>input_sequence_77468
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------------------------------------------------TCAAGCAGGCGGTAGCTTCAC---ATCGTAGT
AGTAGCTAGAGCTAGCGAGGTCTCCTCGAC--------CCCAGTCTCAGTAGTTTCTCTTCAAGA-------TGTCGCAG
AGGCCGGGGAGGCACCAGAGGAGGGCGTCGCAGAGTGTGTTCTCGCTGCCGGAGAACTTCGCCAGCCTGGAGGACGTGCC
GGCGGACGGCGTCGGCGAGCAGCGGAAGCCCGCCGCGGCTGGGGCGGACGCCTCCGAGCAGCAGCCCGCGAGGCCGGCGG
---GGCGCCACCGCCGGGCAATGTCGATGGCCGTGCCCTCCAGGGACCTGGACATGATCGTGGAGGACATGGGAAGCTAT
AAGTACGGCGCCTGATTAGCAAGATGTGTAGTTCACGCTGGTGT----GTACGTACGAGTTCTTCAGTGGCTGTTGGGTA
GTGTCA-GTTCTGTACGCCGTTTGGTTGTTTTGTTCTGTGCTGTGTTTTCACTGTTTCCCCGAATGTGTACTCCTCC---
--TTTGCTTACCTGACCAGAGTAAAGAAATCCCGCTGTCTGTT-------------------------------------
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>chr3B_1_TraesCS3B01G388500
AATCGGTTACTCCCTCCGTCCGAAAATACTTGTCATCAAAATAGATAAAAAGGGATATATCTAGAACTAATATACATCTA
GATACATCCCCTTTTATTCATTTTGATGACAAGTATTTTCGGACGGAGGAAGTAATTAACAAGCACTTATTAGACAGTGT
AGGAGCATTATG--------CTATATGGTGCTAGAACTGACGATATATGTCGTGCTGGAATTCAAGGGAATAATTACTAG
TATCTCCGTATAGAACCGTTAGCAAGGAACCCCCGATCCGTACCAGCTCATTTTTTGTGATAACTTAGACGTTTAATTAA
GAAAATAAGTTCGATTTGTGATAACTGTGCATGATTTGGTTTTGTTATTGCATGGTTGATTCCCTCTTCGGTTTGCACGT
GGCTCTCTGCTAATCATGTCAGGGCGGCTCATGAGTGAAGCACTAAGCCAATAAAAATGGCGAGCCCGGTCCTGAGATTC
CTGTACATGCGCCTCATGAGTGTCATTTGTTTACGCTCGTAGGAAGCTTCCTAGCGACATCCGAAACGTACGGAGGACAT
ACAGTACTGAGCAGCCAGCCATGTCAATCAAGGGAGCAGCAGCCAGCAGTACGTGCCAAGTTGACTATACTTTGCAAAGA
TGAGAGCACCACATCAGCAAAGACGAACGTTAATCTGGTAATCATCAAGATGCTCGCATGCTTAATTGATGGCCACGTCC
AACAAGCAAGTCCTTAACCAGACGCGCGGGGCGGGTAGGAGCCATGCGCATGCACATGCACATGCATGCAGCTCCGCGCG
CCATGGATATGCACGTACGCACAAAGTCAATGCCCTTTGGAGCCAGGAACTGCCAGATCGCTCACAAATTTAATCACTAC
TCCATGTTACAATAATTGTACCGCTGTTAGTACTGGTGAACAGGCTCGTAAATAATTGGAAAAACAAATTGCAAACGAGC
GTGCGCTGGGCAGGCCTATATATACATCGGTGGTGCCGTGTAATTCAATCAAGCAGGCGGTAGCTTCAC---ATCGTAGT
AGTAGCTAGAGCTAGCGAGGTCTCCTCGAC--------CCCAGTCTCAGTAGTTTCTCTTCAAGA-------TGTCGCAG
AGGCCGGGGAGGCACCAGAGGAGGGCGTCGCAGAGTGTGTTCTCGCTGCCGGAGAACTTCGCCAGCCTGGAGGACGTGCC
GGCGGACGGCGTCGGCGAGCAGCGGAAGCCCGCCGCGGCTGGGGCGGACGCCTCCGAGCAGCAGCCCGCGAGGCCGGCGG
---GGCGCCACCGCCGGGCAATGTCGATGGCCGTGCCCTCCAGGGACCTGGACATGATCGTGGAGGACATGGGAAGCTAT
AAGTACGGCGCCTGATTAGCAAGATGTGTAGTTCACGCTGGTGT----GTACGTACGAGTTCTTCAGTGGCTGTTGGGTA
GTGTCA-GTTCTGTACGCCGTTTGGTTGTTTTGTTCTGTGCTGTGTTTTCACTGTTTCCCCGAATGTGTACTCCTCC---
--TTTGCTTACCTGACCAGAGTAAAGAAATCCCGCTGTCTGTTTCAAATTTGCAGTGTTTCTGGCACAGGTAAAAATTTA
CATACGTGCTTAGGTTACAGTATAATGCGACAGAGCTCTTCGGAAGCAGGATAATTTACTGATTTTTCATTCC-AAAGGA
TGATACAGTTG------TGTATATGGAACTCCTACCGTCGCTAAGCCGAGAGCCGAGAATCGTCGCTAATCCGATCCCAG
ACGGAGAACGACGATGCCACAGTGGTGCCGGCCGGTAGGCGGGGCCAGCGAGACGAGTCGATGGTAGCAGATCCGGTGAA
CGGTGATGGAGATCATGGAGGTGACGCGAATCTTGCGAGGCTAGGCCAACGAGCGGCGAGGCGGATCCGGTAGA-----C
GACCTGTCACCGTGATTTTTTTTTTAAGAAACTGACATCGGCACAGCGCTCGTGCTATCGTGCGCATGACCTCATCCGGC
CGTGCTTTTTGTTTGTGCTGCTCGAATCCCCCATCGCGCGCGCTCACAGCCTCCTGTTAGTGGGCCCGCCCAGGAATGCG
TCTTTTTTTTCTGCACCTGGTTTTTTCGAAGGTCG-TTTTTTTACCTAGGTCGGTTTCTAATTAAAAATATGTGAATTAA
AAAATC-GTAAATTCAGAAAATGTTGACGAATTCAAAAAATTCACGGATCTGAAAAAAAGTTCACAC--------AGTGC
TCATGATTTCAAAGAAAGTTCA-------------------CGGATTCAAAAATGTTGACAAAATAAAAATTTGTTCGTG
GCGTCA-AAAAATGTCCACAAATTA--------CTCGAGGATTTGAAATAGTGTTCACGAATTAAAAAAAGTTCAGAAT-
ATTGAAATATTATTCATCAATAAAAAATATGCTCATGTATTTAAAAATAATGTTCATGAATACATAAAATGTTTGTGGAT
TTGAAAAATGTTAGAAAATTCAAAAAAATCATAAGTT----AAAAAACATTATGAATTTGAAAATTGATTGTGAATACCA
AGT-TGTTCGCGTATCTACAAAAATGATCAAGGATTTGGAAGAAAATCTCCATAAATAA---------------------
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>chr3A_133
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----------------------------------------------------TAATTAACAAGCACTTATTAGACAGTGT
AGGAGCATTATGCTATATGAGTATATGGTGCTAGAACTGACGATATATGTCGTGCTGGAATTAAAGGGAGTAATTACTAG
GATCTCCGTATAGAACCGTTAGCAAGGAAC-CCCGATCAGTACCAGCTCATTTTT-GTGATAACCTAGACGT----TTAA
GAAAATAAGTTGGATTTGTGATAACTGTGCATGATTTGGTTTTGTTATTGCATGGTTGATTCCCTCTTTGGTTTGCACGT
GGCTCTCTGCTAATCATGTCAGGACGGCTCATGAGTGAAGCACTAACCCAATAAAAATGGCGAGCCTGGTCCTGAGATTC
CTGTACATGCGCCTCATGAGTGCCGTTTGTTTAAGCTCGTAGGAAGCTTCCTAGCGACATCCGAAACGTACGGAGGACAT
ACAGTACTGAGCAGCCAGCCATGTCAACCAAGAGAGCAGCAGCCAGTAGTGCGTGCCAAGTTGGCTATACTTTGCAAAGA
TAAGAGCACCACATCAGCAAAGACGAACGTTAATCCGGTAATCAACAAGATGCTCATATGCTTAATTGATCGCCACGTTC
AGACCAA---------------------------GTAGGAGCCATGCGCATGCGCATGCACATGCATGCAGCTCCGCGCG
CCATGGATATGCAT----GCACAAAGTCAATGCCCTTTGGAGCCATGGACTGCCAGATCGCTCACAAATTTAATCACTAC
TCCATGTTACAATAATTGTACTGCTGTTAGTACTGGTGAACAGGCTCGT-AATAATTGGGAAAACAAATTGCAGACGAGC
GTGCGCTGGGCAGGCCTATATATACATCGGTGGTGCCCTGTAGTTCACTCAAGCAAGCGGTAGCATCATCATATCGTAGT
AGTAGCTAGAGCTAGCTAGGTCTCCTCGAC--------CCCAGTCTCAGTAGTTTCTCTTCAAGA-------TGTCGCAG
AGGCCGGGGAGGCACCAGAGGAGGGCGTCGCAGAGCGTGTTCTCGCTGCCGGAGAACTTCGCCAGCCTGGAGGACGTGCC
GGCGGACGGCGTCGGCGAGCAGCGGAAGCCCGCCGCGGCGGGGGCGGACGCCTCCGAGCAGCAGCCCGCGAGGCCGGCGG
CGGGGCGCCACCGGCGGGCAATGTCCATGGCCGTGCCCTCCAGGGACCTGGACATGATCGCGGAGGACATGGGAAGCTAC
AAGTACGGCGCCTGATTAGCGGGACGTGTAGTTCACGCTGGTGTGTACGTACGTACGAGTTCTTCCCTGGCTGTTGGGTA
GTGTCCTGTTCTGTTTGCCGTTTGGTAGTGTTGTTCTGTGCTGTGTTTTTCGTGGTTCGCTGAATGTGTACTCCTTC---
-ATTTGCTTGCCTGACCTGAGTAAAGAAATCCCGCTGTTACAAA-----TTTCAGTGTTTGTGGCAAAGGTAAAAACTTA
CAAACGTTCCTAGGTTACCATAATGCGGCAC--AGCTCTTGGGAAGCAGGGTGATTTACTGATTTATCATTACGAAAGGA
TGATACAGT--------TGCGTATGGCACTCATACCGTCGCTAAGCCGACAGCCGAGAACCGTCGCTAATCCGATGCCAG
ACGGAGAACGGCAACGCCACGGTGGTGCCGGCCGGTGGGCGGGGGCAGCCAGAGGAATCGATGGTGGCAGATCCGGTGAA
CGGTGATGGAGATCATGGAGATGACGCGAATCTTGCGAGGCTAGGCTAACGAGCGGCGAGGTGGATCCGGTAGGCAACCC
GACCTGTCACCGTGAAAAGA-AAAT-AGAAAGTGACGTCGGCACAGCGCTCGTGCTATCGTGCGCATGACCTCGCCCGGG
CGTGCTGCTGGAAG--------------CCCCATCGCGCTCGCTCACAGCCTCCCGTTAGTAGGCCCGCCTATGAATGCG
TCTTTTTTTTCTGCACCTGGTTTTTTCAAAGGTAGCTTTTTTTACCTAGGTCGGTTGCTAATTAAAGATATGAATTAAAA
AAAATC-ATAAATTCAAAAAATGTTGACGAATTCAAAAAAATCACGGGTTTGAAAAAACGTTCGCGAATTCATAAAGTGC
TCATGATTTCAAAGAAAGTTCA-------------------TGGGTTCAAAAATGTTGAGGAATTCAAAAGTTGTTCATG
ACGTCA-AAAAATGTCCACAAATTA--------CTCGAGGATTTGAACTAGTGTTCACGAATTCAAAAAAGTTCGCAAT-
CTTGAAATATTATTCATGAATTCAAAAAATGTTGATGGATTTGAAAATAATGTTCATGAATGGATAAAATGCTTGCAGAT
TTGAAAAATGTTAGTGATTTCAAAAAATATTCATAAGTTC-AAAAAACATCATGAATTTGAAAATTGATTGGGAAGCTAC
AAGTACGGCGCCTGATTAGTAAGATGTGTATTTCACGCTGGTGTGTACGTACGTACGAGTTCTTCCGTGGCTGTTGGGTA
GTGTCCTGTTCTGTTCGCCGTTTGGTAGTGTTGGTCTCTGTGCTGTGTTTTTCGTGCTTCTCTGAATGTGTACTCCTTCA
TTTGCTTGCCTGGCCTCAGTAAAGAAATCCCGCTGTTGCAAATTTGCAGTGCTTGTGGCAAAGGTTAAAATTTAAATACG
TGCCCAGGTTACAGTAATGCGGCACAGCTCTTCGAAAGCAGGATGATTTGCTGATTTTTCATTACCAAAGGATGATACAG
TTGTGTATGGCACTCATACCGTCGCTAAGCCGAGAGCCGAGAACCGTCGCTAATCCGATGCCAGACGGAGAACGGCGATG
CCACGTTGGTGCCGGCGGGTGGGCGGGGCCAGCGGGACGAGTCGATGGCAGCAGATCCGCTGAACGGTGACGAGAATCTT
CCGAGGGTAGGCCAACGGGCGGCGAGGTGGATCCGGTAGGCAACCCGACCTGTTACCGTGAAAGAAAATAGAAAGTGACG
TCGGCACAGCGCTCGTGCTATCGTGCGCATGACCTCGCCCGGGCGTGCTGCTCGAAGCCCCATCGCGCGCGCTCACAGCC
TCGCGTTAGTAGGCCCGCCCATGAAAGC
>chr3D_133
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----------------------------------------------------TAATTAACATGCACTTATTGGGCAGTGT
AGGAGCATTATGCATTTATGCTCTATGCTGCTAGAACTAACGATATATGTCGTGCTGGAATTCAAGGGAATAATTACTAG
GTTCTCCGTATAGAACCGTTAGCAAGGAACCCCCGATCCGTACCAGCTCATTTTT-GTGATAAAATAGACGT----TTAA
GAAAATAAGTTCGATTAGTGATAACTGTGCATGATTTGCTTTTGTTATTGCATGCTTGATTCCCTCTTCGGTTTGCACGT
GGCTCTCTGCTAAATATATCAGGACGGCTCATGAGTGAAGCACTAACCCAATAAAAATGGCGAGCCCGGTCCTGAGATTC
CTGTACATGCGCCTCATGAGTGCCATTTGTTTACGCTCGTAGGAAGCTTCCTAGCGACATCCGAAACGTACGGAGGGCAT
ACAGTACTGAGCAGCCAGCCATGTCAACCAAGGGAGCAGCAGCCAGAAGTACGTGCCAAGTTGGCTATACTTTGCAAAGA
TGAGAGCACCACATCAGCGAAGACGAACGTTAATCTGGTAATCATCGAGATGCTCGTATGCTTAATTGATGGCCACGTCC
ACCAAGCAAGTCCTTAACCAGACGCGCGGGGCGGGTAGGAGCCATGCGCATGCACATGCACATGCATGCCGCTCGGCGCG
CCATGGATATGCAT----GCACAAAGTCAATGGCCTTTGGAGCCAGGAACTGCCAGATCGCTCACAAATTTAATCTCTAC
TCCATGTTACAATAATTGTACTGCTG---GTACTGGTGAACAGGCTCGT-AATAGTTGGAAAAACAAATGGCAGACGAGC
GTGCGCTGGGCGGGCCTATATATACATCGGTGGCGTCCTGTAATTCAATCAAGCAGGCGGTAGCATCAC---ATCGTAGT
AGTAGCTAGAGCTAGCTAGGTCTCCTCGACGGCTCGACCCCAGTCTCAGTAGTTTCTCTTCAAGAATCAAGATGTCGCAG
AGGCCGGGGAGGCACCAGAGGAGGGCGTCGCAGAGCGTGTTCTCGCTGCCGGAGAACTTCGCCAGCCTGGAGGACGTGCC
GGCCGACGGCGTCGGCGAGCAGCGGAAGCCCGCCGCGGCGGGGGCGGACGCCTCCGAGCAGCAGCCCGCGAGGGCGCCGG
CGGGGCGCCACCGGCGGGCAATGTCGATGGCCGTGCCCTCCAGGGACCTGGACATGATCGCGGAGGACATGGGAAGCTAC
AAGTACGGCGCCTGATTAGTAGC-TGTGTAGTTCACGTTTGTGTGTACGTACGTACGAGTTCTTCCCTGGCTGTTGGGTA
GTGTCCTGTTCTGTTCGCCGTTTGGTAGTGTTGTTCTGTGCTTTGTTTTTCGTGCTTCTCTGAATGTGTACTCCTTCCTT
AATTTGCTTGCCTGACCAGAGTAAAGAAATCCCGCTGTTG----CAAATTTGCGGTGTTTGTGGCAAAGGTAGAAATTTA
CATACGTGCCTAGGTTAGAGTAATGCGGCAC--AGCTCTTCGGAAGCAGGATGATTTACTGATTTTTCATTACGAAAGTA
CGATACAGTATTACAGATGTGTATGGAACTCCTACCGTCGCTAAGCCGAGAGCGGAGAACCGTCGCTAATCCGATGCCAG
ACGGAGAACGGCGACGCCACGGTGGTGCCGGCCGGTGGGCGGGGCCAGCAAGACGAGTCGATGGTAGCAGATCCGGTGAA
CGGTGATGGAGATCATGGAGGTGACGCGAATCTTGCGAGGCTAGGCCAACGAACGGCGAGGTGGATCCGGTAGGCAACCC
GACCTGTCACCGTGAAAAAACAAAT-AGAAAGTGACATGGGCACAGCGCTCGTGCTATCGTGCGCATGACCTCACCCGGC
CGGGCTGCTCGAAG--------------CCCCATCGCGCGCGCTCACAGCCTCCAGTTAGTGGGCCCGCCCAGGAATGCG
TCC-TTTTTTTTGCACCTAGTTTTTTCGAAGGTCGTTTTA---------------------------ATATGGATTCAAA
AAAGAATGTAAATTCAAAATATGTTCACGAATTAAAAAATATCACGGA-TTGAAAATATGTTCACAAATTCGTAAAGTGC
TCATGAATTCAAAGAAAGTTCACAAATTCAAAAATAATTCGTGGATTCAAAAATGTTGACGAATTCAAAATTTGTTCGTG
ACACAATAAAAATGTCCACACATTCAAACATTGCTCGAGGATTTGAAATAGTGTTCAGGAACTCAGAAACAGTTAACGAG
CTTGAAATATTATTCGTGAATTCAAAAAATGTTCATGAACAAGAAC-----------------------TGTTTGTGGAT
TTAAAAAATGTTAACGAATTCGAAAAATATTCATAAGTTCAAAATATCATCACGCTCTTGAAAAATGTTCATGAATCCCA
AAAGTGTTCGCGTATTTGCAAAAATGATCAAGGATTTGAAAAAAAT----------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
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S------------------------------------------------------S--------S-------SSSS----
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-----------------------S----------------------S---------------------------------
----------------------S---------------------------------------------------------
---------------------------S------------------S----------------S----------------
--------------------------------------------------------S-----------------------
-S------------------------------------------------------------------------------
-------------SSSSS--------------------------------------------------------------
---------------------S---------------------------S-----------------------S------
-------------------------------------S--------------------------S---------------
----------------S---------------------------------------------------------------
-----------------------------------S--------------------------------------------
---------------------------------------S----------------------------------------
-------------S----------------------------------------------S------------------S
---------------------S-------------------------------------------SS-------------
-----S--------S-----------S--S-------------------SSS--S---S-S--------------S----
---------S----------------------------SSSSSS----------------S-----S-------------
---------S------------SSSS-SS--SS-------------------S------------------S--------
---------SS---------S--------------------------------------S---------------S----
----------S---S-----S---------------S------------S------------------------------
-------------------------------------------------------------S-----------S------
---------------SSSSSSSSS-S-----S------------------------------------------S-----
------SS-S-SSSSSSSSSSSSSSSSS--------------------------S-------------------------
--------------------------------------------------------S---------S-----SSSSSS--
----------------S-----------------------S--------S--------S-------S-------------
-----------------------------------------S------------------S--S-S--------------
S--------------------------------------------------------------S-----------S----
S----------------S---SS----S---S-----S----S------------------SS-----------------
--------------SS-----------SSSSS-SSSS-------------S-------------------------S---
-SS------------S----------------------S--S---SS-SSSSSS-SS-S---------------------
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>forward_21
-ATCGGTTACTCCCTCCGTCC-----------------------------------------------------------
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>reverse_1446
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-----AGTTCTGTACGCCGTTTGGT-------------------------------------------------------
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>forward_1341
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-----------------------------------------AGGGACCTGGACATGATCGT-------------------
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>reverse_2557
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----------------------------------------------------------------------------ACCA
AGTTGTTCGCGTATCT----------------------------------------------------------------
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