>input_sequence_77403
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-----------------------------------------------------------ATGGCACGGCTCTACCACCTC
ACCCTCCTCTGGGTCTTCCTCTTCCTGCTCCTCACCGGCCTCGTGGCTGCTGATCTGTCCAGA------------GGGAA
GAAGGTCGG------------GAAGAAGGTGACCATGACCGTGCGGTACCCGGCTGAAGACTCGGGGGAGAAGATCACGA
TCTCGG----------------------------CGCACCTCGTCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACAGCGACGACTACGAGCCGTATGTCTCTCTGTCTCT-----------------------------------------
------------TTTCTCCAACTCATCCTCACAAATTA-AGCACATACTCCAACGGGTCGTGTGGT----------TTTG
CTTGGTTTAATAATTTTTTTAGCTAAGCCTGCGGTCGATCTG--------CAGCATCGTTTTCGCCGTGAAAATCCTTGT
CTCGGCGGCCCTGGAGAAGGTAGGAGATCCGCAGGCCTCTCTATCCAAGGTAACGCACATTTT-GCCCCTCCCTATCTCA
TCCATTGGTTCGGATTTCAGAAC---------------------GCAAATGTAAGC-------TACTGACCTTTGCCTAA
TTGTTTCTCAGATGTAG---------------------------------------------------------------
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----------------------
>chr1D_1_TraesCS1D01G062100
TATCTTCTTGATATCTTGAAAAGTTGTTTCCTCGTATGCTGGAAATGTGACTTTGGGAGGAACACTATACTCCACACCCA
TAGATCCATGTTACACTTCACCATCAAGATACGTTAGAACAATTAACATGTTCTCGGATTCACCTGCAGACATGAACATG
TAGGAAGT--AGATTAAAATCTTAAATTGATTTACTATCGACTCAAGGTTGAATTTTTCACGACCTATCAGTTCTCATAA
ACTAGACAATTACCAATTATATTACCAGGAATAAAAATCCAATCATCTATATATTGTATGCAGTACACTTGCAACCATGG
AACGAATTATAC-AAAAAA--CTTGATAGAGGAGATGCAATACGGC----GTACAACTCACATGAGCCAACTACAGGTCA
AGTGGATGATCCTAAATTCCTAATGATGAGCGGCCGGCGAGACAACACGACTCTCATGA----TGATTGCTGATGTTGGC
CGCTGGAGCTTGCTTACGAGACGTCTAGATCAAAAGCGACGGCTGCATGCGTATTAGGGTTT-GCAGATCAGAAACTGTT
ACATA--TATCAG-----AG-AAG-AGAAAAGAGGACTCGGTTGAGCCTAATAAGTCGAGCCACATAGCTGGACGTCGTG
CATAAGAGCGTCCATAAAGGAACGCACTTAGCAATGGCGTCCAGACTTGGACGCTGCTCTTCATAGCGT-CTTACTATTC
T-GACAATTTCCACCTGCCCTTTACCACTTCCGTAATTACAGAGTTTTTATTTATTATTAATAAAAAAATCGGCACAGTT
GAGAAGGCAAAATCATCATGTTAGATAAGCGAGGGTAAAACTGCAATTGGAATTCACACAGTGGCAACGGGC--------
-------------------------CAACGGCCAACAGTACATCTGCAGCTGTTCACGCGGCTCAC-----------GCA
GCTCTGCTCTAACC--TAACCGGTCC--ATATATGC----TTCTCTCGTCTTCTTGGCCGGC-----------CACGCAG
TTGAAGTAGCAAGGAGTAGGTTTTGTGCACTCC---GCCCGA--------AGTCTGCCCATGGCACGGCTCTACCACCTC
ACCCTCCTCTGGGTCTTCCTCTTCCTGCTCCTCACCGGCCTCGTGGCTGCTGATCTGTCCAGA------------GGGAA
GAAGGTCGG------------GAAGAAGGTGACCATGACCGTGCGGTACCCGGCTGAAGACTCGGGGGAGAAGATCACGA
TCTCGG----------------------------CGCACCTCGTCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACAGCGACGACTACGAGCCGTATGTCTCTCTGTCTCT-----------------------------------------
------------TTTCTCCAACTCATCCTCACAAATTA-AGCACATACTCCAACGGGTCGTGTGGT----------TTTG
CTTGGTTTAATAATTTTTTTAGCTAAGCCTGCGGTCGATCTG--------CAGCATCGTTTTCGCCGTGAAAATCCTTGT
CTCGGCGGCCCTGGAGAAGGTAGGAGATCCGCAGGCCTCTCTATCCAAGGTAACGCACATTTT-GCCCCTCCCTATCTCA
TCCATTGGTTCGGATTTCAGAAC---------------------GCAAATGTAAGC-------TACTGACCTTTGCCTAA
TTGTTTCTCAGATGTAGCTTCACGG------------------------------------TGCTCAGTGGTGGTTGCAT
GCCCAGTCAG--------TGCACATTGGAGATGGAGATCCTCTTTACTTTCGTCTCAGCGAGAATGCATTAGGTTCCTTT
TACTATTTTGCTGTAGTACCGTCTGCAAGTAGCATTGCCCATTCGGGGAGCGTATCCTATGGGCTATTATTAGGATG-TA
GCAATGTGGAATTGTGCATGGTGCTGGAGTCTAACTTCAGCTATGTCTGTGTATCTTGGTTTCTGTAATCTTTCGGGTTC
GAGGAACAAAATAGTTCGTTGTTCTTCAATTTATTTCTGCTCAGTTTCCATCAAGTGGAGGATCTCTATTGTGTTTTATT
AACAGATTAAATAGAGCATAATTGCACAAGTAAAAGACACAGAGATACTGGCAAGGAACCGATGCGATTAAAAACAGAGA
GATACACTAGCTAATAACACCATGATGACAGAGTTGTCTTATTATTTACGTGTCTTTTTTTCTTTTCTTAAGTTGGATAC
TCGGAACTCGATTAATTAAACAAAATAAAAGAGAGATGTCCAGTTAATTTATGAAAAGCGAACAGAAGCCGTTACAACAC
ACCCCTGCCTTGCTGCAGTGTCCCCATCTCTGACTCGGACTCCATCTAATCCACCGGGGGTCAAAGCAAGAAGGCTCCCC
AACCTATACCTGTCAAGCTATGAACTCGCCTGCGCCTAGGACGTTGTGGCGAGACGCTCACCGCCAGCTCCGGCTTGGCC
TTGGGGCTTCGCTCCTTTCCCATCTAAATCGACTCACACAATTTGTAATTTTAGCCAATTGAGAATTAACAAAACCGAAA
TTCAATTGGTTGTAGAAAATATGAATGAACACCCTTTTCTCGTGAATCAAAGAATCTATTTCAACTCTGTACCAATGAGC
AAACAGAAGGCACATGCATTCAACACACACTTTGACTGAGAAGCGAGAACCCAGCCACCAGCAGCCGTTTGGTAGACGGT
GCTACTTGTGTTGAGGCGGCAG
>chr5A_5
----TTCTTGATATCTTGAAAAGTTGTTTCCTCATATGCTGGAAATGTGACTTTGGGAGGAACATTATACTCCACATTCA
TGGATCCATGTTGCACTTCACCATCAACATACGTTAGAACAATTAAGATGTTCTCGGATTCACCTGCAGACATGAACATG
TAGAAAGTAAAGATTAAAATATTAAATTGATTTACTATCGACTCAAGGTTGCATTTTTCACGACCTATCAGTTCTCATAA
ACTAGACAATTACCAATTATATTACCAGGAATAAAAATCCAATCATCTATACATTGTACGCAGTACACTTGCAACCATGG
AACGAATTATAC-AAAAAAAACTTGATAGAGGAGATGCAATATGGC----GTACAACTCACATGCGCCAACTACAGGTCA
AGTGGACGATCCTAAATTCCTAATGATGAGCGGCCGGTGAGACAACACGACTCCCATGA----TGATTGTTGATGTTGGC
CGCTGGAGCTTGCTTACGAGACCGCGAGATCAAGAGCGACGGCTGCATGCGTATTAGGGTTT-GCATATCAGAAACTGTT
ACGTA--TATCAG-----AG-AAA-CGAAAAAAAGACTCGGTTGAGCCTAATAAGTGAAACCACATAGCTAGATGTCGTG
TATAAGAGCGTCTATAAAAGGACACACTTAGCAATGGCGTCCAGGTTTGGACGCTCCTCTTCATAGCGTCCTTACTATTT
T-GACATTTTCCACCGGCCCTTTACCACTTCCGTAATTACAGAGTTCTTATTTATTATTAATAAAAAGATC---------
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----------------------
>chr1A_5
----TTCTTGATATCTTGAAAAGTTGTTTCCTCATATGCTGGAAATGTGACTTTGGGAGGAACACTATACTCCACATCCA
TGGATCCATGTTGCACTTCACCATCAACATACGTTAGAACAATTAAGATGTTCTCGGATTCACCTACAGACATGAACATG
TAGGAAGTAAAGATTAAAATCTTAAATTGATTTACTATCGACTCAAGGTTGCATTTTTCACGACCTATCAGTTCTCATAA
ACTAGACAATTACCAATTATATTACCAGGAATAAAAATCCAATCATATATACATTGCGTGCAGTACACTTGCAACCATGG
AACGAATTATAC-AAAAAAA-CTTGATAGAGGAGATGCAATATGGC----GTACAACTCACATGCGCTAACTACAGGTCA
AGTCGATGATCCTAAATTCCTAATGATGAGCGGCCGGTGAGACAACACGACTCCCATGCATGCTGATTGTTGATGTTGGC
CACTGGAGCTTGCTTACGAGACCGTGAGCTCAAGAGCGACAGCTGCATGCGTATTAGGGTTT-GCAGATCAGAAATCGTT
ACGTA--TGTCAG-----AG-AAAAAGAAAAAAAGACTCGGTTGAGCCTAATAAGTGAAACCACAAAGCTAGATGTCGTG
CATAAGAGCGTCCATAAAGAGACACACTTAGCAATGGCGTCCAGGCTTGGACGCTCCTCTTCATAGCGTTCTTACTATTT
T-GACATTTTCTATCGGTCCTTTACCACTTTCGTAATTACAGAGTTCTTATTTATTATTAATAAAAAGATC---------
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----------------------
>chr6A_26
-------------------------GTTTCCTCAGATGCTAGAAATGTGACTTTCGGAGGAACACTATACTCCATACCCA
TGGATCTATGTTGCATTTTGGCATCCACATACATTAGAACAATTAGCATGTTCTCCAATTCACCTGCAGGCATGAACATA
TAGGAAGTAAGCATCAAAACCTTGAATTGATTTACTATCGACTCAAGATTGATTTTTTCACGACCTATCAGTTCTCATAA
ACTAGCCAATTACCAATTATATTACCAGGAATAACAACCCAATCATCTATACAATGTACTCAGTACACTTGCAACCATTG
AATGAATTATAC-AGAAAA--CTTGATAGAGAAGATGTAGTATGGCCGTGGTACAATTCACATATGCCAGCTACAGGTCA
AGTGGACGATCTTAA--------TGACGAGCGGTCG------------------TATGA----TGATTTCTAATGTTAGC
CGTTGGAGCTTGCTTAGGAGATGGCGAGATCAGGAGCGGCGACTGCATGCGTATTAGGGTTT-GCAGATCAAAAACAGTT
ACGTA--TATCAAAGAAAAG-AAAAAGAAAAGATGACTCGATTGAGCCTAATAAGTCGAACCACATAGCCGGACGTCACG
CATAACAGCGTCCATAGAAGCACGCACTTAGCAATGGCGTCCATGATTGGACGCCGCTCTTCATAGCGTCCTTCCTATTT
T-GACAATTTTCACAGGCCCTTTACCAGTTCTGTAATTACAGATTTATTATTTATTATAAATAAAAAAATCAGCA-----
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----------------------
>chr1D_27
TTTCC---------------------------CATATGCTGAAAATGTGACTTTGGGAGGAACGCTATACTCCACACCCA
TGGATCCATGTTGCACTTCACCATCCACATACGTTAGAACAATTAACATGTTCTCGAATTCACCTGCAGACATGAACATG
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTACTATTGACTCAAGGTTGAATTTTTCACGACCTATCAG--CTCATAA
ACTAGACAATTACCAATTATATTACCAGGAATAAAAACCCAATCGTCTATACATTGTACGCAGTACACTTGCAACCATGG
AATGAATTATAC-CAAAAA--CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCAGGTCA
AGTGGATGATCCTAA--------TGATGAGCTG-CGGTGAGACAACACTACTCCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGACGGCGAGATTAGGAGCGACGGCTGCATGCGTATTAGTGTTTTGCGGATCAAAAACTGTT
ATGTA--TATTAG-----AG-AAG-AGAAAAGACGACTCGGCTGAGCCTAATAAGTCAAACCATATAGCTGGACATCATG
CGTAATAGCGTCCATAAAGGGACGCACTTAGCAATGGCGTCCAGGCTTGGACGCTGCTCTTAATAGGGTCCTTACTATTT
T-GACAATTTTCACCGGCCATTTACCACTTCTGTAATTACAGAATTCTTATTTATTATTAATAAAAAATTCGG-------
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----------------------
>chr1D_27
TTTCC---------------------------CATATGCTGAAAATGTGACTTTGAGAGGAACACTATACTCCACACCCA
TGGATCCATGTTGCACTTCACCATCCACATATGTTAGAACAATTAACATGTTCTCGAATTCACCCGCAGACATGAACATG
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTACTATTGACTCAAGGTTGAATTTTTCACGACCTATCAA--CTCATAA
ACTAGACAATTACCAATTATATTACCAGGAATAAAAACCCAATCATCTATACATTGTACGCAGTACACTTGCAACCATGG
AATGAATTATAC-CAAAAA--CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCAGGTCA
AGTGGATGATCCTAA--------TGATGAGCGG-CGGTGAGACAACACGACTCCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGACGGCGAGATTAGGAGCGACGGCTGCATGCGTATTAGTGTTTTGCGGATCAAAAACTGTT
ATGTA--T--CAG-----AG-AAG-AGAAAAGACGACTCGGCTGAGCCTAATAAGTCAAACCATATAGCTGGACATCATG
CGTAATAGCGTCCATAAAGGGACGCACTTAGCAATGGCGCCCAGGCTTGAACGCTGCTCTTAATAGCGTCCCTACTATTT
T-GACAATTTTCACCGGCCATTTACCACTTCCGTAATTACAGAATTCTTATTTATTATTAATAAAAAATCG---------
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----------------------
>chr5A_27
TTTCC---------------------------CATATGCTGAAAATGTGACTTTGGGAGGAACACTATACTCCACACCCA
TGGATCCATGTTGCACTTCACCATCCACATACGTTAGAACAATTAACATGTTCTCAAATTCACCTGCAGACATGAACATG
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTACTATTGACTCAAGGTTGAATTTTTCACGACCTATCAG--CTCATAA
ACTAGACAATTACCAATTATATTACCAGAAATAAAAACCCAATCATCTGTACATTGTACGCAGTACACTTGCAACCATGG
AATGAATTATAC-AAAAAA--CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCAGTTCA
AGTGGATGATCCTAA--------TGATGAGCAGCCGGTGAGACAACACGATTCCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGACGGCGAGATTAGAAGCGACGGCTGCATGCGTATTAGTGTTTTGCGGATCAAAAACTGTT
ACGTA--TATCAG-----AGAAAG-AGAAAAGACAACTCGGTTGAGCCTAATAAGTCAAACCATATAGCTGGACATCATA
CGTAACAGCGTCCATAAAAGAATGCACTTAGCTATGGCGTCCAAGATTGGACGCTGCTCTTAATAGCGTCCTTACTATTT
T-GACAATTTCCACTGACCATTTACCACTTCCGTAATTAGAGAATTCTTATTTATTATTAATAAAAAAA-----------
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----------------------
>chr1A_27
TTTCC---------------------------CATATGCTGAAAATGTGACTTTGGGAGGAACACTATACTCCACACCCA
TGGATCCATGTTGCACTTCACCATCCACATACGTTAAAACAATTAACATGCTCTTGAATTCACCTGCAGACATGAACATA
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTACTATTGACTCAAGGTTGAATTTTTCACGACCTATCAA--CTCATAA
ACTAGACAATTATCAATTACATTACCAGAAATAAAAACCCAATCATCTATACATTGTACGCAGTACACTTGCAACCATGA
AATGAATTATAC-AAAAAA--CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCACTTCA
AGTGGATGATTCTAA--------TGATGAGCGGCCGGTGAGACAACACGATTCCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGACGGCGAGATTAGGAGCGACGGCCGCATGCGTATTAGTGTTTTGCGAATCAAAAACTGTT
ACGTA--TATCAG-----AGAAAC-AGAAAAGACAACTCGGCTAAGCCTAATAAGTCAAACCATATAGCTGGACATCATG
CGTAACAGCGTTCATAAAGGGACGCACTTAGCAATGGCGTCCAGGATTGGACGCTGCTCTTAATAGCGTCCTTACTATTT
T-AACAATTTCCACTGACCATTTACCACTTCCGTAATTAGAGAATTCTTATTTATTATTAATAAAAAAATGGCTCA----
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----------------------
>chr7A_27
TTTCC---------------------------CATATGCTGAAAATGTGACTTCGGGAGGAACACTATACTCCACACCCA
TGGATCCATGTTGCACTTCACCATCCACATACGTTAGAACAATTAACATGTTCTCGAATTCACCTGCAGACATGAACATG
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTACTATTGACTCAAGGTTGAATTTTTCACGACCTATCAG--CTCATAA
ACTAGACAATTACCAATTATATTACCAGAAATAAAAACCCAATCATCTATACATTGTACGCAGTACACTTGCAACCATAG
AATGAATTATACAAAAAAA--CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCAGTTCA
AGTGGATGATCCTAA--------TGATGAGCGGCCGGTGAGACAACACGATTTCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGACGGCGAGATTAGGAGCGACGGCTGCATGCGTATTAGTGTTTTGTGGATCAAAAACTGTT
ACCTA--TATCAG-----AGAAAG-AGAAAAGACAACTCGGCTGAGCCTAATAAGTCAAACCATATAGCTGGACATCATG
CGTAACAGCGTCCATAAAGGGACGCACTTTGCAATGGCGTCCAGGATTGGACGCTGCTCTTAATAGCATCATTACTATTT
TTGACAATTTTCATTGACCATTTACCACTTCCGTAATTACAGAATTCTTATTTATTATTAATAAAAAAATCGG-------
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----------------------
>chr7A_27
TTTCC---------------------------CATATGCTGAAAATGTGACTTTGGGAGGAACACTATACTCCACACCCA
TGGATCCATGTTGAACTTCACCATCCACATACGTTAGAACAATTAACATGTTCTCGAATTCACCTACAGACATGAACATG
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTACTATTGACTCAAGGTTGAATTTTTCACGACCTATCAG--CTCATAA
ACTAGACAATTACCAATTATATTACCAGAAATAAAAACCCAATCATCTATACATTGTACGCAGTACACTTGCAACCATGG
AATGAATTATACAAAAAAA--CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCAGTTCA
AGTGGATGATCCTAA--------TGATGAGCGGCCGGTGAGACAACACGATTCCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGATGGCGAGATTAGGAGCGACGGCTGCATGCGTATTAGTGTTTTGCGGATCAAAAACTGTT
ACGTA--TATCAG-----AGAAAG-AGAAAAGACAACTCGGCTGAGCCTAACAAGTCAAACCATATAGCTGGACATCATG
CGTAACAGCGTCCATAAAGGGACGCACTTAGCAATGGCGTCTAGGATTGGACGCTGCTCTTAATAGCGTCCTTACTATTT
TTGACAATTTCCACTAACCATTTACCACTTCCGTAATTAGAGAATTCTTATTTATTATTAATAAAAAAATCGG-------
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----------------------
>chr3A_27
TTTCC---------------------------CATATGCTGAAAATATGACTTTGGGAGGAACACTATACTCCACACCCA
TGGATCCATGTTGCACTTCACCATCCACATACGTTAGAACAATTAACATGTTCTCGAATTCACCTGCAGACATGAACATG
TAGGAAGTAAAGATCAAAATCTTAAATTGATTTAATATTGACTCAAGGTTGAATTTTTCACAACCTATCAG--CTCATAA
ACTAGACAATTACCAATTATATTACCAGAAATAAAAACCCAATCATCTATACATTGTACGCAGTACACTTGCAACCATGG
AATGAATTATACAAAAAA---CTTGATAGAGAAGATGCAATACGGC----GTACAAGTCACATGCGCCAACTGCAGTTCA
AGTGGATGATCCTAA--------TGATGAGCGGCCGGTGAGACAACACGATTCCTTTGA----TGATTGCTGATGTTACC
CGCTGGAGCTTGCTTACGGGACGGCGAGATTAGGAGCGACGGCTGCATGCGTATTAGTGTTTTGGGGATCAAAAACTGTT
ACGTA--TATTAG-----AGAAAG-AGAAAAGACAACTCGGCTGAGCCTAATAAGTCAAACCATATAGCTGGAGATCATG
CGTAACAGCGTCCATAAAGGGACGCACTTAGCAATGGCGTCCAGGATTGGACGCTGCTCTTAATAGCGTCCTTACTATTT
TTGACAATTTCCATTGACCATTTACCACTTCCATAATTAGAGAATTCTTATTTATTATTAATAAAAAAATCGG-------
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----------------------
>chr1A_109
--------------------------------------------------------------------------------
----------------------------ATACATTAGAATAATTAGCATGCTCTCCAATTCACCTGCACGCATGAACATA
TAGGAAGTAAGCATCAAGACCTTGAATTGATTTACTATGAACTCAAGATTGATTTTT-CATGACCTATCAGTTTTCATAA
ACTAGCCAATTACCAATTATATTATCAGGAATAATAATCCAATCATCTATACAATGTATGCAGTACACTTGCAATCATTA
AATGAATTATACAGAAAA---CTTGATAGAGAAGATGCAGTATGGCCGTGGTACAATT-ACATGCGCCAACTACAGGTCA
AGTGGATGATCTTAA--------TGACGAGCGGCCGGTGAGACAACGCAGCTCCTATGA----TGATTTTTAATGTCGGC
CGCTGAAGCTTGCTTAGGAGACGGTGAGATCAGAAGCAACGACTGCATGCGTATTAGGTTTT-GTAGATCAGAAACATTT
ACGTATAT--CAG-----AG-AAA-AGAAAAGATGACTCGATTGAGCCTAATAAGTCGAACCACATAGCCGGAGGTCATG
CGTAACAACGTTCATAGAAGGACGCACTTAGCAATGGCGTCCAGACTTGAACGCTACTCTTCATAGCGTCCTTTCTATTT
T-AACAATTT----------------------------------------------------------------------
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>chr1A_771
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---------------------------------------------------------------------------CAGTT
GAGAAGGCAAAATCATAATGTTAGATAAGCGAGGGTAAAACTGCAATTGGAATTCATATTAGAAAACCA-----TA----
ATGCCTCTCCCAAACCATAA--TGGCAACGGCCAACAGTACAGCTGCAGCTGTTCACGCGGCTCAC-----------GCA
GCTCTGCTCTGACC--TATCTGGTCCATATATATGC----TTCTCTCGTTTGCTTGGCCGGCCACATTTCGTTCACGCAG
TCGAAGTAGCAAGCAGTAGGTTTTGTGCACTCCCCGGCCCGA--------AGTCTGCCCATGGCTCGGCTTTACCACCTC
ACGCTCCTCTCCGTCTTCTTCTTCCTGCTCCTCACCGGCCTCGTGGCTGCTGATCTGTCCGGA------------GGGAA
GAAGGTCGG------------GAAGAAGGTGACCATGACCGTGCGGTACCCGCCTGAAGACTTGGGGGAGAAGATCACGA
TCTCGA----------------------------CGCACCTCGTCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACGGCGACGACTACGAGCCGTATGTCTAG--------CTCTCT--------C--------------------------
------------TTTCTCCAACTCATCGTCACAAAGGA-----CACACTCCACCG-------------------------
--------AATAA-TTTTTTAGCTAAGCTCGCAATCGATCTG--------CAGCATCATTTTCGCCGTGAAAAACCTTGT
TTC---TGCCCTGGGGAAGGTAGGGGATCCGCAGGCCTCTCTATCCGAGGTAATGCACATTTT-GTCCCTCCCTTTCTCA
TCCATTGGTTCAGATTTCAGAAC---------------------GCAAATGTAAGC-------TACTGACCTTTGCCTAA
TTGTTTCTCAGATGTAGCTTCACGG------------------------------------TGC--------------AT
GCCCAGTCACTGCGCCACTGGACACTGGAGATGGAGCTCCTCTTTACTTTCGTCTCAGCGAGAATACATTAGGCGCC--T
TACTATTTTATTGTACTACCGTCTGCAAGCAGAAGTGCCC-------------ATCCGGTGGCCTATTATTTGGGCTATA
GTAATGTCGTAGTGTTTATGGTGCTGGAGTCTGTCTGCAGCTATCTCTGTGTATCTTGGATTCTATAATCTTCCGGGCTA
GGGAAAGAAAATATTTCGTCGTTCTTCAATTTATTTCTGCTCAATTTCCATCAAGTAGAGGATCACTATTGTGCTTTATT
AAGAAATTAAATAGAACATAACTGCACGAGTATAAA--------------------------------------------
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----------------------
>chr1B_771
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---------------------------------------------------------------------------CAATT
GAGAAGGCAAAATCATCATGTTAGATAAGCGAGG-TAAAATTGCAATTTGAATTCACGGTAGAACACCAGTTAGTA----
TTGCCTCTCCCTGACACTATGGTGGCAACGGCCAACAGTACATCTGCAGCT---------GTTCAC-----------GCA
GCTCTGCTCTTACC--TATCCGGTCC--ATATATGC----TTCTCTCCTTTGCTTGGCCGGCCACATTTCGTTCATGCAG
TTGAAGTGGCAAGCAGTAGGTTCCGTGCACTCCTCATCCCGA--------AGTCTG-CCATGGCTCGGCTCTGCCACCTC
ACCCT-CTCTCCGTCTTCTTCTTCCTGCTCCTCACCGGCCTCGTGGCTGCTGATCTGTCCGGAGGGAAGAAGGTTGGGAA
GAAGGTCGG------------GAAGAAGGTGACCATGACCGTGCGGTACCCGGCTGAAGACTCGGGGGAGAAGATCACGA
TCTCGG----------------------------CGCACCTCGTCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACAGCGACGACTACGAGCCGTACGTCTCTGAGTCTCTCTCTCC--------C--------------------------
------------TCTCTCCAACTCATCCTCACAAAGCAGAGCACACACTCGACCGAGCCGTGCGGT----------TTTG
CTTGGTTTTATAA-ATTTTTAGCTAAGCTTGCGATCGATCTG--------CAGCATCGTTTTCGCAGTGAAAAACCTTGT
CTC---GGCTCTGGAGAAGGTAGGAGATCCGCAGGCCTCTCTATCCAAGGTAACGCACATTTTTGCCCCTCCCTATCTCA
TCCATTGGTTCATATTTCAGAAC---------------------GCAAATGTAAGC-------TACTGACCTTTGCTTAA
TTGTTTCTCAGATGTAGCTTCACGG------------------------------------TGCTCAGTGCTGGTTGCAT
GCCCAGTTAG--------TGGACATTGGAAATGGAGCTCCTCTTTACTTTCGTCTCCGCGAGAATACATTAGGCGTC--T
TT-TACTTTTTT--------------------------------------------------------------------
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----------------------
>chr1B_771
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---------------------------------------------------------------------------CAATT
GAGAAGGCAAAATCATCATGTTAGATAAGCGAGG-TAAAATTGCAATTGGAATTCACGGTAGAACACCAGTTAGTATGAA
TTGCCTCCC-------------TGGCAACGGCCAACAGTACATCGGCAGCT---------GTTCACACGCGGCTCACGCA
GCTCTGCTCTAACCTATATCCGGTCC--ATATATGC----TTCTCTCGTTTGCTTGGCCAGCCACATTTCATTCACGCAG
TTGAAGTGGCAAGCAGTAGGTTCTGTGCACTCCTCATCCCAA--------AGTCTG-GCATGGCTCAGCTCTACCACCTC
ACCCTCCTCTCCGTCTTCTTCTTCCTGCTCCTCACCAGCCTCGTGGCTGCTGATCTGTCCGGA------------GGGAA
GAAGGTCGGCAAGAAGGTTGGGAAGAAGGTGACGATGACCGTGCGGTACCCGGCTGAAGACTCGGGGGAGAAGATCACGA
TCTCGTCGCAAAAAAAAAAAGATCACGATCTCGTCGCACCTCGTCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACAGCGACGACTACGAGCCGTATGTCTCTCTGTCTCTTTGTCT--------C--------------------------
------------TGTCTCCAACTCATCCTCACAAAGCA-----CACACTCCATGA-GTCTTGTGGT----------TTTG
CTTGGTTTAATAA-ATTTTTAGCTAAGCCTGCTGTCGATCTG--------CAGCATCGTTTT------------------
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----------------------
>chr1B_874
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---------------------------------------------------GTTCACACAGTTCAC-----------GCC
GCTCTGCTCTTACC--TATCCGGTCC--ATATATGC----TTCTCTCGTTCGCTTGGCCGGCCACAGTTAGTTCACGCAG
TTGAAGTT--------------------------------GA--------AGTGTG-CCATGGCTCGGCTCTACCACCTC
ACCCTCCTCTCCGTCTTCTTCTTCCTGCTCCTCACCGGCCTCGTGGCTGCCGATCCGTCTGGA------------GGGAA
GAAGGTCGG------------GAAGAAGGTGATCATGACGGTGCGGTACCCGGCTGCCGACTCGGGGGAGAAGATCACAA
TCTCGA----------------------------CGCACCTCATCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACGGCGACGACTACGAACCGTATGCCTCT--------TTCTCTCTCTTTCTC--------------------------
------------ACTCTCCAACTCATCGTCACAAAGCA-----CACACTCGAGCCAGCCGTGCACGTGTGGTTCAATTTG
CTTGATTTAATAA-ATTTCTGGCTAAGCTTGCGATCGATCTTCATTTCTTCAGCATCATTTTCGCCACGAAAAACCTTGT
CTC---GGCCCTGGAGAAGGTTGGAGATCCGCAGGCCTCTCTATCCGAGGTAACGCACATTTT-GCGCCTCCCTATCTCA
TCCCTTGTTTCAGAGTTCAGAAC---------------------GCAATTGTAAGCAACTGAGTACTGACCTATGCCTAA
TTGTTTCTCAGCTGTAG---------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_876
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-----------------------------------------------------TCACGCAGCTCAC-----------GCG
GCTCTGCTCTTACC--TATCCGGTCC--ATATATGC----TTCTCTCGTTCGCTTGGCCGGCCACAGTTAGTTCACGCAG
TTGAAGTTGCAAGAAGCAGCTTGTGTGCATTCCTCTG------------TAGTGTG-CCATGGCTCGGCTCTACCAGCTC
ACCGTCCTCTCCGTCTTCTTCTTCCTGCTCCTCACCGGCCTCGTGGCTGCCGATCCGTCTGGA------------GGGAA
GAAGGTCGG------------GAAGAAGGTGATCATGACGGTGCGGTATCCGGCTGCCGACTCGGGGGAGAAGGTCACGA
TCTCGA----------------------------CGCACCTCATCGGCGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACGGCGACGACTACGAACCGTATGCCTCT--------TTCTCT--------C--------------------------
------------ACTCTCCAACTCATCGTCACAAAGCA-----CACACTCGAGCCAGC------CGTGTGGTTTAGTTTG
CTTGATTTCATAT-ATTTCTGGCTAAGCTTGCGATCGATCTTCACTTCTTCAGCATCATTTTCGCCACGAAAAACCTTGT
GTC---GGCCCTGGAGAAGGTAGGAGATCCGCAGGCCTCTCTATCCGAGGTAACGAACATTTT-GCCCCTCCCTATCTCA
TCCGTTGTTTCAGATTTCAGAACGCAAATGTAAGCTTTCAGAACGCAAATGTAAGC-------TACTGACCTTTGCCTAA
TTGTTTCTCAGCTGTAGAAGCACGTACGTGACGTGAGTGAGCTTTCACGGGGCTCACTGCATGCTCAGTGGTGGTTGCAT
GCCCAGTCAG--------TGGAGATTGGTGATGGAGCTCTTCTTTTCTTTCGTCTCTGAGATAATACATTAGGCACT--T
TT-TATTTTGTTGT------------------------------------------------------------------
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>chr1A_876
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-----------------------------------------------------TCACGCAGCTCAC-----------GCG
CATCTGCTCTTACC--TATCCGGTCC--ATATATGCATGCTTGTCTCGTCCGCTTGGCCGGCCACAGTTAGTTCACGCAG
TTGAAGTAGC----------TTGTGTGCATTCCTCAGTCCGTCCGTCTCTAGTGTG-CCATGGCTCGGCTCTACCACCTC
ACCTTCCTCTCCGTCTTCTTCTACCTCCTCCTCACCGGCCTCGTGGCTGCCGATCCGTCTGGA------------GGGAA
GAAGGTCGG------------CAAGAAGGTGATCATGACGGTGCGGTACCCGGCTGCCGACTCGGGGGAGAAGATCACGA
TCTCGA----------------------------CGCGCCTCATCGGTGAGGGCGGGGTCGGCGACAGCCACTTCCATCT
CGACGGCGACGACTACGAACCGTATGCCTCT--------CTCTCT--------CTCTCGCTCTCTCTTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCAACTCATCGTCACAAAGCA-----CACACTCGAGCCAGC------CGTGTGATTTAATTTG
CTTGATTTAATAA-ATTTCTGGCTAAGCTTGCGATCGATCTTCACTTGTTCAGCATCATTTTCGCCACGAAAAACCTTGT
CTC---GGCC-TGGAGAAGGTGGGAGATCCGCAGGCCAATCTATCCGAGGTAACGCACATTTT-GCCCCTCCCTATCTCA
TCCGTTGGTTCAGATTTCAGATC---------------------GCAAATGTAAGC-------TACTGACCTTTGCCTAA
TTGTTTCTCAGCTGTAGAAGCACGTACTTGACGTGAGTGAGCTTTCACGGGGCTCACTGCATGCTCAGTGGTGGTTGCAT
GCCCAGTCAG--------TGGAGATTGGCAATGGAGCTCCTCTTTTCTTTCCTCTCAGCGAGAATACATTAGGCGCT--T
TT-TATTTTGTTGTAGT---------------------------------------------------------------
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----------------------
>SNPs
-S-------------------------------S----------------------------------------------
-S----------S--------------S----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
----------------------------------------------------------------S---------------
-------------------------------------S---------------S--------------------------
-----------------------S-S------------------------------------------------------
--S------------------------------S-------------------------S--------------------
-------------------------------------------------------------------------------S
---------------S------------------------------S---------------------------------
----------------------------------------------------------SSSSSS--S-S-SS--------
--------------------------------------------------------------------------------
------------------S--------------------------------S----------------------------
-------------S--------------------------------------------------S---------------
----------SS------S-----------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------SS--------S------S--S------------------------
-------------S-----------------------------------------------------------S------
---SSS--------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------S----------------------------S-------SS--SS-
----------S------------------S--S-S-----SSSSSSSSSSSSS----SS---S--------S--SSS---
-S-----S-S-S---SS---------------SS--S-------S--------------S----S-------S----S-S
-S-S--S------S-----S-----------------------S------------S-------S--------S------
--S-S----------S-----S-----S----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_504
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----GGAGCTTGCTTACGAGACGT--------------------------------------------------------
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----------------------
>reverse_2444
--------------------------------------------------------------------------------
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-------------------------------------------ATCTAATCCACCGGGGGTCA-----------------
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----------------------
