCAATACAATTACCAAGGCGTGCAGTAATTCCT--AGTGCCT------CGTGCAAATCCATCGGCACTATA
AGGAGTCACCTTTCACACACTAGGTACTACAGGTCAGCAGCAGTGCCAT------------CACGCCATGGAGAAGGCCA
CACAAACACAAGGGCATCTG---GGCAACGGATCGGTGGAGAAGCCATCGCTCACCTTCGAGTTGGTATCGCAGTTTTTC
TGCATGCCGATCCATGAGGCGGCGCGGGAGCTCGGTGTGGGGATGACGCTTCTGAAGAAGAGATGCAGGGAGCTCGGGAT
CCGCCGGTGGCCGGCGCGCAAGGTGAGAAGTCTACAGAAGGTCATCGCTGATGTTAAGGTGCTCTCCCTGTT--------
------------ACAACTCTTCTAACACTCCTGATTTC--TTCAGCATACGTTTACAAATCTGCAAG-GTAGGTGAGTAC
CAATGTCATGTCCTGCAGGAGCTCGGGAATGAAGGCACCCTGGAAAGGGCAGGGCAAACTAAGATCCTGGTGCGGAAGTT
GCAGCAGGAGATGAAACTGATTGTGGAGAGACCTGATGTTCAGCTGGATGAGAAGACGAAGGAGTTTAGGCAAGCATGTT
ACAAGGAGATGTATTGCCGCCGAAGAAAGAGGAAACTCGGTAAGGTTCTTGATTAATGACGGGGATGTAGACCATGTTAT
TTCCTGTTGTCCGTCTTGAAAAGGTTCTAGTGCACTTCGAAATAACATACTCCATCTGCCCGCATACACGTTTTGTTTAC
TCAAGTTCAAGGTTATGACTAGCCCTCTAGATGAGAATTAACTGGGTCACATCTACTCCTTCCGTTCCTAAATATTTATC
TTTTTAGATATTTCAAATGAAATACTGCATACAGATGTATATAAATATATTTTAGAGTGTAGATTCACTCATTTTGCTTC
GTATGTAGTCACTTGTTAAAATATCTAAAAAGACAAATATTTAGGAACGGAGGGAGTAACAACTACACCATTTGATTT--
----TACACCAAGATGCATGCGAATTTTTTCTTTTCTTTTCTTTGTTTGATTAATCAAATGATGTAGGAGTTACTTCCTC
CGTTTCAAAATATAGCGTGTATAGATTTTTTTTTCAAAAGTCAAACTTGTAGAGTTTGACCAAGTTTATAGAGAAAATTA
GTTATATCTACAATATAAAATATAAAAAATATGAAACTACATCTTATGATGAATTTGATGATATATGTTTGACGTTCTAG
ATGTAAATATATTTGTTACAAACTTAGTCAAAGTTTGTGTGAATTGACTTTTCAAAAAGTATATGCACTACATTATAAAA
TGGAGGGAGTAGATAAGACATCGTTATTTCTCACCAAAGATGAGAATTAGCAAATCTGCTATTTCAACCTTTGACCATAA
ATTTCGTGTACGCTGTTTTGTCAATAGTTAACAATCAGAGTCATCTTCGGTTTTGGTTTTCTGGAATTATTGGATACTAC
AAATGTTGTGTCATATAAATCACATACATATTATCAAATTAATAGTGGGTTAAAGCTCGAACATTGGCAAACAAAATACA
TCTTGCATATATCCATACAAATAGAGTACAAAATATAGTCACGAGTAAACACCAAACATTTGTGAGGTAATCACTCAAGT
GTTTTTTCACCCCTTTTTTTGT
>chr6B_2
-AAATGTAGCTATGACGGTTCTAACGTAACAAAATTCCTTGTAAGATAAGTTCTGACCCACATGAAAGACATAAAGATGT
GGGTACTATCTCAAAGAGACGGTGCAAAAACCCGTGTAAAAGAGAAATATAGCGCTTGGTGTAATGGCCACGGCAAAAAT
ACATTGCTTAAAGTGGCCAAGATACTCAACTACA-TTTTTTTCCTGATAAATGACGCTTTTATTAACTTCAAATGTAGCA
TGAAGAGGATAAAACTCATAATGAGCATATACTCATTCTCTACATGACTAGGATGCACACAACCAAGACAATTAGGGA-A
CGAAAATATAAAAGGCGCCAGTCAACAACAAAGTCGTTCATGACCGAAACCATGCCTATGACAAGGAATGTGGGAGGCAT
ATCCGTAGACTATGCCGCCACTCATGTCGGGTAAAAATATCCTTCACCACCTGCTCCAAGAGTGTACACACCATCATAAC
ATTGATTGGTGTTGCAAAAAACCTAGAGTAAAACCATAAACGAAGCTAGTGCGTATACGAGTGGATAACCTGCATAGGAG
ATGAATTTGTACCATTAAACACCATGTCCACCATG---------------------------------------------
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>chr6D_3
--AATGTAACTATAACGATCCTAAGGTAACAAAATTCCTTTTAAGATAAGTTCCGACCCACATGAAAGACATAAAGATGT
GGGTACTATCTCAAAGAGACGGTGCAAAAAACCGTATAAAAGAGAAATATAGCGCTTGGTGTAATGGCCACGACAAAAAT
ACATTGCTTAAAGTGGCCGAGATACCCGAGTACA--TTTTTTCCTGATAAATGGCGCTTTTATTAACTTAAAGTGTAGCA
TCAAGAGGATAAAACTTATAATGAGCATATACACATTCTCTACATGACTAGGATGCACACAGCTGATACAATTAGGAGTA
CGAAAATATAAAAGACGTCAGTCAACAACAAAGTCATTCATGACTGAAACCATGCCTATGGCAAGGAATGTGGGAGGCAT
ATCCGTAGACTATGCCGCCACTCATGTGGGGTAAAAACATCCTTGACCAC---CTCCAAGAGTGTACACACCATCGTAAC
ATTGATTGGTGCTGTAGAAAACCTAGAGTAAAACCACAAACGGAGCTAGCAC-TACACGAGTAGATAACCTGCATCGGAG
ATTAATTTGTACCATTAAACACCATGTCCACAATGCTACACGTGGTGCCCAGGCTTCATTAAGCAATTTTTTTGTTGTGC
TTCTGTTTTAATATGGCATTTCGAACAATATATACCGATAATAGAAATTATTTTGAATATATCTAATGGTGTTAATTATA
TGTCGCATAATTCATAATTTAG-AATATGTATAATTTGAATTTTATTGAGG--TAATTGTTGGTCGAACTTAGTTCTTGA
AATATGTGTATTATGCCATAAATCTGAAACAAAGAAGTAAAAGG-GATGAGAAAGGTTCCTAGTCTCATTGGACGTTTGA
CCCTATGAGTCAATACAATTACCAAGGCGTGCAGTAATTCT---AGTGCCCCGTCCCCGTGTAAACCCATCGGCACTATA
AGGAGTCACCTTTCACACCCTAGGTACTACAGGTCAGCAGCAGTGCCATCTCTTGAACGCACACGCCATGGAGAAGGCCA
CACAAACACAAGGGCATCTG---GGCAACGGATCGGTGGAAAAGCCATCGCTCACCTTCGAGTTGCTGTCGCATTTTTTC
TGCATGCCGATCCATGAGGCGGCGCGGGAGCTCAATGTGGGGATGACGCTTCTGAAGAAGAGATGCAGGGAGCTCGGGAT
CCGCCGGTGTTCGGCGCGCAAGGTGAGAAGTCTACAGAAGGTCATCGATGATGTTAAGGTGCTCTCCCTTTT--------
------------ACAACTCTTCTAGCACTCATTTG-----TTCAGCATACGTTTGCAAATCTGCAAG-GTAGGTGAGTAT
CAATGTCATGTCCTGCAGGAGCTCGGGAATGAAGGCACCCCGGAAAGGGCTGGGCAAACTAAGATCCTGGTGCGGAAGTT
GCAGCAGGAGATGAAACTGATTGTGCAGAGACCAGATGTTGAACTGGATGAGAAGACGAAGGAGTTTAGGCAAGCATGTT
ACAAGGAGATGTATGTCCGCCGAAGAAAGGGGAAGCACGGTAAGGTTCTTGATTAATGACGGGGATGTAGACCGTGTTAT
TTCCTGTTGTCCGTCTTGAAAAGGTTCCAGTGCACTTCGAAATAACATACTCCATCCGCCCGTATACACGTTTTGTTTAC
TCAAGTTCAAGGGTATGACTAGCCCTCTAGATGAGAATTAACTAAGTCACAT----------------------------
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-------------------------------------------------------GTAACAACTACATCATTTGATTTGT
TTTTTACATGAAGATGCATGCGATTTTTTTCTTTTCTTTTCCTTGTTTGATTAATCAAATTATGTAGGAGTTACCCCCTT
CGTTCAATAATATAGTTTGTATGGATTTTTTTGAAAAGTCAACCT-TTGTAGAGTTTGACCAAGCTTATAGAGAAAAATA
TTTATATCTACAATATAAAATATATAAAATATGAAACTACATCTTATGATGAATCTAATGATATATGTTTGACATTCTAC
ATGTAAATATTTTTTTCAA----------------------------------AAAATCTATATGCACTACATTATGAAA
TAAGGAGAGTCGATGAGACTTCGTTATTTCTCAGC-AAGATGAGAATTAGCAAATCTGCTATTTTAACCTTTGACCATAA
ATTTTGTGTACGCTGTTTTACCAATAGTTAACAATCACAGTCATATTCGGTTTTGGTTTTCTGATATTATTGGATACTAC
AAATGTTGTGTCATATAAATCACATACATATTATCAGATTAATAGTGGGTCAAAGCTCCAACATTGGCAAACAAAATACA
TCTTGCAC--ATCCATACGAATAGAGTACAAAATATAATCACGAGTATACACCAAACATTTGTGAGGAAATAACTAAAGT
GTTTTTTCACCCTTT-------
>chr6D_4
---ATGTAACTATAACGGTCCTAAGGTAGCAAAATTC-TTGTGAGATAGGTTCCGACCCACACGAAAGGCGTAAAGATGT
GGGCACTATCTCGAAGAGTGTGAAAAACATAGTGTA-AAGAGAGAAACACAATGGTTGGTGTAGTGGCCACGACAAGAAT
ACATTGCTTAAAATGGCCGGGATACCAGACTACA-TATTTTCCTTGATAAATGATACTTTTATTAACTTAAAATGTAGCA
TCAAGAGGACAAAACTCATAATGAGCATATATCCATTCTCTACAAGACTAGGATGCACAGAACCAATAAAATTAGAAGTA
CGAAAATATAAAAAACGCTAGTCAACAACAAAGCCGTACATGACCGAAACCATACCTATAGCAAGGAGGGTGGGCGGCAT
ATCCATAGACTATGCCCCCACTTATGTGGCGTAAAAACATCCATGACCACCTGCTCTAAGAGTGTACACACCGTCGTAAC
ATTAATCGGTGCTCCAGAAAACCTAGAATAAA-CCACAAACAGAGTTGGTGTGTACATGGGTAGATAACATGCATAGGAG
ATGAATTTGTACCATTAAACACCATGTCCACCATGATATGCCGGGTGCCCAGGCTCCATTAAGCATTTTT----TTGTGC
TTCTGTTTTAATATGGAATTTCGAAAAATATATACTGATAATAGAAATTGTTTTGAATATACGCAATGATGTTAATTATA
TGTCACATGACTTATACTATAAAAATATTTATAATTTGAATG--ATATTATTATTTTTGTTGGTCAAACTTAATTCTTGA
AGTGTGTGTGTTATGCCATAAATCTGAAACAAAGGAGTAAA-GGAGGTAAGAAGGCTTCCTAGTCTCATTGGACCTTTGA
CCCTATGACTCAATACAATTACCAAGGCGTGCAGTAATTCCG--AGTGTCCCGTCCCCGTGTAAACCCATCGGCACTATA
AGAAGTGACCTTTCACACGGTAGGTACTACAGGTTAGCAGCAGTGCCATCTCTTGAACGCACACGCCATGGAGAAGGCCA
CACAAACACAAGGGCATCTGCTGGGCAACGGATCGATGGAGAAGCCATCGCTCACCTTCGAGTTGGTGTAGCAGTTTTTC
TGCATGCCGATCCATGAGGCGGCACGGGAGCTCAATGTGGGGATGACGGTTCTGAGGAAGAGATGCAGGGAGCTCGGAAT
CCAGCGATGGCCGGGGCGCAAAGTGAGATGCCTGCAGAAGGTCATCGGTGATGTTAAGGTGCTCTCCCTTTT--------
------------AAAACTCTTTGGGCACTCTCCGATCTATTTCAGCATTCGCATGCAAGTTTGCAAG-GTAGCTGACTAT
CAATTTCATGTCCTGCAGGAGCTCTGGAATGACGGCACCCCGGAAAGGGTAGAGAAAACTAAGATAGTAGTGCAGAAGTT
GCAGCAGGAGATGAAACTGCTTGTGGAGAGACCCGATGCTGAACTGGATGAGAAGGCGAGGCGGCTTAGGCTAGC-----
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>chr6B_589
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----------------------------CACCATGTTATAGCTGGCGTTCAGACTTCATTAAGCATTTTTTGTTGTAT--
TTCTGTTTTAATATGGTATTTCAAACAATATATACTGATAATAGAAATTGTTTTGAATATATCCAATGGTGTTAATTAT-
-GTCGCATAATTCATACTCTAG-AATAAATGTAATTTAAATTTTATTGGTG--TAATTGTTGGTCAAACTTAGTTCTTGG
AATATGTGTATTATGCCATAAATCTGAAACAAAAGAGTAAAAGGAGATGAGAAAGCTTTCTAGTCTCATTGGACGTTTGA
CCCTATGAGTCAATACAATTACCAAGGTGTGCAGTAATTCCTCTAGTGCCT------CGTGTAAAACCATCGGCACTATA
AGGAGTCGCCTTTCACACGCTAGGTACTACAGGCGAGCAGCGGTGCCATCTCTTGAACCCACACGCCATGGAGAAAGCCA
CACAAACAGAAGGGCATCT---GGGCAACGGAGCGGTGGAGAAGCCATCGCTCACCTTCGAGTTGGTGTCGCAGTTTTTC
TGCATGCCGATCGATGAGGCGGCGCGGGAGCTCAATGTGGGGCTGACGTCCCTGAAGAAGAGATGCAGGGAGCTTGGGAT
CCCCCGGTGGCCGTGGCGCACGGTGAGAAGCCTTCAGGAGCTCATCGATGTTGTTAAGGTAACTCCTCCCCCTCCCCCCT
CCCCCCCAAAAAAAAACTCTTCTAGCACTCTCTGATTTATTTCAGCATATGCATGTAAGTTTGCAAGTGTATGTGAGTCT
CAATTTCATGTTGTGCAGGAGCTGGGCAAGGACGACACTCCGGAGAAGGCAGAGAAAACTAAGATGGTGGTACATAAGTT
GCTGGAGGTGATGAAACTGATTGCGGAGAGACCCGATGTTGAGCTGGACAAGGAGACGAAGGTGTTTAGGCAAGCTTGTT
ACAAGGAGATGCATGAGCGCCGAATAAAGAGGAAACTCGGTAAGGTTCTTGATGCATGACGGGGATGTAGAACATGTTAT
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>SNPs
S---------------S----------S---------S-------------S--------------------------S-
----------------------------------------------------------------------S---------
------------------------S---------S--------S---S--------------------------------
---------------------------------------------------------S----------------------
-S--------------------------S----------------S------------------S---------------
-------------------------S---------S----------------------------------S---S-----
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--------------------------------------------------------SS----------------------
----S---S-S---S----------------------S-----SS---------------------S-------------
S----S-------------S-----------S------------------------------------------------
-------S------------------------------------------------------------------------
---S---------------------------------------------------------S---S--------------
------------------S-------------------------------------------------------------
-------------------------------------------------------------------S------------
---------------------------------SS---------------------------------------------
-----------------------------------------------S---------------------S----------
------------------------S-----S-SSS--S----------------S------------------------S
----------------------------------------S---------------------------------------
---------------------------------S------S---------------------------------------
--------------SS----------------------------------------------------------------
---------------------------S----------------------------S-----S-----------------
------------S------------------------------SS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S------------
--------SS-------------S-----------------S------------------S-------------SS---S
----SS-S-------SS-----S---------SSS--SSSSSSSSS------------------S------------S--
S-----------------------S-----------------------------S-S----------------S-----S
----------S---S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS-----------------S---
-SSS-S----S---S----S-------------S-S----------------------------S---------------
----S--------------SS----------------S------S------------------SS---------------
------------------------------------S-------------S-------S---------------------
-------SSS--------S------------------S---------S-------------------S---S---S----
------------S--SSSSSSS
>forward_884
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---------------------------------------------------------------TCTCATTGGACGTTTGA
CCCA----------------------------------------------------------------------------
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>reverse_1883
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------------------------------------------AGGAACGGAGGGAGTAACAAC-----------------
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