>input_sequence_77392
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------------------------------------GGGGTAGCAAAGCACGCAAGAATCGTCGCCAGGGAGGAGGAAGA
CAAGGAGGAGAGCCATGGCGAGCGTGG---TCGAGACCCACGACTCCGCGGTGGCCGGCGGCGGGGACGTGGTGTTCTGC
GTCATCATCTTGTTCATGTCCGTGCTGTCCCTGGTCATCTTGGCGACCTCCTCTGCCGTCGGCAGCGGCGACGGGGAAGA
GGAAGGGAGGCAGCGGCAGCGCTCCGGCTCCCGCGGGAACGGGCCGGTGTTCGTGGGCGGCAGGGGCTGCGCCTGCGGCG
GCTGCCGCGCCGGCGCCGGCGTCTGCGGCACCTACCTCTCGTGATCACCGCCGACCGTGCACGCGCCCCGCGCGCGCTCC
GCATGTACAT---GCGTGGACGCACTTACCGCATAAC-TAAGGAGGAGCATCGATCGGAGCTCTCGCCAGGCTTGCGCAA
GGCTACTCAGTTCTTCTTTTTCCTCTGCTTGTGTATA-------------------------------------------
-TTACTACTAATAGCTGCACATCATGTGATGTGAATAAACTGCAAGAACATGG---------------------------
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>chr6D_1_TraesCS6D01G151500
TGTTTTTATTAGAAATGTGTAACCATTTATTTTAGAAGAGTGACATATGTTACTAAAAATGTGTAATTGAAATAGATGTA
ATTTTTGTGAAACAAACAAGTGAAATGTGAAATGTAGGTTCTGAAACTGAACAAAAATATGAAACTAAAATGTCAATTTG
TGAAACTAATTGAAATCACGTT--TGAAAAGATTTCAAGCGAGTGAAATTACAGATTATGGATTTTCACAAATGTGAAAT
TGTAACTACAAAAAAGTGAAATTATAATGTATTATTGTGAAACTGGTTTTTTTAAATGTGAAATGCACATTCGTATTTAA
ACGTGGTTGAAAAATATTCAAGATTGATGTTATTTTAAA-GGTTTCGACGCAAGGAGTTCAAATATAAATTAAAAATTAA
AAATGAAAATATGGTTTAAAAGATACGAATGTTATAAATTAGTCAAGGTCAAAAAGAT-GTTGGATTT--ATTGTGTACG
AGAAGAGATAGAGTTGTTCTGC-GCATTAATGTCATCCTACATGTGAAGTAGAATGGGTCC---GCTGCTGAAATACCAA
TATTTTCTTAAATTAAAGAAAAGACAATATATGGTGCTAGGTGGCATTAGCCGATTGGGTAAGACGTTGCCGGTGGGTA-
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-----------------------------------GCATCACCGCTCAATTTTTTGCTTTGCCCCTGGTTTTCTTTCTGT
TTACGAAAAACAGATATTCCAACTGATCCACAAACAAATGCGAGACAAGTTTGGATGACTTGCGTCGTCC----------
--------------------GGTGCGTTGGAGGTACCTTTAGTGCTCCAAGAAAAGTATTGTCATTAGGGAACAAATCAG
GCGACGTCGTCAATCATCCGACGAGAGGCCGGAGTCCCATATGCCATTATTGCAGCTGCAGAGGTCGCAATTCCTCTCCA
TTTAGAATTTTAGATAAGCATCGCTCCGCCTCTTCGCCTACGTATAAGCGAAGCTCCTGTTTATTTCACATACCCGGCTC
GATCTCGCCACGACCGTGTGCGCGCTCCAGCCTCCAGGGGTAGCAAAGCACGCAAGAATCGTCGCCAGGGAGGAGGAAGA
CAAGGAGGAGAGCCATGGCGAGCGTGG---TCGAGACCCACGACTCCGCGGTGGCCGGCGGCGGGGACGTGGTGTTCTGC
GTCATCATCTTGTTCATGTCCGTGCTGTCCCTGGTCATCTTGGCGACCTCCTCTGCCGTCGGCAGCGGCGACGGGGAAGA
GGAAGGGAGGCAGCGGCAGCGCTCCGGCTCCCGCGGGAACGGGCCGGTGTTCGTGGGCGGCAGGGGCTGCGCCTGCGGCG
GCTGCCGCGCCGGCGCCGGCGTCTGCGGCACCTACCTCTCGTGATCACCGCCGACCGTGCACGCGCCCCGCGCGCGCTCC
GCATGTACAT---GCGTGGACGCACTTACCGCATAAC-TAAGGAGGAGCATCGATCGGAGCTCTCGCCAGGCTTGCGCAA
GGCTACTCAGTTCTTCTTTTTCCTCTGCTTGTGTATA-------------------------------------------
-TTACTACTAATAGCTGCACATCATGTGATGTGAATAAACTGCAAGAACATGGAGTGTTTTATCTGTTCCCTGAATAATC
ATCGATCCATGTGCGATT-GTTGCTTCTTCTT--CTACTTTAGCTGCTAGTTTCCGGATTTGGGTTCGGTTTCG------
--ATGGAACAGTAGTGGCTGACGCCCATATGCTCCTACCGTTCTATATCTATTATATCTTTTGTTGGGCAGTTGTTGGAG
AGACATCTTGCCGGTAAACGAG---TACAGTGTTTGGACCAGAAGACGAAAGT--------------------CCGCCGA
AGAGGGTGAGACAAGGGTGCCCCATCGACCAACTACCTCAATCAATCGATACAAAAGTCCAT------------------
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-----------------GAATTCGGCACCTAAACCATCAACTATTCGGTGCTGCATGTGAAGAAAAGAAAACAAACGTTC
GGTC------------------------GTTGCAACCTTACACGGGTGCCCTTCTTTGCACGGTGTTGAGAATCGTATCC
TG--ATAGATCATGAAGCC--TTTTTAAGACTTTGAGATAGGTCTACGTAACAGCCCCAAAAAAATCTAAATTGGTTTTG
AGCAAATTCCTTCCAGAATCCGTAGAACCAAAAGTTCTCTCTTCCTTTCTCCGTGTCAGCTCATCACGACAGTGGATCCC
CCAACTTAGAGCATCTCCAATAGAAGATGCAAATTTGAAAATATAAAACGGAAGATTTTAAAAATTACATCTCTAAAAAG
GGCTTTTTGCATCTCAAAAAAGTGCCAACTCCAACATAC-----------------------------------------
----------------------------------------------------------------GATGTAAAACGAAGAT
GCAAAAGAGCAACTTCAATAGAAGATGCAAATTAGAGA-------------TGTAAACCGGCCGCTGGCCGCGCGGCTGC
TGGCCGCGCGGCTGCTGTTCTGCTTTCAGTTTAGCCGCTATACAGCCCCATTTGCACATTGAATATTCATAATTCTACCA
ACAAAGTGCATCATGAAGCAAAGTTTTAAATCCTACAAACAAAAGTCAATTGTCTCAAACGAAGTTTTTGGTAAAAAAAA
TGAAAATACACATAGACATCACTCAATTTGTGTCCTCTCTGTTGTCACTAGTGCCATTGTCGATGATG
>chr6B_1
TGATTTT-TTAGAAATGTGTAACAATTTATTCCAAAAGAGGGACATACGTTATTAAAAAAATGTAATTGAAACAGATGTA
ATTTTGGTGAAACAACC-AGTGAAAAGTGAAATGTAGATTCCAAAACTAGACAAAAATATTAAATTG-AATTTCAACTTG
TGAAACTAATTAAAATCATGTTATTGAAAAGATTTCAAGCGAGTGAAATTACAGATTATGGATTTTCACTAACGTGAAAT
AGTAACTACAGAAAAGTGGAATTATAATGTATCACTGTGAAATTGATTTTTGCAAATGTGAAATGTACATTCGTATTAAA
ACGTGGTTGAAAAATATCCATGATTCATCTTA-TTTAAA-GGTTTTGACTCAAGGGGTTGAAATATAAATATAAATTCAA
AAATGAATATATGGTTTAAAATATATGAATGTTTGAAATTAGTCAAGGTCAAATAAAAAGTTGGATTT--ATTGTGTAGA
AGAAGAGATGGAGTGGTTCTGCTGCATTAATATCACCCTGCATGTGAAGTACAATGGGTCTGCTGCTGCTGGAATAACAA
TATTTTCTTAAATTG-----AAGACAAGATATGGTGCTAGGTGGCATTAGCCGATTGGATAAGGCCTTGCTGGTGGGTAG
CATCGGGAAAGTATTTGGTACTCCCATCCTTGGGTACTCCCCGTGCTCCAAAATTAAAAAAAAACAATTTTTAAATGTTT
CAAAAAATTCTGGAAAAAATGTGAATGTTTACAACGAATGTGACTACAACTCCTAAAATTTCAGGTCCAAACTGAAAATG
CATATTAAGAAATAAAAATGTGAAATCTAGCATGAATAGTGTAAAAAAAAGACAAAAACAACATTGACACTATTTACATC
CGGATTTCACTTTTTTGTTTCTCAATGTGCATTTCGAGTTTGAACCTAAATTTTTTAGGGGTTATAGTCACATTTTTTAT
GAACATTCACATTTTTCGGGATTTTTTTGAAACATTTAAGAATGTTTTTTAAAATTTGGAGCACCAGGAGTATCCAAAGG
ATGGGAGTACATGATGGCTGATAGTTTCCCAGGCTGCATCACCGCTCAATTTTTCTCTTTGCCCTGGTTTTCAG------
--------AACAGACGTTGGGACTGATCCACAAACAAATGCAGGACACAGTTGTCCTCCGGACGGCTGTCCGCGGTTTGG
ACAGAAGCGGAAAGTTTGAGGGTGCGTTGCAGATACCTTTAGTGCTC-AAGAAAAGTATTGTTATTAGGGAACAAATCAG
GCGACGTCGTC-ATCATCCAACGAGAGGGCGGAGTCCCATATGCCATTATTGCAGCTGCGGAGGTCGCAATTCCTCTCTC
TTG---------GATAAGCATCGCTCCGCCTCTTCGCCTTCGTATAAGCGAAACTCCTGTCCGTTTCACATATCCCGCT-
---CCCGCCACGACCGTGCGCGCGCTCCAGCCTCCAGGGGTAGCCAAGCTCGCAAGAATCGTCGCCAGCGAGGAGGAAGA
CGAGGAGGAGCGCCATGGCGAGCGTGGTCATCGAGAGCCACGACTCCGCGGTGGCCGGCGGCGGGGACGTGGTGTTCTGC
GTCATCATCCTGTGCATGTCCGTGCTGTCCTTGGTCATCTTGGCGGCCTCCTCTGCCGTCGGCAGCGGCGACGGGGAAGA
GGAAGGGAGGCTGCGGCGGCGCTCCGCCTCACGCGGGAACGGGCCGGTGTTCGTGGGCGGCAGGGGCTGCGCCTGCGGCG
GCTGCCGCGCCGGCGCCGGCGTCTGCGGCACCTACCTCTCGTGATCACCGCCGACCGTGCACGCGCCGCGCGCGCACTCC
ACATGTACATACAGCGTGGACGCACTCACCGCATAACGTAAGGAGGAGCATCGATCGGAGCTCTCGCCAGGCTTGCGCAT
GGCTACTCCGTTCTTCCTTTTCCTCTGTTTGTACTCCCTAAAGTAGTATAAGACGTTTTAGATCACTAAAAGGCATATTA
CTTACTACTGATAGATGCACATCCTGTGATGTGAATAAGCTGCAAGAGCATGGAGTGTTTTATCTGTTCCTTGAATAATC
ATCGATCCATGTGCGATCGGTTGCTTCTTCTATACTACTTTAGCTGATAGTTTCTGGATTTGGGTTCGGTTTCGATGGAA
GTATGGAACAGTAGTGGCTGACGCCCATATGCTCCTACCGTTCTATATCTATGA--TCGTTTGTTGGGCAGTTGTTGGAG
AGACATCTTGCTGGTAAACGAGTACTACAGTGTTTGGACCAGAAGGCGAAAGGGGAGAAGTGGGGA-GCAGAACCGCCGA
AGATGGCGAGACAACGACGCCCCGTCGACCAACTACCCCAATCAACCGATACAAAAGTCCACACGTTTTTTTTTCCCGAG
GGTACGCGACCTCAGCTTTATAGGAAGAGAGAAATAAGACATACAACAACGTCTACCACTCGCTGCGAACAATGAAGGCG
ACCAACTCCACACAGGTTCGTACAAGGACAACCAAACACAACAACACAGCTACGGCACAAAAAGCCTACCCCAACACCGA
GCCCCTCGCCGCGTCTCGGCCAACACTGAAGACCTCCGAAGAACAGCAACTCCAGCTTCCTTGGAATAGCCAGCGATGAC
CATACATGACGCCGGAGGAGAAAGATCCGGGCAGCGGTGAACATCGGAGGAGCGCATCATGGGACCTCGAGTCTCCCAGC
ACAATGCTCCCAACAGAGTAACAACCACAAAGACGTTGCCATCATGCCGATCCGACGAATCAAGGCTTTCGCCCCGGAGA
CAGCTGCCGATACGAGGTCGCGGGGAAGATGGCGTTGCACTCGGCGAAGCCTCCGGAAAGGTGAGTGACACCCGCAGGTG
CCATCAACGCCAGTCCGGCCACAACCGAACAGGATTTTCATCCATAGCGCTGCACATCTCCACGTCTCCAAGATCCCGGC
CAGTCCCGATCAGATGCCTCGCACCGTCGTCACCGCAACAACTTGTCATCGAAGCCCCCCTCACTGCCGAGGGAACACAC
CTAAAGCCATCACGTTCAACATCGACTAGGAGCCGCAGCAACCACCGAGCGGTGCAAAGCCAGTTCCGCCATGGTGGCCT
TCACCCGCGCCAGGGGACTGCCACCAGAACGGATCCGACTCGCACCTACGACCACACTCCGTCACCCACACCGCCGAGGC
ATCGCCTCACGCCTCACACGGCAGCAACCGAACGCCCGCTGCCCGCCAAGACCGTTCCTGGCAAGGCATCGCGGTGCCGC
CGTCGCCATGGCTGCGCTCGCACCGCCGCCACCGCCAGTGCCGGTGCACCACCTACACCCTCCATCCTGCTACACTCCAC
GCAAGGATCCAGAGACAACTGCCGCACTCCCTGTTGTGAGCACCCCAAGGACGTCGGCTATCGCCGAAGACACACCAGAT
CCGGGTCGAGATCCCCAGATCGGCGCTCCGGGCGCCGCCAACCAGCACCACCGACCCGCCGCTAGCCTCCACCGCCGGGA
GCGAGTCACCGCGGCGCCACCAGCCCCTGCTCTACCAGCTCCCGGAGGATAGAGCCTCGCCGCCGTCCAGCCTGGAGAGC
GCCGCCCCGAGCCGCCTACCGACCAGCGACTGCCGCCAGCCGTGGGGCGCCAGATCTGACCGCAGCCCGCCGGCCCGCGC
CAGGCCACGCATCCCCCGAGCAGCGCCCAGCACCAACACCTCCGAGCGCCGCCGGCCGTGGGCTCCAGATCCGGCCGGAC
CACGCCAGGCCGCGCCATCCCAAAGCAGCGCCCCGCTCCATCCAGCGCCGCCGGGCCACGCCGACACTGGCCTGACGCGC
GCCGCTGCCGAGTCGCCTGGCACCAAGAGGAAGGGCCCCCCGCGCCGCCTGCGTGCCTCGAGGAAAGGGGGGACCACGCC
GCCGCCGACGCGCGCACGGGCTTTGCCCGGCGGCGTCCGCTGGCGGCGGCGAGGGAGGAGAGGGGGTGGGGGGTGGCAGC
GGCGGTGATTAGGGTTTCGTCCGGGCCGCTCGCGGTAGCGGCGCGGGGACTGGCTGTGTCCTATTTTTACGTCTTCAAAT
ATGCAACCTTCCAGGAGGAATTCGGCACCTAAACCATCAACTATTCGGTGCTGCATGTGAAGAAAAGAAAACAAACGTTC
GGTCATTGCAACCTTTTATTTTTCGGTCGTTGCAACCTTACACGGGTACCCTTCTTTGCACGGTGTTGAGAATCGTATCC
TG--GTAGATTATGAAGCCA-TTTTTAAGACTTTGAGATAGGTCTACATAACAGCCCCAAC-AATTTAAAATTAGTTTTG
AGCAAATTCCTTCCAGAATCCGTAGAACCAAAAGTTCTCTCTCCCTTTCTCCGTGTCAGCTCATCACCACAGTGGATCCT
CCGACTTAGAGCATCTCCAATACAAGATGCAAATTTAAAGATGTAAAACAGAAGATTTAAAAATTTACATCTTTAAAAAA
TGTTTTTTGCATCTTAAAAAAGTGCCAACTCTAATACTCCCTCCGTTCGGAATTACTTGTCACAAAAATGAATGTATTTA
CAACTAAAATACATCTAGATACATTCATTTCTTGAACGAGTAATTCTGAACGGAGGGAATAGATGATGCAAAACGGAGAT
GCAAAAGAGCAACATCAATAAA-------------AGA-------------TGTAAACCGGCCGCTGGCCACGCGGCTGT
TGTTCGGCCA----------------CAGTTTAGCCGTTGTACAGCCGCATTTGCACATTGAATTTTCATAATTCTACCA
ACAAAGTGCATCATGAACCAAAATTTTAGACCCTACGAGTAAAAGTCAATTGTCTGAAACGAAGTTCTTGGTCCAACAAA
TGGAAATACACATAGACATCATTCAATTTGCGTCCTCTCCGTTGTCACTAGTGCCATTGTC-------
>chr6A_13
------------AAATGTGTAACAATTTATTTTAAAAGAGTGACAAATGTTATT---AAAATGTGTAAGAAATAGATGTG
TTTTTTGTAAAACAAACAAATGAAAAGTGAAATGTAGATTCTGAAACTGAACAAAAATATGAAACTAAAATGTCAACTTG
TGAAACTAATTCAAATCATGTTATTGAACAGATTTCAATCGAGTGAAATTACAGATCATGGATTTTCACAAATGTGAAAT
AGTAACTACAGAAAAGTTGAATTATAATGTATC--TGTGAAACTAA-TTTTGTGAATGTGAAATGTGTATTCATATTTAA
ATGTGGTTGAAAAATATCCAAGATTGATCTTA-TTTTAAAGGTTTTGATACAGTGAGTTCAAATATAAATAAAAATTCTA
AAACAAATATATGGTTTAAAAGATATAAATGTTTTAAATTAGTCAAGGTCAAAAAGAT-GTTTGATTTATATTGTGTAGG
AGAAGAGATATAGTAGTTC-------------------------------------------------------------
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--------------------------GGCCGGAGTCCCATATGCCATTATTGCAGCTGCAGAGGTCGCAATTCCTCTCCA
TTTAGAATTTTAGATAAGCATCGCTCCGCCTCTTCGCCTACGTATAAGCGAAGCTCCTGTTCATTTCACATACCCCGCT-
---CTCGCCACGACCGTGTGCGCGCTCCAGCCTCCAGGGGTAGCAAAGCACGCAAGAATCGTCGCCAGGGAGGAGGAAGA
CGAGGAGGACCGCCATGGCTAGCGTGGTCATCGAGACCCACGACGCCGCGGTGGTCGGCGGCGCGGACGTGGTGTTCTGC
GTCATCATCCTGTGCATGTCGGTGCTGTCCCTGGTCATCTTGGCGGCCTCCTCTGCCGTCGGCAGCGGCGACGGGGAAGG
GGAAGGGAAGCGGCGGCGGCGCTCCGGCTCCCGCGGGAACGGGCCGGTGTTCGTGGGCGGCAGGGGCTGCGCCTGCGGCG
GCTGCCGCGCCGGCGCCGGCGTCTGCGGTACTTACCTCTCGTGATCACCGCCGACCGTGCAGGCGCCGAGCG--CGCTCC
ACATGTACATACAGCATGGACGCACTTACAGCA----GTAAGGAGGAGCATCGATCGGGGCTCTCGCCAGGCCTGCGCAT
GGCTACT-CGTTCTTCTTTCTTCTCTGTCTGTGCATA-------------------------------------------
-TTACTACTGATAGCTGCACATCATGTGATGTGAATAATCTGCAAGAACATGGAGTGTTTTATCTGTTCCTTGAATAATC
ATCGATCCATGTGCGATCCGATGCTTCTTCTA--CTACTTTAGCTGATAATTTCTGGATTTGGGTTCGGTTTCG------
--ATGGAACAGTAGT-GCTGACGCCCATATGCTCCTACCGTTCTAG--CTATGC--TCGTTTGTTGGGCACTTGTTGGAG
AGACATCTTGCCGGTAAACGAG---TACAGTGTTTGGACCAGAAGACGAAATGGGGAAACTGGGGGCGCAGAACCGCCGA
AGAGGGCGAGACAACGACGCCCAGGCGACCAACTACCCCAATCAATCGATACAAAAGTCC--------------------
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---------------AGGAATTCGGCACCTAAACCACCAACTATTCGGTGCTGCACGTGAAGAAAAGAAAACAAACGTTC
GGTCGTTGCAACCTT------------------------ACACGGGTGCCCTTCTTTGCACGGTGTTGAGAATTATATCC
TCTCATACATTATGAAGCCTTTTTTTAAGACTTT--GAGAGGTTTATGTAATAGCCCCAAAAAA----------------
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>chr6D_1966
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-----------------------------ACTTTGAGATAGGTCTACGTAACAGCCCCAAAAAATTAAAAATTAGTTTTG
AGCAAATTCCTTCCAGAATCCGTAGAACCAAAAGTTCTCTCTCCGTTTCTCCGTGCCAGCTCATCACCACAGTGCATCCT
CCGACTTAGAGCATCTCCAATAGAAGATGCAAATTTGAAGATGTAAAAC-GAAGATTTAAAAAATTACATCTTCAAAAAG
GGCCTTTTGCATCTAAAAAAAGTGCCAACTCCAACATAC-----------------------------------------
----------------------------------------------------------------GATTTAAAACGAAGAT
GCAAAAGAGCAACTCCAATAGA-------------AGATGCAAACTAGAGGTGTAAATCGGCCGCTGGCCGCGCGGCTGC
TGTTCGGCCG----------------CAGTTTAGCCGCTATACAGCCCCATTTGCACATTGAATTTTCATAATTCTACCA
ACAAAGTGCATCATGAAGCAAAGTTTTAAATCCTACAAACAAAAGTCAATTGTCTCAAACGAAGTTTTTGGTCCAAAAAA
TGAAAATACACATAGACATCACTCAATTTGCGTCCTCTCTATTGTCACTAGTGCCATTGTCGA-----
>SNPs
--S----S---------------S----------S-----------------S------SS-------------------
-------------------------S-----------S--------------------------------------S---
-----------S------S-------------------------------------------------------------
S---------S-------S-------------S-S----------S-----S-------------S--------------
-----------------S----------S---S------------S---S--------------------S----S-S--
-------S-----------------S-------S--------------------------------------------S-
--------------S----------------S---S---S-----------S--------S----------S----S---
--------------SSSSSS-------S------------------------------S----S-S----S---------
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------------------------------------------------------SS--------SS-S---SSSSSSSSS
SSSSSSSS------SS--SSS--------------------SS----SSS---SSSSS-SSS--S-SSS-----------
-----------------------------S--S--------------S--------------S-----------------
-----------S-------S------------------------------------------------------------
-------------------------------------------------------------S-------------S---S
SSS-----------------------------------------------------------------------------
-S--------S---------------------------------------------------------------------
---------S---S-------------------------------S----------------------------------
-----------S-----S--------------------------------------------------------------
-------------------------------------------------------------------S------------
S------------------------------------------------------------------------------S
--------S------------------S-----S----------------------------------------------
---------S----------------------------S-------------------------------S---------
-----------------S-------------S--------------S-------S-------------------------
----------------------------------------------------S-SS--S---------------------
----------------------------------------------------S---------------------------
------S-------S-SS-----S-------------S-----------------------S------------------
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----------S-----------------------------------------------------S-SS-----S------
------------------------------------------S------------------------S-----------S
--S------------------------------------S--S------S--------S-------------S-------
--------------S-----------------------------------------------------------------
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----------------------SSSSSSSSSSSSS---------------------------------------------
--SS--SS--SSSSSSSSSSSSSSSS--------------------------------------S---------------
------------------------------------------------------------------------SS------
------------------------------S--------------------------------SSSSS
>forward_557
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---------------------------------------------------------TGGGTCCGCTGCTGAAATAC---
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>reverse_4673
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--------------------------------TAGAGATGTAAACCGGCCGC----------------------------
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