>input_sequence_77435
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----------------------------------------------------------------------------ATGG
GGAGCAAGAGATCGCCGCGCGCGCCGGCCGTGGTGGTGGTAGTGGTGCTGCTGCTGTTCGTCCTCATGCCGGACGAGGCG
GACGCCCAGGTGTTCTGCCGGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACCTACCCCGGCGCCAACCC
GGCGGTGCCGCCGCGGCGGCCACTGTTGCTCAACGCGTCCTCGTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACG
AGCACAGCGCCAGCGGCGGCCATGGCGGCGA------------------------------GCACGGGAGCAGCCACGGC
AGCGAGCACGGGGGCAGCCACGTGAGGCGCCGCCACGGGCACCAGCACCACGTAGGGGGCGCGGACCCGTACGACACGGC
GTGCTGCCGGCGCCTCATGGGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGG
TCAAGCACTCCATCAAGCTCACCCCGGTCCCCGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGA---------
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>chr5D_1_TraesCS5D01G185200
GAGGGCTGGATTAGTTACGTGCGGCTGTAGATGCTCTTAGAGCAGTGCAATTTGAAATTTAAGTTATTTGGTTTTATAAC
GCAAACATATGGAATCAGGAGGAGGTGCTTTGCCTGCCGAAGCAGTTTGGGAGAACATATAGATTCTGCAGCTTTAAGCC
TGCAGATTCCTTACCACTGCAAATGAGCAACAGAAAAGCATTTAGTTTTCATGTATTAAAACAACGGAACTAAAGAAATG
CTAGAATTAGCCTGCGATTGTTCTTAA--AGTTGGCCATGTCATCTGAAGTCGTGTCATGCACA-----TATGTGCCTAG
AAATACCGGCAAAAACTTTGGTCTGAAGTTGTCTCTTGTTCTCAGAGATGCAGATGAACATTCTAACAACAGTTCCGGAC
TGGCAGGACCGCTGCTTTCTGAAGAAG------AAAAACCTATCGCTCACAAAATTTCAGGAATATGTAGGCTGCTGCTA
TGACTCAGACCAAAACGATCAC-TTTTTTGCCTGTTAAACGAGAACAGTCTCATGTTCTCCAAAACAATCTTCAGATGTA
ACAGAGCCCGTCAGTGTATCA-----------CAAAAATTTAGGAAATACTATATGTTTGTGCTATGACTCAGCCCAAGA
AACTGTCACTTTTTGGCCGATAAATCAGTCTCATCTCCTGCAAAAATATGTCCCTGCAGGGGATTCAAAGCTTGTTTCAA
TCACTGCAATATTTCTGCAACTCCTCCACTGCATCCTGAAAACGAACCTCAGGTCAACA-GGTCAAGTGTCAACTGGTCA
CAGCTCAAGCATGATCAACCTATAAACCACTCCAACAAATCGGCCTCGCAAACCGTAACCATGTCACAGCGCCCTCCTAA
CCCCTACTGAAC--ATGCCCCGGATCAGCGTCACGTAGCTACTTAAGCGCCCCTGAAATGCCACCCAGATCATCATCCGC
TCCAAAGCCAACAC---AGCAGCAGCAGCATCAGTCAGTAA-----CCAGCTCGGGAAGCAGACAGAGCGGCAGCAATGG
GGAGCAAGAGATCGCCGCGCGCGCCGGCCGTGGTGGTGGTAGTGGTGCTGCTGCTGTTCGTCCTCATGCCGGACGAGGCG
GACGCCCAGGTGTTCTGCCGGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACCTACCCCGGCGCCAACCC
GGCGGTGCCGCCGCGGCGGCCACTGTTGCTCAACGCGTCCTCGTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACG
AGCACAGCGCCAGCGGCGGCCATGGCGGCGA------------------------------GCACGGGAGCAGCCACGGC
AGCGAGCACGGGGGCAGCCACGTGAGGCGCCGCCACGGGCACCAGCACCACGTAGGGGGCGCGGACCCGTACGACACGGC
GTGCTGCCGGCGCCTCATGGGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGG
TCAAGCACTCCATCAAGCTCACCCCGGTCCCCGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGACCACGCCCC
GCCCCGCCCCTTCCCACAGTTCCATTTTACTGAAAACGTAGCAGCCTCTGCACCAGCAATTTTCCATTTTC-TGGTCTAG
TTTAACAATTCTGGGATTTATTTACATTATATAGTTCTGTTCTGGATGCTTTTTTCTCCCTCTCATGACTAGTAGGGACC
TTTTTTTTTCCATA-----ATGATTAATAGTGAACTTGGCATTCTCCACACGC--TGGTGTAATTTCTAAATAGTACTTC
CTCCGTCCGAAAAAACTTGTCCCAAGCTTGTCCATCAAATGGATGTATGTTGCACTAACTTGGAGCTAGATACATCTATT
TGAGGGACAAGCTTTTCGGACGAAGAGAGTAAAAACTTATCTTTCTGTCCGTTTGGTTTGGCAGTACAACTTTTTAAAAA
CCGCAGTAATCCTAAACCTCAGTATTCCAGTGCCTGGGCAATGACCTCTTTTTATAAAAAAACAGTGCTATTTGTTGATG
CTAAACACATCAAAGTTTATAAAACCGTGGTTTCTGGAAAACTCCAAAA--ATACTTGGATGCAAACGCAGCCTTAACTT
GCCCCCCTTGGTATTGAAAATTTATGGCAATCTCAGAACTTATTAGAAACAAGAAAAGTACAGTAATACTCTGGACTCCA
GAACACAGGTCACTGAAATATGACAGGAACACATTATATTCGCACAAACC-AACACAAAATATTCTGAAACACAAATAAT
GAAAAATAGAA-GATGGAGCTTCCATTATGAACTTC-ATAGCAGATTCAAATTAGATGATCATGTACATATTACACGGTA
CATATAAGGCTCAACCAGATTAATCTA--GGGGGGAAGACTGTACAATTTCCGACAAAAATTGGAGATGAACACATCTCC
TGATCACAAACTCACCCTGACATCTCTCAGAAAGACGAAAACCTCAATGGTGTTGAGGCCTCAAAGTTTCTCTAGTTCAC
GTTCCATCGAAGCAAAGTCGAAACCTTCCCAATTAAGTTGTGCATC
>chr5B_1
GAGGGCTGGATTAGTTACGTGCGGCTGCAGATGCTCTTAGAGCAGTGCAATTTGAAATCTAAGTTATTTGGTTTTATAAC
GCAAACATATGGAATCAGGAGGAGGTGCTTTGCCTGCCGAAGCAGTTTGGAAGAACATATAGATTCTGCAGCTTTAAGCC
TGCAGATTCCTTACCACTGCAAATGAGCAACAGAAAAGCATTTAGTTTTCATGTATTAAAACAATGGAACTAAAGAAATG
CTAGAATTAGCCTGCGATTGTTCTTAG--AGTTGGCCATATCATCTGAAGTCGTGTCATGCACA-----TATGTGCCTAG
AAATACCGGCAAAAACTGTGGTCTGAAGTTGTCTCTAGTTCTCAGAGATGCAGATGAACATTCTAACAACAGTTCCGGAC
TGGCAGAACCGCTGCTTTCTGAAGAAG------AAAAACCTATCGCTCACAAAATTTCAGGAATATATAGGCTGCTGCTA
TGACTCAGACCAAAACGATCATTTTTTTTGCCTGTTAAACGAGAACAGTCTCATGTTCTCGAAAACAATCTTCAGATGCA
ACAGAGCCCGTCAGTGTATCAGATGTAACTCACAAAAATTTAGGAAATACTATATGTTTGTGCTATGACTCAGCCAAAGA
AACTGTCACTTTTTGGCCGATAAATCAGTCTCATGTCCTGCAAAAATGCCCT--TGCAGAGGATTCAAAGCTTGTTTCAA
TCACTGCAAAATTTCTGCAACTCCTCCACTGCATCCTGAAAACGAACCTCAGGTCAACAAGGTCAAGTGTCAAGTGGTCA
CAGCTCAAGCATGATCAACCTATAAATCACTGCAACAAATCGGCCTCGCAAACCGTAACCATGTCACAATGCCATCCTAA
CCCCTACTGAACATATGCCCCGGATCAGCGTCACCTAGCTACTTAAGCGCCCCTGAAATGCCACCCAGATCATCATCCGC
TCCAAAGCCAACACAGCAGCAGCAGCTGTCAGTAACCAAGGGACAGCCAGCCCAGGAAGCAGACAGAGCGGCAGCAATGG
AGAGCAAGAGATCGCCGTGCGCGCCGGCCGTGGCGGTGCTCCTCCTCCTC---CTGTTCGTCCTCATGCCGGACGAGGCG
GACGCCCAGGTGTTCTGCCGGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACTTACCCCGGCGCCAACCC
GGCGGTGCCCCCGCGGCGGCCACTTCTTCTCAACGCCTCATCGTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACG
AGCACAGCGCCAGCGGCGGCCATGGCGGCGACCACGGCGGCAGCCA------TGGCGGCGAGCACGGGAGCAGCCACGGC
AGCGAGCACGGGGGCAGCCACGTCAGGCGCCGCCATGGGCACCAGCACCACGTAGGAGGCGCGGACCCGTACGACACGGC
GTGCTGCCGGCGCCTCATGGGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGG
TCAAGCACTCCATCAAGCTCACCCCAGTCCCAGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGACCACGGA-C
GCCCCGCCACTTCCCACAATTTCATTTTACTCAAAACGTAGCAGCCTCTGCAGCAGCAATTTTCCATTTTCCTGGTCTAG
CCTAACAATTCTGGGATTTATTTACATTATATAGTTCTGTTCTGGATTATTT-TTCGCCCTCTCA-GATTAGTAGGGACC
TTTTTTTTCCACTATAT----GATCAATAGTGAA-TTGGCATTCTCCACACACACTGGTGAAATTTCTGTGGT-------
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---------------------------AGTGCAAACTTATCTTACAAT----------------------TTTTTTAAAA
CCATAATAATCTTAAACCTCAATATTCCAATGCCT-GGCAATGACCTCTTTTTATAAAAG---AGTGCTATTTGTTGATG
CTAAACACATCAAAGTTTATAAAACTGTCCTTTATGAAAACTAAACATGGTATTCTAGGATGAAAACGCAGCCTCAACTT
GGGCCCCTTAGGTATAG-AAATTATGGCTATCTCTGAACTTACTGAAAACAAGAAAAGTACAGTAATACTCTGGACTCCA
GAGCACGGGTAACTGAAATATGACAGGAGCACATTATATTCACATAAAGC-AACGCAAAAAATTCTGAGACACGAATAAC
AAGAAGACACACGATCGAGCTTCCATTATGAATTTCAATAGCAGATTCGAATTAGATGATCATGTACATATTACACGGTA
CATATAAGGCTCAACCAGATTAATCTA--GAGGGGAAGACTGTACAATTTCCGACAAAA-TTGGAGATGAACACATCTCC
TGATCACAAACTCACCCTGACATCGCTCAGAAAGATGAAAACCTCAAT-GTGTTGAGGCCTCAAAGTTTCTCTAGTTCAT
GTTCCATCGAAGCAAAGTCGAAGCCTTCCCAATTAAGTTCTGCATC
>chr5A_83
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--AAACATATGAATTCAGGAGGAGGTGCTTTGCCTGCCGAAGCAGTTTGAAAGAACATATAGATTCTGCAGCTTTAAGCC
TTCAGATTCCTTACCACTGCAAATGAGCAACAGAAAAGCATTTAGTTCTCATGTATTACAAAAACGGAAACAAAGGAATG
CCAGAATTAGCCTGGGATTGTTCTTATATAGTTGGCCATATCATTTGAAGTCGTGTTATGCATATACTGTATGTTCCAAG
AAATACCGACAAAAACTGTGGT-TGAAGGTGTCTCTAGTTCTCAGAGATGCAGATAAACATTCCAACAACAGTTTCGGAC
TCACAGAACCGCTGCTTTCTGAAGAAAAGAAGAAAAAAACAGTCGCTCACAAAATTTCAGGA--ATATAGGCTGCTGCTA
TGACTCGGCCCAAAACGATCAC-TTTTTTGCCTGGTAAATGAGAACAGTCTCATGTTCTCCAAAACAATCTTCAGAGGCA
ACAGAGCCCGTTAG-----------------ACAAAAATTTAGGAA----TATATGTTTGTACTATGACTCAGGCCAAGT
AACTGTCACTTTTTGCCCGATAAATCAGTCTCATGTCCTGCAAAAATATGCCCCTGCAGAGGATTCAAAGCTTGTTTCAA
TCACTGCAAAAATTCTGCAACTCAGGTCAAC----------------------------AGGTCAAGTGTCAACTGGTCA
CAGCGCAAGCATGATCAACCTATAAATCACTCCGACAGATCGGCCTCGCAAACCGTAACCATGTCACAGCGCCCTCCTAA
CCCCTACTGAAC--ATGCCCCGGATCAGCGCCACCTAGCTACTTAAGCGCCCCTGAAATGCCACCCAGATCATCATCCGC
TCCAACGCCAACAC---AGCAGCAGCAGTCAGTAACCAAGGGGCAGCCAGCCCGGGAAGCAGACAGAGCGGCAGCAATGG
AGAGCAAGAGATCGCCGTGCGCGCCGGCCGTGGCGGTGCTCCTCCTCCTGCTGCTGCTCGTCCTCATGCCGGACGAGGTG
GCGGCCCAGGTGTTCTGCCGGTCCCAGTTCAACCTGGCCAACGAGGCCTGCAGCCTGCGGACCTACCCCGGCGCCAACCC
GGCGGTGCCGCCGCGGCGGCCACTGCTGCTCAACGCGTCGTCCTCCGCCAGCGGCTACGAGCTGCAGGCGGCCGGCGACG
AGCACAGCGCCAGCGGCGGCCATGGCGGCGACCACGGCGGCAGCAGCCACGGTGGCGGCGACCACGGAGCCGGCCACGGC
AGCCAGCACGGGGGCAGACATGTCGGCCGCCGCCACGGGCACCAGCACCGCGTAGGGGGCGCGGACCCGTACGACACGGC
GTGCTGCCGGCGACTCATGGGCATCGACAACGCCTGCATCTGCCAGGCCATGTCCTTCCTCCCGCAGTTCATGAGCAGGG
TCAAGCACTCCATCAAGCTCACCCCGGTCCCAGGCTGCGACATCTCCTTCGAGTGCGCCGGCGTCTACTGACCACGC---
------------CCCACAATTTCATTTTACTCAAAACGTAGCAGCCTCTGCAGCAGCAATTTTCCATTTTCCTGGTCTAG
CCTAACAATTCTGGGATTTATTTACATTATACACTTCTGTTCTGAATGTTTTTCTCTCCCTCTCATGATTAGTAGGGAAC
TCCTTTTTCCACTATATATATGATTAATAGTGAACTTGGCATTCTCCACACAC--TGGTGTAATTTCT----T-------
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---------------------------AGTAGAAACTTATCTTTCAGTCTGTTTGGTTTGGCAGTACAATTTTTAAAAAA
CCGTAGTAATCTTAAACCTCAGTATTCCAGTGCCTGGGCAATGACCCCTTTTTATAGAAATAGTTC----TTTGTTGATG
CTAAACACATCAAAGTTTATAAAACCGTGGTTTCTGAAAAACTCCAAAA--ATACTTGGATGCAAACGCAGCCTTAACTT
GGAACCCTTAGTATAGAAAAATTATGGCAATCTCTGAACTTATTAGAAACAAGAAAAGTACAGTAATACTCTGGACTCCA
GAGCACAGGTCACTGAAATATGACAGGAACACATTATATTCGCACAAACCAAACACAAAAAATTCTGAAACACAAATAAC
GAAAAATAGAAGATGGA------CATTATGAACTTC-ATAGCAGATTCAAATTAGATGATCATGTACATATTACACGGTG
CATATAAGGCTCAACCAGATTAATCTAAGGGGGGGTGGACTGTACAATTTCCGACAAAA-TTGGAGATGAACACATCTCC
TGATCACAAACTCACCCTGACATCTGTCCGAAAGATGAAAACCTCAATGTTGTCGAGGCCT-AAAGTCTCTCTAGTTCAC
GTTCCATCGAAGCAAAGTCGAAACCTTCCCAATTAAGTTCTGTATC
>SNPs
---------------------------S------------------------------S---------------------
--------------------------------------------------S-----------------------------
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--------------------------S------------S----------------------------------------
-----------------S------------------S-------------------------------------------
------S-----------------------------------------------------------S-------------
------------------------------------------------------------------------------S-
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----------------------------------S---------------S--------S--------------------
---------S----------------------------------------------------------------------
--------------------------S-----------------------------------------------------
----------------------------------S---------------------------------------------
----------------------------SSSSSSS-SSSSS----------S----------------------------
S----------------S---------------S----S-SS-SS-S---------------------------------
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-------------------------S-------------S----------------------------------------
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-----------------------S--------------------------------------------------------
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-------------------------------S---------------------------------------------SS-
--------S---------S--S---------S--------------------S---------------------------
SS----------------------------------------------S-------------------S-----------
--------S-SS---------------------------------------S----------------SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------------S---S-------------------S----------
---S-------S------------------------------------------------S-S-----------------
------------------------------------S-------------------------------------------
-SS------S----------S-------------S---------------------------------------------
--S---------------------------------------------------------S------------------S
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-----------------------------------------------------------S--------------------
-----------------------------------S--------------------------------------------
---------------------------------------S------
>forward_999
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-------------------CAGCAGCAGCATCAGTCAGT-----------------------------------------
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>reverse_1924
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---GGGACAAGCTTTTCGGACGA---------------------------------------------------------
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