>input_sequence_77407
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------------------ATGTCGACGGCGT---------CG---G------AGCAGCCGCCGCCGCCGCACCGGGGGCT
GTGGAGCCTCG------------GCGGGACGGTGGAGCTCGTGGCGGCGTTCACAGCGGTGTGCCTCGCGCTGTACGGGG
CGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTGCGCCGGACGGGGCCCGGCCCCGAGGCC
GGGCCGGCGACGGGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCGGCCATGCCGGTGTTCAGGTTCAA
GGCGGAGCCGCGCGGGGGCGGCGGCGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCTATGCAGGACGGCGACG
CGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTCGACGTCTGGCTGGGCGCGCACGCCACCTGC
CCCGTCTGCCGCGCTCGCCCTGC---------TCCGGCAGCGAAGGACGGCTCCAAGACGGCAGAGACCGCCGGACGGGG
GCCGGACCTGGAGAGCACGGTATAG-------------------------------------------------------
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>chr2A_1_TraesCS2A01G475800
CAGGGCCGTACAACACATGCCACACAATTTTTTAAAAAAC---TATGTGTACCAAAGATGTAAAATTCTGAATTCTTATC
TACTGTTCTAGA---ATCTTTTAGCTGGAACACATAATCCTTCTAGAATTCTTTCATACAGAATCTTCGAGTTTATCTCC
ATTAAAATATATTCTT----CCATGCAGGATTTTTAAGCCCTGTGATATCAAATTAGGTAGTAGTATATATTAAGTTTGT
G-------TCAAGCGCCTTTTTAGAAGCATTTCTTTAGGCTAGTGCAACATTACCCGAACTAGCACTTCTGACATGGATA
TGAGTTCGAAGATTCTACTTTCACCATTAAATTATAAACAAACAT-------------------------------ATAT
TTTTTTGAGAGGCAAGTGCTGCCACCTGGAAGAAGACTGGAGTGTGGAGTTGGCCACTGGGTAGATTC------CTGGTA
AATGCTCTTGGAACGAACTTGGCTAATCCATTCACTGACACAACATTGTACAGTATAACATAATTTATGCCATGTTTGGT
TTCAATAAGTCACTTGACTTATAAGTCAGGTAACTTAAAACCAGTGACTTATAAGTCACGCCTGTTTGGTTGCCATCTAA
CTTATAAGTCATTTGAGCACATCTTCCCATCTTGTTTTTTACGTAAAGATGGTGGGATCCATGCAAAAGGGGGTGACTTA
TAAGTTTTAAGTTGGGGTGTAGCAACTTATGACTTATAAGTTAGGGTGACTTATAAGTTGGGTCCGTTTGGCAAAATAAG
TTACTTTTTGCACTTTTTGACTTATAAGTTGGTGACTTATTTGGAACCAAACAGGGCCTTAACTCTTGCTCACCCCCGCA
AAAAAAAAGTAAAATAGCTTAACTCTTGCTCCAGCACCACTGGCCGTAACATTACACGCCAACAAAACCATCATTGCTCG
CACCAAGCCAGCAGAGAGAGAGAGCAAAGCAAGAA-CCGCACGGCACGGCACGACACTCTGCCAGTGGAGTGACTGACA-
--TCCATCGATCGGCGGCATGTCGACGGCGT---------CG---G------AGCAGCCGCCGCCGCCGCACCGGGGGCT
GTGGAGCCTCG------------GCGGGACGGTGGAGCTCGTGGCGGCGTTCACAGCGGTGTGCCTCGCGCTGTACGGGG
CGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTGCGCCGGACGGGGCCCGGCCCCGAGGCC
GGGCCGGCGACGGGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCGGCCATGCCGGTGTTCAGGTTCAA
GGCGGAGCCGCGCGGGGGCGGCGGCGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCTATGCAGGACGGCGACG
CGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTCGACGTCTGGCTGGGCGCGCACGCCACCTGC
CCCGTCTGCCGCGCTCGCCCTGC---------TCCGGCAGCGAAGGACGGCTCCAAGACGGCAGAGACCGCCGGACGGGG
GCCGGACCTGGAGAGCACGGTATAGCATGC--------------------------------------------------
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--------------------TTGAGGTACTTATCTTATGGGGT--TTGAGTACAGAATGTTTGTGTTAGCTTACTCCGAT
TGGGAGTCTGGGACCGACAATTTTGTCTCATGGCTTGTAAATTGTAATCCTACTTGACT--------TTGGTGATGATAA
ATAAAGAAGTTCTCCAGATCACTCCGTAACTAAGTTTCTTTTAGAAAGCTTTGTAATTAAGTTCATATGTGATGTATCCG
TAGATACTGACACCCTTTTTCCTAGTTTCAGGAGTAGCAATGTGGACACGTTATTACATAACAGCAGACTTGTGCTAATT
TGAAGGATTGTGATATTGGAATATATTGACCGCACCTCTTCATCTGTTCGAACTTTTGGATGAATTGATTAAAACATGAG
TTCAATACTCGAGACAAGTGGTTTTTTATTGTAGTTTCCGGTATATATTGCACTGTTAATTAATCAATCAACCAAACTGC
TAATTCCAATTGTGACCAGTCAGGTGAGGAAATTGTGGATGGATGACCCGTATGCACCGCTGAAAGGAACATGACAC---
----------------TACATGTTTTCAGTCCCATGTTCAAGAGTAGTCAGATAAGGATAAGATTAAGGCTTTATCCACT
ACCACAACGACACCTG-ATGTTTGAGCGAGCAAGTGCGCGAAAA--ACATTTCTTTAGCCACGAGAGTAAATATCTCTGA
CGCATGAAGCACCGAGGCTAGCGTCAATTATCGCATACATCAACCGATGCAGAGATTAAGTCAGGGGTGCTCTCACTTTT
GTAAACAAATAATTTAGTCATGTATTGCATCAAATTGAGCACGGCATATGGTGACAACAACACGTCAAGTCACCGCCACC
TTCAGAAATTCAGGGTCCCGGGGTGAAATGAAAAATAAGACCCTAATTTTTTAAAAATCCATATGACTAAAGCCATACAC
TTATAGAGAAAATCAATTCTCCCATGCACGGGAGGTTCCGTGCATGCGAGAGCCATTGATTTTTCTTAGAGATCCGATGC
CATGCAT
>chr2B_1
CAGGGCCGTACAACACATGCAACACAAATTTTCAAAAGCTATATATGTGTTGCAAAGATGTAAAATTCTGAATTCTTATC
TACTATTCTAGTAGTATCTTTTAGCTGGAACAAGTGATCCTTCTAGAATTCTTTTATACAGAATCTTGGAGTTTATCTCC
ATTAAAATATGTTTTTTTTCCCACGCATAGTTTTGAAGCCCTATGATATCAAATCAGGTA------TATATTAGGTTTGT
G-------TCAAGTGCCTTTTTAGAAGAATTTCTCTAGGCTAGTGCAACGTTACCCGAACTAGCACTCATGACATGGACA
TGATTCTGAAGATTCTACTTTCACCATTAAATTATAAATAAAGATGCTATTATTCGGCTTCATCCCAAGTCCTGCCATAT
TTTTCTGAGAGGGAAGTGCTGCCGCCTGGAAGAAGACTGGAGTGTGGAGCTGGCCGCTGGGTAGATTATTATTACTAGTA
AATGCTATTGGAACGAACTTGGTTAATCTATTCACTGACAGAACAGTATAG-----------------------------
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----------AACATAACTTGACTCTTGCTCCAGCACCGCCGGCCGTAACCTTACACGCCTACAAAACCATCATTGCTCG
CACCAAGCCAGCGGG--GAGAGAGCAAAGCAAGAA-CC-----GCACGGCACGACACTCTGCCAGTGGAGTGAC----A-
--TCCATCGAT---CGGCATGTCGACGGCGT---------CCGAGCAGCAGCAGCAGCCGCCGCCGCCGCACCGGGGGTC
GTGGAGCATCG------------GCGGGACGGTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCGCTGTACGGGG
CGGTGCTGTACCTCAACTATCTGTACGTACGGTGGAGCGGGCGGGACGGCGTGCACCGGACGGGACCCGACCCCGAGGCC
GGGCCGGCGACGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCCGCCATGCCGGTGTTCAGGTTCAA
GGCGGAGCCGCGCGGGGC------CGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCCATGCAGGACGGCGACG
CGGTGCGCGCCCTGCCTGGGTGCAGCCACGCGTTCCACGCCGGGTGCGTCGACGTCTGGCTGGGCGCGCACGCCACCTGC
CCCGTCTGCCGCGCGTGCCCTGCCCTCCCGGTTCCGGCAGCGAAGGACGGCTCCAGGACGGCGGAGACCGCCGGACGGGA
GCCGGACCCGGAGAGCCCGGTATAGCATGCGTGCGTGCGCCATCCCCGAGCTGTCAGGCCTGGTACAATGGGAGGTGCTT
AGGGAAGGTGTTTAGAAAAATAAATCAGGTTTTCTTAAGCATCGATGCTTATTTGTACAGGATAGACGCTTAACTAAGCG
CCTCTTCTGTAGAAATAGACATCGGTGCTTTAGAAAAACCCAGTTTATTTTTCTAAGCATCTCTCTAAGCACCTCCCATT
GCACAAGGCCTCAGTATGGGTTGAGGTACTTCTCTTATTATGAGGTTGAGTACATAATGTTTGTGTTAGCTTGCTTCTAT
CGGGGCCGAT--------AATTTTATCTCATGGCTTGTCAGTTGTAATCCTACTTGACTTGTGCATATTGGTGATGATAA
GTGAAGAAGTTCTCCAGACCACTC---------------------------TGTAATTAAGTTCGTACGTGATGTATTTG
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------CAATTGTGGCCAGTCAGATGAGGAAATTGTGGATGGATGACGCGTATGCACCGCTGAAAAGGACATGGCAATTC
CTTTCGTGGTGGACAATACATTTTTTTAATCCCATGTTCAAGAATGTCCAGATAAAGATAAGATTAAGGCTTTATACACT
ACCACAACGACACCTGAATGGTTGAGCGACCAAGTGCGCGAAATTTACATTTCTTTAACCACGAGAGTAAATATCTCTGA
CGCATGAAGCACCGAGGCTAGCGTCA------------------------------------------------------
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>chr2D_1
CAGGGCCGTACAACACATGCAACACAATTTTTCAAAAA-C---TATGTGTTGCAAAGATGTAAAATTCCGAATTCTTATC
TCTATTC----TAGTATCTTTTAGCTAAAACAAGTAATCCCTGTGTAATTTTTTTATACAGAATCTTCCAGTATATCTCC
ATTAAAACATATA---TTTTCCACGCATAG-TTTTAAGCCCTATGATGTCAAATCAGGTA------TATGTTAGGTTTGT
GTCAACTGTCAAGTGCCTTTTCAGAAGAATTTCTCTAGGCTAGTGCAACATTACCCGAACTAGCACTTATGACATGGATA
CGAGTTTGAAGATTCTACTTTCAACATTAGATCATAAACAAACTTT---------------------------------T
TTTTTTGAGAGGGAGGTGCTGCCACCTGGAAGAAGACTGGAGTGTGGAGTTGGCCACTGGGTAGATTC------CTAGTA
AATGCTCTTGGAACA---TTGGCTAATCTATTCACTGACAGAACATTGTAGT----------------------------
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-------AGTAAAATAACTTAACTCTTGCTTCAGCACCACAGGCCATTACATGGCACACCAACAAAACCATCATTGCTCG
CACCAAGCCA----ACAGAGAGAGCAAAGCAAGAA-CC-----GCACGGCACGACACTCTGCGAGTGGAGT-AC----A-
--CCCATCGAT---CGGCATGTCGACGGCGT---------CGTCGG------AGCAGCAGCAGCCACCGCACCGAGGGTT
GTGGAGCCTCG------------GCGGGACGGTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCGCTGTACGGGG
CGGTGCTGTACCTCAACTATCTGTACGTGCGGTGGAGCGGGCGGGACGGCGTGCGCCGGACGGGGTCCGGCCCCGAGGCC
GGGCCGGCGGCGAGGAAGAGGGACGGCGGAGGAGGGCTCGACGAGGCGGCGCTGGCGGCCATGCCGGTGTTCAGGTTCAA
GGCGGAGCCGCGCGGGGC------CGGCGGCGGC---GAGGAGTGCGCGGTGTGCCTGGGCGCCATGCAGGACGGCGACG
CGGTGCGCGCCCTGCCCGGGTGCAGCCACGCGTTCCACGCCGGCTGCGTCGACGTCTGGCTGGGCGCGCACGCCACCTGC
CCCGTCTGCCGCGCGCGCCCTGCCCTCCCGGTTCCGGCAGCGA-----------AGGACGGCGGAGACCGCCGGACGGGA
GCTTGACCTGGAGAGCCCGGTATAGCATGCGTG-----------------------------------------------
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>chr4D_854
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---------------------------GCGCCAGCACCACCGGCCGTTACACTACAAACCAAGAAAACCATCATTGTTCG
CACCAACCCACCCAACACACAGAGCAAAGCAAGAAACC-----GCACGGCACGCCACTGCCAGTTCCCTGCTTGAAGTGG
TGTCCATAGAT---CGGCATGTCGACGGCGGGAGGCCCGGCG---G------GGACGACGGTGTCGCAGCACGGGGGCGG
CGGCGGGGGGTGCTGCAGCTCCAGCGGGACGCTGGAGCTCGTGGCGGCGTTCACGGCGGTGTGCCTCGCACTCTACGGGG
TGATACTGTACCTCAACTACCTATACGTACGGTGGAGCGGGCGGGACGGCGTGCATCGGACGGGATCCAGCACGGCAGCC
GGGCCGGCG---AGGAAGAGGGCCGGCGGAGGGGGGCTCGACAAGGCGGCGCTGGCAGCCATGCCGGTGGTCAGATTCAA
GGCGGAGGCGCGT---GGCGACGGCAGCGAGGTAAGGGAGGAGTGCGCGGTGTGCCTGAGCGCCATGCAGGACGGCGACG
CGGTGCGCGCCCTGCCCGGGTGCAGGCACGCGTTCCATGTCGGCTGCGTCGACGTCTGGCTGTGCGCGCGCGCCACCTGT
CCCGTCTGCCGCGCGCGCCCTGCTCTCCCGGTTCCGGCAGCGAAGGACGGCTCCAGGAGGGCGGAGACGGCCGGACGGGA
GCCGGTCCTGGAGAGCCCGGTATAGCATGC--------------------------------------------------
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>SNPs
--------------------S-----------S-----S-----------SS----------------------------
----S------S--------------------SS--------------------S-------------------------
-------------S---------S---SSS------------S-----------S-----SSSSSS-------S------
-------------S-------------S------S---------------------------------S-----------
------S-------------------------------------------------------------------------
------------S---------------------------------------------------------------S---
----------------------------S-----------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---------S-----------------------S---------------------------------------
------------S--S----------------------SSSSS-------------------------------SSSS--
-----------SSS----------------------------------------------------------------S-
------------------------------------------------------S-------------------------
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------------S-------------------------------------------------------------------
--------------------S------------------------------------------S----------------
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--------------S----------------------------------------S------S----------------S
----------------S---------------------------------------------------------------
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-------------------------------S------SSS-S-----------S-----------------S--S-S--
S---SSSSSSSSSSSSSS------S-------------S-S---------------------------------------
S-S---------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S--S---------SS-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------S--------S-----------------------S-----------------S-S-----S--S---
---------------------S----S-S--------------S-SSS-------S-------------------S----
--------------------S--------S-------------S-------------S----------------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_859
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---------------------------------------TTTGGAACCAAACAGGGCCT---------------------
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>reverse_2678
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-------------------------------------AGCACGGCATATGGTGACAA-----------------------
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