>input_sequence_77429
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----------------------------------------------------------------ATGCAAATAGAACGGC
CAAGAGCTGAAATCATGAGCAGCAAGCGGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGTTCGACAAGAATGGT
GACGGCCAGGTCACCAAGAAAGAGCTAAGTGAGTTGCTCAAGAACCTAGGGATCTACATTGCAGGCGACGAGATGGACGC
GACCATGGCCAAGATTGATACCAATGGTGATGGTTGCATCGACGTCGAGGAGTTCGGCCTACTATATCGCTCCATCCTTG
ATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCAGTGTCTTCGACCAG
AACGGTGACGGCTACATCACCATTGAAGAGTTGTGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAGGGTCGCACCGTTGA
GGAATGCCGCCAAATGATCAACAAGGTCGATGTCAATGGCGACGGCCGCGTCGACTTCAAGGAGTTCAGCCAGATGATGC
GTGGTGGCGCGGCCGGTCGTGAGGATTGA---------------------------------------------------
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>chr4A_1_TraesCS4A01G436700
AAACAACTACGATTGATTCACTATACTTGTGAGTCGTCAGCGGTGTGTTTGGTGGCCTTCGAAGATTTGATGCAATTTGT
GATGGGGTCAGGCTGTCTGGTCCGACGTGGCGGACGCGCCCGGGCCTCCTCATACCCGCCCTAGATTTTTGCTCGATGTG
AGAGGTGCCGGTCAGCCCGAGTGTTTAGTGACGGTAACAGGAGCCTGTCTGGGTTGGTTTTTTTCTTACCAGTCAGTGAC
CGGTCCGTCTACCTGAGCTTTTGAGGCAGGTTTGAAGCGACCGGCTCTAGATGCTCTAAGAGCGTCTATGCTGAGATGCC
CATCCTTTACCT-CATAGAGCCAAGCTAGGTATAGACAACGCAATATT---CAATGTGAGAGAGGGGAGG----------
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--------GGGATATGGAGGGAGGTTCCACGGTGTAGTACGACACCATGTGGATTTGTCCTTGCGTGTGGGTTGATACAA
AGTGCAAATGTGGGCACCTTCTCCCCACCAAGATAAACACTTTATATATTGTGTATGACATCTATATATATGTGCACTTG
AAATTTAAGTACAACTGTACAAGTCACTTGTGTTTTGCTTATTTGGTAAGTATAAGGCAATATTCGTCGCAACACAATCA
TCATACATGTTGTAAATTATAATGGTGCTTTCATTTTTTTAACTATGTTTTGATTAATATCTCTATTTCTATATTTATTG
CTCTGTGACAAGGCACGGGCATTCAGCTAGTTTTTAGGTAAGAGAA-AAACCTTGTCTTTTTTTAGACAAGAGAGATAAG
AAATAGACAAAAAGGTGTGCATTGAGTGTCCAGAATAGCTAGTATGGCCAAAAAAAGAACTATGACACACCTTAATTCCA
TCTCTCTTCTCTTGGCAAAGAGGCACCGCTATTCCCTCCACACCACACAGCCTATTCTCCTCGAA-ACAAAACCAATCAC
CGACTACTTCGCCAACATCGTTTCCAGCATTAACCCCCATGAACGTTCGATTGCACGACATATCATGCAAATAGAACGGC
CAAGAGCTGAAATCATGAGCAGCAAGCGGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGTTCGACAAGAATGGT
GACGGCCAGGTCACCAAGAAAGAGCTAAGTGAGTTGCTCAAGAACCTAGGGATCTACATTGCAGGCGACGAGATGGACGC
GACCATGGCCAAGATTGATACCAATGGTGATGGTTGCATCGACGTCGAGGAGTTCGGCCTACTATATCGCTCCATCCTTG
ATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCAGTGTCTTCGACCAG
AACGGTGACGGCTACATCACCATTGAAGAGTTGTGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAGGGTCGCACCGTTGA
GGAATGCCGCCAAATGATCAACAAGGTCGATGTCAATGGCGACGGCCGCGTCGACTTCAAGGAGTTCAGCCAGATGATGC
GTGGTGGCGCGGCCGGTCGTGAGGATTGACTTTATTGCATGGGAATGGTTCATTGTGGCACTATTAGTAGTTGTAGATAA
TTAATTGACTTTAACATGCCAATGATTCAATGTGGATTGTATAC----ATAAATACAAATACATGACGTATGAAACGACC
AACTCTTCTCTTTTATAAAGAC-GGTGAGGCTGCCTTTGTCCATGTTCTCATTTTTT-GGCTGGAGTGGATTCATTATAC
GTTGTAAATGGTATTTATCACACAAAACGGTCGGGTGAAGAAGCAAGTTTTCCCCCTATCCACTCCTTTGATGATCCTGC
AGGCGGCAGGGGAGGCAAAGCGCCGCCATCGGGCCCGCACCCCCCTCTTCCTCCTCTTGGTGGTAGGTGTTAAGAAATAA
AAATATATGATCAATTGTATGGGAGGGATGCTTCCCAGGAGATGTCTGTTGGGGAAGAGGTGTCTCCCCAACACACCCCT
TCAGCCTGTATATAAGTGGGTCTCCA-CATTGCAATGGAACTAGTAGATCATTCGTGTCTCTTTTTTGTCTCTTTTACTT
TGATACTACAACACGTTATCAGCACATAGACTCTCCTAAGAGAG--------CAATAGGGCGACGGTTGATTCTTTCGCT
CACTGACGGAGCGATTTCATCGACT-AAGGAAAATCAATTGGCATGCACATGCAAGCACTCCGCGATGGTGGCAATGGAT
TTGTTTCCC-------------------TGCGCTCCACTGCGGCACGGATTGCTGTAGAATCGACTGCCTAAATTGCTAA
AGGCGACGGTTCCATCAGCCTTTGCGGCGATGCCCCCTCGGCCAAAATAACTGGAGCATGGCCGAAGTGCTCACAGAGAT
GCGTAATCAAATCCATCAAATGGATCGATGGTCATCGGTCTGCATATGCACTCACTAAATTAATGCGCTGATTGATCGAT
TATGAGCATGTACTAGTTTTGAATGAAGGAACTAACCATTGTGTTATGTTCGTCTTTGTTGCTGCTGATCGGGACGACGA
TCCATCGCGGTGGGAGCGCCTGAC
>chr7D_1
AAAGAACTACGATTGATTCACTATACTTGTGAGTCATCAGCGGTATGTTTGGTGGAATTCGAAGATTTGATGCAATTTGT
GATGGGGTCAGGCTGTCTGGTCC---------GACGCGCCCGGGCCTCCTCATACCCGCCTTAGATTTTTGTTCGATGTG
TGAGGTGCGGGTCAGCCCGGGCATTTAGGAACGGTAAGAGGAGCCTGTCTGG------TTTTTTTTTACCAGTCGGCGAC
CGGTCCGTCCGCCCGGGCTTTTGAGGCCGGTTTGAAGCGCCCGACTCTAGATGCTCTAAGAGCATCTCTACTGGGTTGCC
CATCCTTTACGCCCATAGAGCCAAGCTACGTATAGATGATGCAATATT---CANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGGTAGGGAGGGAGGTTCCACGGTGTAGTACGACACCATGTGGATTTGTCCTTGCGTGTGGGTTGATACAA
AGTGCAAACGTGGGCACCTTCTCTCCACCAAGATAAACACTTTATATATTGAGTATGATATATGTATATATGTGCACTTG
AAATTTAAGTACAATAGTACAAGTCACTTGGGTTTTGCTTATTTGGTAAGTTTAAGGCAATATTCGTCGCAACACAATCA
TCATACACATTTTAAATTATAATGATACTTTGAGTTTTTTAACTATGTTTTGATTAATATCTCTATTTTTATATTTATTG
TTTTGTGGCAAGGCACGGGCATTCATCTAGTTTTGAGGTAAGAGACCAAACCTTGTCTTTTT-TAGACAAAACAGATAAG
AAATAGACAAAAAGGTGTGCATTGAATGTCCAGAATAGCTAGTATGGCCAAAAAAAGAACTAAGCCACACCTTAATTCCA
TCTCTCTTCTCTTAGCAAAGAGGCACCGCTATTCCCTCCACACCACACAGCCTATTCTCCTCGAAAACAAAACCAATCAC
TGACTACTTCGCCAACGTCGTTTCCAGCATTAA-CCCCATGAGCATTCGATTGCACGACATATAATGCAAATAGAACGGC
CAAGAGCTAAAATCATGAGCAGCA---GGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGTTCGACAAGAATGGT
GACGGCCAGATCACCAAGAAGGAGCTAGGTGAGTTGCTCAAGAACCTAGGGATCTACATCGCGGACGACGAGATGGACGC
GACCATGGCCAAGATTGATACCAACGGTGATGGCTGCATCGACGTCGAGGAGTTCGGCCTACTATATCGCTCCATCCTCG
ATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCAGTGTCTTCGACCAG
AACGGTGACGGCTATATCACCATTGAAGAGCTGCGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAGGGTCGCACCGTTGA
GGAATGCCGCCAGATGATCAACAAGGTCGACGCCAATGGCGACGGCCGCGTCGACTTCAAGGAGTTCAGCCAAATGATGC
GCGGTGGCGCGGCCAATCATGAGGATTGACTTTATTGAATGGGAATGGTTCATTGTGGTACTATTAGTAGTTGTAGATAA
TTAATTCACTTTAACATGCCAACGATTCAATGTGGATTGTATACATATATAAATACAAATACATGA-GTATGAAACGACC
AACTCTTCTCTTTTAAAAAGAC-GGTGAGGCTGCCTTCGTCCATGTTTTCATTTTTT-GGCTGGATTGGATTCATTATAT
GTTGTAAATGGTATTTATCATGGAAAACGGTAGGGTGAAGAAGCAAGTATTACTCCTATCCACTCATTTGGCGATCCTGT
AGGCAGCAGGGGAGGCAACGCGCCGCCACCGGGCCCGGACCCCCTCCTTCCTCCTCTCGG--------------------
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>chr7A_1
AAAGAACTACGATTGATTCACTATACTTGTGAGTCATCAGCAGTGTGTTTGGTGGAATTCGAAGATTTGATGCAATTTGT
GATGGGGTCAGGCTGTCTGGTCTGACATGGCGGACGCGCTAGGGCCTCCTCATACCCACCCTAGATTTTGGCTCGATGTG
AGAGGTGCGGGTCAGCCCGTGCGTTTAGGAACGGTAAGAGGAGCATGTCTGGGTTG--TTTTTTTTGACCAGTCAGCGAC
TGGTCCGTCCGCCCGGACTTTTGAGACCGGTTTGAAGCGCCCGGCTCTAGATGCTCTAAGAGCATCTCTGCTGGGTTGCC
CATCCTTTACGCCCATAGAGCCAAGCTAGGTATAGACGATGCAGTATTGATCAATGTGAGAGAGGGGAGG----------
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--------GGGGTAGGGAGGGAGGTTCCATGGTGTAGTACGACACCATCTGGATTTGTCCTTGCGTGTGGGTTGATACAA
AGTGCAAACGTTGGCACCTTCTCCCCACCAATATAAACATTTTATATATTGAGTATGATATCTCTA--------------
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>chr7A_523
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----------------------------------------------------------------TATATATGTGCACTTG
AAATTTAAGTACAACTGTACAAGTCACTTGGGTTTTGCTTATTTGGTAAGTTTAAGGCAATATTTGTCGCAACACAATCA
TCATACACATTGTAAATTATAATGATACTTTGAGTTTTTTCACTATGCTTTGATTAATATCTCTATTTCTATAT------
-TTTGAGGCAAGGCACGGGCATTCAACTAGTTTTGAGGTAAGAGACTAAACCTTGTCTTTTTTTAGACAAAAGAGATAAG
AAATAGACAAAAAGGTGTGCATTCAATGTCCAGAATAGTTAGTATGGCCAAAAAAAGAACTAAGCCACACCTTAATTCCA
TCTCTCTTCTCTTGGCAAAGAGGCACCGCTATTCCCTCCACACCACACAGCCTATTCTCCTCGAAAACAAAACCAATCAC
CGACTACTTCGCCAACGTCGTTTCCAACATTAA-CCCCATGGGCATTCGATTGCACGACATATAATGCAAATAGAACGGC
CAAGAGCTAAAATCATGAGCAGCA---GGGTGGATGAGTCGGAGCTAAGGAAGGTCTTCCAGATGTTCGACAAGAATGGT
GACGGCCAGATCACCAAGAAGGAGCTAGGTGAGTTGCTCAAGAACCTAGGGATCTACATCGCGGACGACGAGATGGACGC
AACCATGGCCAAGATTGATACCAACGGTGATGGCTGCATCGACGTCGAGGAGTTCGGCCTACTATATCGCTCCATCCTCG
ATGAAGGCGATGGGCCTAACGGTGGCAACATGGGCGACGAGGAGGAGGAGATGAGGGAGGCGTTCGGTGTCTTCGACCAG
AACGGTGACGGCTACATCACCATTGAAGAGCTGCGGTCCGTGCTGGCAAGCCTCGGCCTCAAGCAGGGTCGCACCGTTGA
GGAATGCCGCCAGATGATCAACAAGGTCGACGCCAATGGCGACGGCCGCGTCGACTTCAAGGAGTTCAGCCAGATGATGC
GCGGTGGCGCGGCCAATCGTGAGGATTGACTTTATTGCATGGGAATGGTTCATTGTGGTACTATTGGTAGTTGTAGATAA
TTAATTGACTTTAACATGCCAATGATTCAATGTGGATTGTATAC----ATAAATACAAATACATGA-GTATGAAACGACC
AATTCCTCTCTTTTAAAAAGACGGGTGAGGCTGCCTTCGTCCATGTTTTCATTTTTTTGGCTGGATTGGATTCATTATAC
GCTGTAAATGGTATTTATCATGGAAAACGCTAGGGTGAAGAAGCAAGTATTCCCCCTATCCACTCCTTTGACGATCATGT
AGGCAGCAGGGGAGGCAACGCGCCGCCACTGGGCCCGGACCCCCACCTTCCTCCTCTCGGCGGCAGG-------------
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>chr7A_1878
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-------------------------------------------------------------------TGTTGAGAAATAA
AAACATGTGATCAATTGTATGAGAGGGATGCCTCCCAGGAGGTGTCTGTTGAAGAAGAGGTGTCTCGTCAACACACCCCT
TCACCATGTATATAAGTGGGTCTCCCGCATTGCAATGAAACTAGTGGATCATTTGGATTCTTCATGTGTCTCTTTTACTT
TCACTCTACAACATGTTATCAGCACCGTTGCTCTCCCTTAGAGCATCTAGGCCAATACGGCGAGAAAAGCAGGAGCAATG
CCTCGGCATGCTCGTCCATGCCCTGCAAGGAAAATCAATTGGCATGCACGTGCAAGCACTCCGCGATGGTGGCAATGGAT
TTGTTTCCGGCGGCCGGAAACAGTGACGTGCGCTCCACTGCGGCACGGATTGCTGCAGAATCGACTGCCTAAATTGCTAA
AGGCGACGGTTCTATCAGCCTTTGTGGCGACGCCCCCTCGGCCAAAATAACTGGAGCATGGCCGAAGTCCTCACAGAGAT
GCGTAATCAAATCCATCAAATGGATCGATGGTCATCGGCCTGCATATGCACTCACTAAATTAATGCGCTGATTGATCGAT
TATGAGCATGTACTAGTTTTGAATGGACGAACTAACCATTGTGTATGCTCGCCTTTTGTTGCTGATGATCGGGACGACGA
TCCATCGCGGTGGGAGCGC-----
>SNPs
---S-------------------------------S-------------------SS-----------------------
--------------------------S-----------------------------------------------------
--------S----------S-S------SS-------S------------------SS------S-----------S---
---------SS--S-S-----------S-----------S-----------------------S---S-----S-S----
----------SS-------------------------S-S----------------------------------------
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-----------S--S-----------------------------------------------------------------
--------S------------------------------------------S------S----S----------------
------------------------------S--------------------S----------------------------
-------SS---------------S-S----S-S----------------------------------------------
S-S----S-----------------S--------S----------S------------------------S---------
-------------------------S------------------------------------S-S---------------
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----------------S----------------S--------S-S------------------S----------------
--------S---------------SSS-----------------------------------------------------
---------S----------S------S-------------------------------S--S-S---------------
------------------------S--------S--------------------------------------------S-
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------------------------------S--S----------------------------------------------
------------S-----------------S-S-----------------------------------------------
-S------------SS------------------------------------------S---------------------
------------------------------------------------------------------S-------------
---------------S---------------------S---------S-----------------S--------------
--------------------SSS--------S----------------S----------------------S-------S
----S-------------S---------S--------S------SS-----------S--S--S-------S--------
---S--S--------------S---------S---------S---------SS-------------SS------------
---S-S-------------------S-----------S-------S-------S-SS-SSS-SS-S--------------
-S-SS--------S-----------SSSSS------SSSSSSSS-------------S-----SSSSS-SSSSSSSSSSS
-SSS-S-SSSSSSS-SSSSS-SSSS------------------------S------------------------------
--------S----------------------------------------------S------------------------
------------S-----------S-----S-------------------------------------S-----------
--------------------------------------S-----------------------------------------
-------------------------S-S----------------SSSS-SSSSS----------S---------------
-------------------SSSSS
>forward_280
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--------------------TTGAGGCAGGTTTGAAGCGA----------------------------------------
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>reverse_2438
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-------------------------------------AAGAGAGCAATAGGGCGACG-----------------------
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