>input_sequence_77406
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---------------------------------------------------------------ATGTCGTGGGAGGAGCC
CGGCATCCCGCAGCTGAGCCTGAGCGGCTTCAGCTCCCTCGCCTCCATCTCCAGCACCGCCGCTCCGCCCGCCCGCCTGC
CCTCCCTCTCCCTCAGCATCGGCACCGG---------CGGGGAGGACCAGCAGCCGGGCGTCAGCAGCGACGACGGCCAC
AAGAGCGTCCGGGCGATGAAGAACCGGGAGTCGGCGCTGCGGTCCAGGGCCAGGAAGAGAGCCTACACGCAGGAGCTCGA
GAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAGCTCAAGCGACAGTGCAAACAGGCACGCCTTCTTCTCCCCTTCT
TCTTCTTCCTCCAGCTCCATCTCTCTTTCTTGCTTGCTTGCTTGCTTGCTTGTGCATGGGTAATTAGTTAACTCATCAAT
CCCCTGCTTCTTTCTCCATCTCCTCAGCTTCAGTCGGAGATTGCCGCGCTCACCGCCCAGCAGGCAAGCAGCAAGCAGAG
CAGCCCGCACCGGAGAACTTCGTCCACTCAGTTCTAG-------------------------------------------
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>chr2A_1_TraesCS2A01G467100
ATATAAAGTCTGTATGGGATTTCGAGGCCCAGAGGCAGGGGAACGAGCTACTCTATTTCTCTACAGTGGTGAGTTGTACG
AGTATTTTTTTTAGCATCAGTACAAACACAAGTGCTCATATATACGCGCATACACTCACCTCTATGAACACACACACGCA
CACCCTACCTCTATGAGCATCTCCAAAAAACTGAGCCGGCACATCATCTTGAGATTTACGAAGTCACCGTAGGCACCTCG
TCGTCGACAAGAACGTCTTCTCTCACTGAAAGCGCATCACCGGAAATCCTGAAATAAATCCAGAAATAATGCAAGCATCA
GGATTTGAACCATGATGAATTAGGAATATCACTGTCCACCTAATCATCTCAAACACAGGTTGATTCGTGTTGTACGAGTA
CTAGTGTGATGGACTCGCTGTAGTGAGCGAGCGCGACGAGACGAATGGAGTGACACACCGACGACGATGGCCGTACGTGC
ACTGAAGCCCGTGGCTGTGCGTGTGCCGCGAAAGGCGTTCTGATTCAGAGGTCCTGCACGCACGCACGCAACACGACTAC
T-TTTCTGGCGGGACGTGATGGATGATGCCATCTCATCCAAATCCAATCCGAGGACCAATGAAGCTGGGCCGTCGGCGTC
TTCCGTCTGGGCCCGCCCGTCC----CTCTGCCTCACTCCTGTGGCTGCTTTGCTGCAAAGCAGCGAGC-------TCAC
GTGGTGTGTTTGATTCTGGCTCAGATTTGCATACTTAACCCGTGCGCCTTTGTGTCACTAACACGCGGGCCATACGGTTC
GCGGCCCCACACGTCAGTGACCCTAAATGACCTGACTTAAAGTCCGCGAATGCCACCCCGTGTGATTCGATGGCCCGCCC
ACCTAGTACCTCCCTATAGCTA------CGTCTTCATCATCCTCTTCTTGACCTGTAGCTCCTCTGCTCCATCCCGTCTA
CT-----GTCTACACCACACCACAGTGCGCACACCACACGGGGGAAGCGGGGCGTAGATAGGGATGTCGTGGGAGGAGCC
CGGCATCCCGCAGCTGAGCCTGAGCGGCTTCAGCTCCCTCGCCTCCATCTCCAGCACCGCCGCTCCGCCCGCCCGCCTGC
CCTCCCTCTCCCTCAGCATCGGCACCGG---------CGGGGAGGACCAGCAGCCGGGCGTCAGCAGCGACGACGGCCAC
AAGAGCGTCCGGGCGATGAAGAACCGGGAGTCGGCGCTGCGGTCCAGGGCCAGGAAGAGAGCCTACACGCAGGAGCTCGA
GAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAGCTCAAGCGACAGTGCAAACAGGCACGCCTTCTTCTCCCCTTCT
TCTTCTTCCTCCAGCTCCATCTCTCTTTCTTGCTTGCTTGCTTGCTTGCTTGTGCATGGGTAATTAGTTAACTCATCAAT
CCCCTGCTTCTTTCTCCATCTCCTCAGCTTCAGTCGGAGATTGCCGCGCTCACCGCCCAGCAGGCAAGCAGCAAGCAGAG
CAGCCCGCACCGGAGAACTTCGTCCACTCAGTTCTAGCAACGCTACATCAGGACGCACGAGGGCTTAATTTCCGTCGCTA
GCTAGCAATTGATTAGTATCAATAAGATCTAAGGTGCACTGGTAGTTGGATTTTGGCTTCAATTGACTCAACTGCCCGAT
CGATATGCCAGCGCGTGGGCTTTACTTGCGTTGGCTGATCCGTTCATCTCGTGTGCATTTCTCTGCATGTATTGCTGCGT
GCACTGGTTGGCCTGGATGCCCGGACCGGAGCACAC--GCGACCTGCCTATGATTAATTGTGCTGCAGAATACCTTCATT
AATAATTCTGAATCGCAATTAAATTGTGC-TTGTTAGCTTCAAAATTGGATCTGGGTGGCCCCTGGCTGGGTT-------
-GTTGAATTGTGCATCTCCCATTTAATCACCAGCCAAAATCATCATCGATTGCGACTGTCATCTGGAACGAAACTACTAT
ACGGACGACAGTACCCTGGCCGATAGCTGGACGATGTTGGATCGAACGGTGTTGTTCAGTTTTGCTTTTCACGTGAACGG
CTTCCTGTGCTACATGTCTGCAAATCGTCCAATGTTTGTCGTCTGTGTAGCAGCGTTCCATCCGGAAA------CT----
--AAGCCCCCGTCATCGTTGTCGTGGTGGTAAGGTGGTTGCTCGAAAGCAAATGCTTCTTCTTTCGTGTACCCATCTTGT
GTGAGGCATGTGCACGGCCGAATGACAGACTTGAGCCATACCATGGTGGGCATGAATGTACTGTGCTTGTGTGTGCATG-
--GTCGACTGCGCTAGTACTAGGCATCGGGTGAGAGAAATTCTAGTGCCACTGATCGTGAGGGCGTTGTCTTGGTTGCTC
ATGAGCTCCCTGGTGTTGAAATGGTTGATGTTGGACCCGG----------------------------------------
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-------------------------------------------------------TGCTTGGTTGGGGCTTCTCAGGGCG
TATGCATCCATGCAGGGCCGGGCCGGCAAAATCTGGGCCCTGTGCGAAACTAAAAAATGGGGCCCTATCTTACTAGAATA
ATAAACTACCAAGCAATTATAAAATATGTGATATATTG
>chr2D_3
--ATAAAGTCTGTATGGGATTTCGAGGCCCAGAGGCAGGTGA--------------------------------------
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-------------------------------------------------------------------------ACGAGTA
CTACTGTGATGGACTCGCTGTAGTGAGCGAGAGCGACGAGACGAGGGGAGTGGCACACGATGCGATGGC-CCGTACGTGC
AC-------------TGTGCGTGTGCCGCGAAAGGCGTTCCGATTCAGAGGTCCTGCACGCACGCAAGACGAGTACTCCT
ACTTTCTAGCGGGACGTGATGGATGATGCCATCTCATCCAAATCCAATCCGATGAGCAATGAAGCTGGACCGTCGGCGTC
TCCCGTCTGGGCCCG----TCC----CTCTGCTTCACTCCTGTGTCTGCTTTGCAGTAAAGCAGCGAGC------TTCAC
GTGGTGTGTTTGATTCCGGTTCATATTTGCAGACTTAACCCGTGCGCCTTTGTGTCACTAACATGCGGGCCATTCGGTCC
GGGGCCCCACACGTCAGTGACCCTAATTGACCTGACTTAAAATCCGCGAATCCCACCCCGTGTGATTCGATGGCCCGCCC
ACCTAGTACCTCCCTATAGCTA------CGTCTTCATCATCCTCTTCTTGACCTGTAGCTCCTCTGTTCCATCCAGTTCC
ACTGCACGTCTACACCACACCACAGCGCGCACACCACACGGGC------GGGCGTAGATAGGGATGTCGTGGGAGGAGCC
CGGCAGCCCGCAGCTGAGCCTGAGCGGCTTCAGCTCCCTCGCCTCCATCTCCAGCACCGCCGCTCCGCCTGCCCGCCTGC
CCTCCCTCTCCCTCAGCATCGGCACCGG---------CGGCGAGGACCAGCAGCTGGGCGTCAGCAGCGACGACGGCCAC
AAGAGCGTCCGGGCGATGAAGAACAGGGAGTCGGCGCTGCGGTCCAGGGCCCGGAAGAGGGCCTACACGCAGGAGCTCGA
GAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAGCTCAAGAGACAGTGCAAACAGGCACGCCTCCTTCTC------T
TCT---TCCTCCAGTGCCATCTCTCTTT--------CTTGCTTGCTTGCTTGTGCATGGGTAATTAGTTAAT---TCAAT
CCCCCGCTTCTTTCTCCATCTCTTCAGCTTCAGTCGGAGATTGCTGCACTCACCGCCCAGCAGGCAAGCAACAAGCAGAG
CAGCCCGCACAGGAGAACTTCGTCCACTCAGTTCTAGCGGCGCTACATCAGGATGCACGAGGGCTTCATCTTCCT--CTG
GCTAGCAATTGATTAGTATTAGTGG----------GCACGAGTAGTTGGTTCTTGGCTTCAATCAACTCACCTG-CCGAT
CGATATGCCAGCGCGTGG--------------------TCCGTTCATCTCATGTGCATTTATCTGCATGTATTGCTGTGT
GCACTAGTCAGACTGGATGCCTGGACCAGAGCACACATGCAACCTGCCTGCGATTAATTGTGTTGCAGAGAACCTTTATT
AATAATGCTGAATCGCAATCCAATTGTGCTTTGTTAGCTTCAAAATTGGATCTGAGTAGTCCCTTGTTGGGTT-------
-GCTGAATTGTGCATCTCCCATTTAATCAACAACCAAGATCATCATCGATTGCGACTGTCA-------------------
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-----------------------------------------------------------ATCCGGAAACTGATTCGACGA
TGTAGCCTCCGTCGTCTTTGTCGTGGTGGA--------TGCTCGAATGCAAATGCTTCTTCTTTCGTGTACCCATCTTGC
GTTTGGCATGTGCACGGCCGAATGACAGACTTAAGCCATACAA-GGGGGGCATGAATGTACTGCGCTTGTGTGTGCACGG
CCGTCGACTGCGCTAGCACTGGGCATCGGGTGAGAGAAATTCTAGTGCTACACATCCTGAAGGCATTGTCTTGGTTGCTC
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>chr2B_468
T-------------------------------------------------------------------------------
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-------------------------------------------------------------------GC-CCGTACGTGC
ACTGAAGCCCGTGGCTGTGCGTGTGCCGCGAAAGGCGTTCTGATTCAGAGGTCCTGCACGCACGCAAGACGAGTACTCCT
GCTTTCTGGCGGGACGTGACGGATGATGCCATCTCATCCAAATCCAATCGGATGAGCAGTGAAGCTGGACCGTCGGCGTC
TTCCGTCTGGGCCCG----TCTCTCTCTCTGCTTCACTCCTGTGTCTGCTTTGCAGCAAAGCAGCGAGCAGAGAGTTCAC
GTGGTGTGTTTGATTCCGCTTCAGATTTGCAGACTTCAGCCGGGTGGTTTTGTGTCACTAACATGCGGGCCATTTGGTTC
TCGGACCCACACGTCAGTGATGCTAAGTGCTCTGACTTAAAGTCCGCGAATCCCACCCCGTTTGATTCGATGGCCCGCCC
ACCTAGTACCCGCCTATAGCTACACCTTCGTCCTCATCATCCTTTTCTTGACCTGTAGCTCCACTGTTTCATCCAGTTGC
ACTGCACGTCTACACCACAGCACAGCGCGCACACCACACGG-----GCGGGGCGTAGATAGGGATGTCGTGGGAGGAGCC
CGGCAGCCCGCAGCTGAGCCTCAGCGGCTTCAGCTCCCTCCCCTCCATCTCCAGCACTGCCCATCCGCCTGCCCGCCTGC
CCTCCCTCTCCCTCAGCATCGGCAACGGTAGTGCCGACGGAGAGGATCAGCAGCTGGGCGTCAGCAGCGACGACGGCCAC
AAGAGCATTCGGGCGATGAAGAACAGGGAGTCGGCGCTGCGGTCCAGGGCCAGGAAGAGGGCCTACACGCAGGAGCTCGA
GAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAACTCAAGAGACAGTGCAAACTGGTACGCCTTCTTCTC------T
TCTTCTTCCTCCGGTTCCATCTCTATTTCTTGG--------TTGCTTGCTTGTGCATGAGTAATTAGTTAAC---TCAAT
CCCCAGCTTCTTTCTCCATCTCTTCAGCTTCAGTCGGAGATTGCTGCACTCACCGCCCAGCAGGCAAGCAACAAGCAGAG
CAGCCCACACAGGAGAACCTCGTCCACTCAGTTCTAGCAACCGCTACATCA---------GGGCTGCATTTTCCT--CTA
GCAAGCAATTCATTAGTATTAGCA---------GTGCACTTGTAGTTGGTTCTTGGCCTCAATCAACTCAGCTGCCCGAT
CGATATGCCAGCGCGTGG--------------------TCCGTTTATCTCATGTGCATTTATCTGCATGTATTGCTGTGT
GCACTAGTCAGACTGGATGCCTGGACCAGAG--CACATGCAACCTGCCTGCGATTAATTGTGTTGCAGAGCACCTTTATT
AATAATGCTGAATCGTAATCCAATTGTGCTT-GTTAGCTTCAGAATTGGATCTGAGTAGCCCCTTGTTGGGTAGTTGATA
AGTTGAATTGTTCATCTCCCATTTAATCACCAGCCAAAATCATCATCGATTGTGACTGCCA-------------------
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-----------------------------------------------------------ATCCGGAAACTGATCCT----
--TAGCCCTCGTCATCGTTGTCATGGTGGT--------TGCTCGAATGCAAATGCTTCTTCTTTCGTGTAGCCATCTTGT
GTGTGGCGTGTGCACAGCCGAATGACACACTTAAGCCATACAA-GGGGGCCATGATTTTACTGCGCTTGTGTGTGCAAG-
--GTCGACTGCGCTAGCACGAGGCATCGGGTGAGAGAAATTCTAGTGCTACACATCCTGAAGGCATTGTCTTGGTTGCTC
GTGAAGTCTCCGGTGTTGAAATGGTTGATGTTGGACGCGGTGCTCGGTTGGTGTTTCTCAGGTTGTATACATCCGCAGAG
CAATGTACGACATGATCGACGCTTCCTCCACGGCTTCTTCCTCTGGCCCGATCATGTCCTGGAACCCACTTGTTGACTCT
CTAGGAGTTTAAGAGCAACTCCAACGGGCCGACCCAAACAGACACCGCTTTTGTGTGCTTTTTGTCCGTTTGGGTTGACC
AGGCGGACATCCGCGTCCGCATTATGAAATGGGTTGGCTTGGCCGCCCAACGGAGGGGCAGACCCAAATGTGCGGGCATG
TAAAAAAAAAGGCACACGAAATAAACTTAAAATAAACATAATTACATATAAGTGGCCAGTCAAACGCCGGCCAAAGTCCA
CTTAAACATAATTAAACATTAATTAAAACATAAAAAGAGTCTGCACCCGCCTTCTCCGCCCCGCGTGCTGCCCTAGACGC
CGTGGCCTTGCCCTTGCCCTAGCCATCGACGCCGCCGTCGCCATCGCCGGTGAGATCGATGAAGACGGGAGCAGGGCCTG
CCCACCCGAACGCCGCCTGGTATGCTGCCAGGGCAGCCACCTCCGGCGTCTACTGGGATGGTGGCATTGCGGCTAGGCGC
GCGCGCGCGCTCCTCCTCCTCCTCCTCGAGCCGAAGCGCCTCCGCATCGTGCTGGAGCATGGCCTCGTAGCGCATCTGGT
GCTCGCCGTCGTCCTGCTCCTGCCAGAGCCCATGCGCCTTCCAGCGCTCGAGGTGGGCGGCCTCCTGCTCCGGCGTCGCG
ATGAAGTGGACGGGGGGCGCGCTCACCAACTCGCGGTACTGGCCCGTCCACGAGTAGGCCTCCTCCGGCCAAGTGGGTGG
AGGCGGGGAGCGCTTCCACGTCGGCTCCGACTCCGGCTTGGGCTGGATGGGCGGCGACGGTGGCGGTGGCGGCACGAACA
TTGGGGAGTGGACGGAGTCCCGCGCCGCCGACAGGGCGAGGGCTTGCTCCAGCCCATCCCAGCGCGCGTCCTCCTCGAGG
CGGCTAGCCTCCAGCGCCTGCTGCAGGGCCACCTCGAGGGCGGCCTGGTACTCCGCCTCCGCCTCCTCGTCCTCCGGCTG
TACCTGCGGGAGCGGCGGTGGGAACGGCGGTGGGACGGCGTCGACGCCCGAGCGCCGTTGCTCCTCGTGTTCGAGGACGA
ACCACGCCTCCCAGTTGGGAGAGTCGGCGGCGTACTCGGGCAGCCGACATTGCTCCGGCGTGAGCTGCGCGCGGCGCCGG
CGCACCTCCTCGTCGTGCGCCCGCTGGCTCCGCGGAACCGCCGGCACCGGGATTCGCTGGGGATCCAAGTGCCAATGGTG
CACAGCGTCACGTCGGGGTAGGGAGGGGCTGCCTGTACTCCCAGTGCCACCGCGCTTGGTGCACCGGGATGTGCAGGCGC
CGGCGTTCCGGGCGGAAATGCGCCGGTGGTGGAGGGGGAGGGGGAGCACGGGAGGACGAGGCGCCGGGGGTGCACTTGCC
CTTGGCCTTGCCATTGTTGCCGAAGATGCCCATGGTGGCCTAGGGTTTTCTGTCGCCAGCGAGGAAGCAAGGGAGCGGTG
GGGGGCCAGATGTGGACGGGAGAAGTGGATGAGCCTCCCCCCCGCCCCGCCGCACGCGTGCTTAAAAAAGGACACTTCCT
GAGGCTGACAAGTGGGCCCGCTGTCGGTGGTCGTCATAAGTAAGACGACCGGTGGCGGTTGGGTGGCCTACATGTGGGGA
CGCGGCGGATACCGAGGAGACGTATGGCGCATCTGCTTCGCGTCCGCGCCGACGCATTCCAGGCGCAATTTTGGGCTGGA
AACGGGTCCGCGCGGACGCGAGGCGGACACAATTTACGTTTGAGTCGCCGCATTGGGCCTCTATTTTTGTCTGCGCCGAC
CCAAACAAACGCAGACGGATAAAATGGATCGCCCCATTAGAGTAGCTCTATGGCGACGGGAGGGGGTACGCCGATTGGGT
TTGTGCTAGAGTCGTGGCGCCACGAAGGTCTATCGTGTCTGTCAAGACACTGTCTAGGTGTTTTGTGTCTCGTCGCTTTT
CATGGCTGGAGTTCGGGCTAGACGAGGTTAGTGTTGCGGTTTTTTCTTTTGTTTTATTTTTTTCCCTCTTCTTATCCTTC
ATGTGATTCCTCTAGGTGTATGTTTGTTCTTCTCTACCTATCAATAAAAAGAAATACATAATTCTTTGCGTATTTGTGAA
AAACACAGCGAACACACTAGCACACAAATGAAAATTTGGTTCGCTCCTTGGGGCGGCACGTGCGGTTCTTTCTTTTGTTC
TTTCTTGTGTGTGCACGATCGATTGCGCTACCACTAGGCATCGGGTGAGAGAAATTCTAGTTCTACAGATCGTGAGGGTG
TCGTCTTGGTTGCTTGTGAAATCCCCGGTGTTAAAATGGTTGATGTTGAATGCGATGCTTGGTTGGGGCTTCTCAGGGTG
TATGCATCC-----------------------------------------------------------------------
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>SNPs
SS-------------------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---S---------------------------S------------SS------S-----SSSSSSSSSSSS----------
------------------------------------------------------------------S-SSSSSSSSSSSS
S---------------------------------------------------S--S------------S-----------
---------------SSSS-------------S-----------S---------S-------------------------
----------------S--S-----------S-------------------------------S---------S------
--------------------------S------------------------S----------------------------
------------------------------------------------------------------S-------S--SSS
SS-----------------------S----------------SSSS----------------------------------
-----S---------------------------------------------------------------S----------
----------------------------------------S-------------S-------------------------
------------------------S----------------------------------S--------------------
-------------------------------------------S-----------------------------SSSSSS-
--------------S-----------------SSSS------------------------------------SSS-----
----S-----------------S---------------------S--S----------------------S---------
----------S------------------------------------------S------------S----S-S-SS---
-------------------S-S--SSSSSSSSS-------S--------S-S-----------SS-----S---------
------------------SSSSSSSSSSSSSSSSSSSS------------S---------S----------------S--
-----S--SS-S---------S-----S------------S--------SS-----------S------SS-----S---
------S------------SS---------------------------------S--S------S-S-------------
-------------------------------------------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
--S---------------------------SSSSSSSS--------S---------------------------------
---S----------------------------S--------S-S--S----------------S-------------S--
----------------S-------------------------------S--SS---S---S---S---------------
S---SS--S-S-------------------------S-------------------------------------------
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------------------------------------------------------------------------------S-
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_461
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-----------------------------------------CGAATGGAGTGACACACCGA-------------------
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>reverse_2064
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---------------------------------------------------------------GCTTTTCACGTGAACGG
CTT-----------------------------------------------------------------------------
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