>input_sequence_77386
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGAACTATATTAGTTTGCAAGTGTTGAGAACTGCAACAT
CCAATTTTTCTGTAAACAATAAACTGGGGGAGGGAGGATACAGAGAGGTTTTTAAGGTATGTATTATATGTTGTTATGAA
TATTACATGAGAATACAAATCCATACTACACCCTCTATTCCTAAATGGCTAAACATAAGATGCTTTGACAGTTCAATTTG
AACTGCCTAAACGTCTTACATTTAAAAATAGAGATAGTAGTAATAATTTGGTGAATTATGTAATTTAATCCAAGAGCAAA
CTTGCT-------TCTGCACAGGGTGAATTGCAGGACGAAAAGGAAATAGTCGTCGAAAGGCTGTCAGCAAACTCTGCTC
AAGGGTTCAATGAGCTGAAAAATGATCTAGTGTTAACCAACAAACTTAAGCACAAGAATCTGGTGCAGCTTCTCTGTGTT
TGCTTGCAAGAGAAACTGCTGGTGTACGAATATATGCCTAATGGAAGCCTAGACACGACCCTTATCGGTAAT------TC
TCCCAGCTCATCTTATTAA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr3A_1_TraesCS3A01G320400
AGATGTGTTGGTAACTTGGAATTATACTGAGTAAATCGCAACCATCAGAATGGAACTCGGTATTGCTGAACCTGTCGAAT
AATGCAGCAAATCCATTTCAGTTCATAAACTTCGTTTTGAAGAGCAACATCATGATGCACCAAAAGGATTTTGAAAACCC
AGGGTACTGTTTCCACTATACCTTTCAACATGGATAGGTTGAAACTTTAATAAGTATACTCACATGGATATGCTTGTTTT
GTGCAATGTTTTTAGGTTTTCTGGACAGTTTGAAATTTTGATTAAAATTGAGTTGCAATCTACCAGAGTTTGTAGAAATT
TTGACAGTGTTTTCCTAACGCATTAATAATTGACAGAAATAATCGACAACAATTAAACAGTTGCATCATTTCATCATACC
TTGTCGCACACCTTCCGCGCGCCTAGCAGGCCAGGCCTTAGAGAAATAGGAGATGGTTTTTTGGTTGTGGCCTAGCGGAG
GGTTGCCCCAAGTACTGTGTGAACCTATCTGAGGGGTCACACATGCACGTAGCCAACAAAAACTTTATATCTAGCATGCC
TGGTTAAACGTCAAACAATCTTTCAATTGCACAACAAATGATTCATGGGGCGCAACCTTGCGTGGATGCCCATGCTGCCA
TTTCTTGCCATCATGACGGCACCTGGTGCATCACAGTTTTGAGATGTTATTGATTGATTAATTTGCTTGTGTGATGACCG
ATACAGCGATATCGATGGTGATAAATCATTTCAAAACATGCAGGGAGGAGGAGGAGATTACAACATGTCATCCTTGTTGT
CGCCATTTCTCTTGGAACACTATTTGTGCTAGTGTTCGTGCTTGCTTGTGTTTGCCGACATAGGAGAGGGATCAAGGAGG
TGAACAAGGAAGAACAAGGTATATTATATTTCCTACAGAGCACAGGGATCCAGGGGAACAAGAGGAGGCGATGCTTACTC
GAATCACGTGTTTCTTATTGCAGACAATGCAGGGGAGGGCATGAACTATATTAGTTTGCAAGTGTTGAGAACTGCAACAT
CCAATTTTTCTGTAAACAATAAACTGGGGGAGGGAGGATACAGAGAGGTTTTTAAGGTATGTATTATATGTTGTTATGAA
TATTACATGAGAATACAAATCCATACTACACCCTCTATTCCTAAATGGCTAAACATAAGATGCTTTGACAGTTCAATTTG
AACTGCCTAAACGTCTTACATTTAAAAATAGAGATAGTAGTAATAATTTGGTGAATTATGTAATTTAATCCAAGAGCAAA
CTTGCT-------TCTGCACAGGGTGAATTGCAGGACGAAAAGGAAATAGTCGTCGAAAGGCTGTCAGCAAACTCTGCTC
AAGGGTTCAATGAGCTGAAAAATGATCTAGTGTTAACCAACAAACTTAAGCACAAGAATCTGGTGCAGCTTCTCTGTGTT
TGCTTGCAAGAGAAACTGCTGGTGTACGAATATATGCCTAATGGAAGCCTAGACACGACCCTTATCGGTAAT------TC
TCCCAGCTCATCTTATTAAAACTTTGG-------CACA------------CTACTATGGGTATATTCTTCTGTTGTTTCT
AGTTCCAGTGGCGCATGTGTGTA-------GCAGATCCTGAGAAGGCAAACCAACTGGACTGGACGAAAAGAAAAGGCAT
CATCTCCGGGATTGATCGAGGTCTATTGTATCTCCATGAGGACTCTCGGCTTAAAGTCATACACCGTGACCTGAAGCCAA
GCAACGTCTTACTCAACGTGGATATGAACCCCAAGATCTCAGACTTTGGTCTGTCTATGTTAGGGACCCTTTCCATTGTG
CGGCCCAACGACAGATGAAGGCCCAGCCCACCATGCTTCACTACATATTGATACGTCTCCAACGTATCTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTGTTTTGAATGTCTAATGGGCTTTATTATACACTTTTATATTATTTTTGGGACTAAC
CTACTAACCCA--AGGCCCAGTGCAAATTTC--TGT-TTTTT-ACCTATTTCAGTGTTCCGCAGAAAAAGGAATATCAAA
TTGAATCCAAACCGAATAAAACCTTCGGGAGAGTTATTTTTGAAACAAACGTGATCCAGGGGACTTGGATTAGACGTCAA
GAAAGGAGCGAGGAGGCCACGAGGCAGGGAGGCGCGCCTGCCCCCCTAGGCGCACCC-CCACACTCGTGGGCCCCTCGCA
GCTTCAGCGACCTACTTGTTCCTCCTATATATATCCATATACCCCCAAAACATCCAGGAGCACCACGAAACCCTATTTTC
ACCGCCGCAACCTTTTGTACTCAAGAGATCCCATCTTGGGGCCTTTTCCGGAGCTCCGTCGGA-GGGGGAATCAATCACG
AAGGGCTTCTACATCAATACCATAGCCTCTTCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGTTCCATAGTTATTA
GCTAGATGACTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTT-GCGGTGTG
>chr3B_612
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCAACCTTGCGCAGATGCCCATGCTGCCA
TTTCTTGCGGTCATGACCGCACCTGGTGCATCATAGTTTTGATATGTTATTGATTGATTAATTGGCTTGTGTGATAGCCG
ATACT--------GATGGTGATAAATCATTTCAAAACATGCAGGAAGGAGGAGGAGATTACAACATGTCATCCTTGCTGT
TGCCATTTCTCTTGGAGCACTATTTGTGCTAGTCGTCGTGCTTGCTTGTGTTCGCCGACAGAAGAGAGGGATCAAGCAGG
TGAACAAGGAAGAACAAGGTATATTACATTTCCAATAGAGCACAGGGATCCAGGGGAACAAGAGGAGGCGATGCTTACTC
GAATCACGAGTTTCTTATTGCAGACAATGCAGGGGAGGGCATGAACTATATTAGTTTGCAAGTGTTGGGAGCTGCAACAT
CCAATTTTTCTGTAAACAATAAATTGGGGGAGGGAGGATACGGAGAGGTTTTTAAGGTATGTATTCTATGTTGTTATGAA
TATTACATGAGAATTCAAATCCACACTACACCCTCTGTTCCTAAGCAGCTAAACATAAGATGTTTTGGCAGTT-------
-----CCTAAACGTCTTACATTTAGAAACATAGTCAGCAGTAATAATTTGGTGAATCATGTAATTTCATCCAAGATCAAA
CTTGCT-------TCTACACAGGGCGAATTGCAGGACGGAAATGAAATAGCTGTCAAAAGGCTGTCAGCAAACTCTACTC
AAGGGTTCAATGAGCTGAAAAATGAGATAGTGTTAGCTAACAAACTGAAGCACAAGAATTTGGTGCAGCTTCTCGGTGTT
TGCTTGCAAGAGAAACTGCTGGTGTACAAATATAT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr4A_1242
AATAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTGGTGAATTATTTAATTTAATCCAAGAGCAAA
CTTGCCTCTACTGTCTACATAGGGGGAAATGCAGGACGGAATGAAAATAGCCGTCAAAAGGCTGTCAAAGGACTCTGTTC
AAGGGTTTGGTGAGCTGAAAAATGAGCTAGTGCTAGCTAACAAACTTAAGCACAAGAATCTGGTGCAGCTTCTCGGTGTT
TGCTTGCAAGAGAAACTGCTGGTGTACGAATATATGCCTAATGGAAGCCTAGACACGATTATTTTCAGTAAT------TC
TCCCATCTCATCTTGTCAAAACTTTAG-------TACA------------CCACTAGTCTGC-TA--TTCTGCTGTTTTT
AGTTTGAGTGGTGCATGTGTGTC-------GCAGATTCGGAGAAGGCACACCAACTCGATTGGATGAAAAGAAGCATGAT
CATCTCTGGGATTGCTCGAGGTCTACTGTATCTCCACCAGGAGTCTCGTCTAAAAGTCATCCACCGTGACCTGAAGCCAA
GCAACGTCTTACTGGACCTGGATATGAACCCCAAGATCTCAGATTTTGGTCTTTCTA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr4A_1242
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AATAATTAGGTAAATTGTTTATTTTAATCCAAGAGCAAA
CTTGCT-------TCTACATAGGGCGAATTGCAGGATGGAACCAAAATAGCCGTCAAAAGGCTCTTAAAGGACTCTGCTC
AAGGGCTCGATGAGTTGAAAAATGAGCTAATGTTAGCTAACAGACTTAAGCACAAGAATCTGGTGCAGCTTCTCGGCGTT
TGCTTGCGAGAGAAATTGATGGTGTACGAATACATGCCTAATGGAAGCCTACACACGAGCCTTTTCAGTAATCCTCCCTG
TCCCAACTCATCTTGTTAAAACTTTAG-------TACAGCTAGCTATACACCCCTAGTCCGCATA--TTCTGCTGTTTTT
AGTTCGAGTGGTGCATGTATGTC-------ACAGGTTCAGAGAAGGCACACCAGCTGGATTGGACGAAAAGAAGCATGGT
CATCTCTGGGATTGCTCGAGGTCTATTGTATCTCCACCAGGAGTCTCGTCTAAAAGTCATACACCGCGACCTGAAGCCAA
GCAACATCTTACTGGACCTGGATATGACACCCAAGATCTCGGACTTTGGTCTGTCTA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr5D_1245
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AATTTGGTGAATTATTTAATTAAATCCAAGAACATA
GTTGCA-------TGTACATAGGGCGAATTGCAGAATGGAATGAAAATAGCCGTGAAAAGGCTGTCAAAGAACTCAGCTC
AAGGGTTTGATGAGCTGAAAAATGAGCTAGTGTTAGCTAACAGACTTGAGCACAAGAATTTGGTGCCCCTTCTCGGTGTT
TGCTTGCAAGAGAAACTGGTGGTGTACGAATATATGCCTAATGGAAGCCTACACACGAGCCTTTTCAGTAAT------TC
TCCCGACTCCACTTGTTAAAATTTACTACACTTTTACA------------CCACTAGTCTGCATA--TTCTGTTGTTTTT
AGTTCCAGTGGTGCATGTGTGTACTGTGTAGCAGATTCTGAGAAGGCACACCAACTGGACTGGACGAAAAGAAACACGAT
CATCTCTGGGATTGCTCGAGGTCTATTGTATCTCCACGAGGAGTCTCGTCTAAAAGTCATACACCGTGACCTGAAGCCAA
GCAACGTCTTATTAGACCTGGATATGAACCCCAAGATCTCAGACTTTGGTCTGTCTA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>chr3A_1848
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATTGATACGTCTCCAACGTATTTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTGTTTTGGATGTTTAATGGGCTTTATTATACA-TTTTATATTATTTTTGGGACTAAC
CTACTAAGCCA--AGGCCTAGTGCAAATTGC--TGTATTTTT-GCCTATTTTAGTGTTTCGCAGAAAA-GGAATATCAAA
CGGTATCCAAACGGAATGAAACCTTCGGGAGAGTTATTTTTGGAACAAACGTGATCGAGGGGACTTGGAGTAGACGTCAA
GAAAGAAGCAAGGAGGCCACGAGGCAGGGAGGCGCGCTTGCCCCCCTGGGCGCGCCCCCCACCCTCGTGGGCCCCTCGCA
GCTCCACCGACCTACTTCTTCCTCCTATATATATCCATATACCCCAAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCGCCGCAACCTTCTATACCCAAGAGATCCCATCTTGGGGCCTTTTCGGGAGCTCCGCCGGA-GGGGGAATCGATCACG
GAAGGCTTATACATCAACACCATAGCCTCTCCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTT-GTGGTGT-
>chr2A_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTGATACGTCTCCAACGTATCTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTGTTTTGGATGTTTAATGAGCTTTATTATACACTTTTATATTATTTTTGGGACTAAC
CTACTAACCCA--AAGCCTAGTGCAAATTGC--T-T-TTTTT-GCCTATTTCAGTGTTTCGCAGAAAA-GGAATATCACA
TGGAATCCAAAAGGAATAAAACCTTCGGGAGAGTTATTTTTGGAACAAACGTGATCCAAGGGACTTGAAGTAGACGTCAA
GAAAGGAGCGAGGAGGCCACGAGGCAGGGATGCACGCCTGCCCCCCTGGGCGCG-CCCCCACCCTCGTGGGCCCCTCGCA
GCTCCACCGACCTACTTCTTACTCCTATATATATCCATATACCCCGAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCGCCGCAACCTTCTGTGCCCAAGAGATCCCATCTTGGGGCCTTTTTTGGAGCTCCGCCGGA-GGGGGAATCAATCACG
GAGGGCTTCTACATCAACACCATAGCCTCTCCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTATCTTTGGATCTCAATACAAAGTTCTCCTTGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTT-GCGGTGTG
>chr5D_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTGATACGTCTCCAACGTATCTATATTTTTTGA
TTGTTCCATGCTATTATATTATCTGTTTTGGATGTTTAATGGGCTTTATTATACACTTTTATATTATTTTTGGGACCAAC
CTATTAACCGAAGAGGCCCAGTGCAAATTGC--TGT-TTTTT-GCCTATTTCAGTGTTTCGCAGAAAA-GGAATATCAAA
CAGAATCCAAATGGAATGAAACCTTCGGGAGCGTGATTTTTGGAACAAACGTGATCCAGGGGACTTGGAGTGGACGTCAA
GAAAGAAGCGAGGAGGCCACGAGGCAGGGAGGCGCGCCTGCCCCCCTGGGCGCA-CCCCCACCCTCGTGGGCCCCTCGCA
GCTCCACCGACCTACTTCTTCCTCCTATATATATCCATATACCCCGAAAACATTGAGGAGCACCACGAAACCCTATTTCC
ACCGCTGCAACCTTCTGTACCCAAGAGATCCCATCTTGGGGCCTCTTCCGGAGCTCCGCCGGA-GGGGGAATCGATCACG
GAGGGCTTCTACATCAACACCATAGCCTCTCCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCATCGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTT-GCGGTGTG
>chr5A_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTGATACGTCTCCAACGTATCTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTGTTTTGGATGTTTAATGGGCTTATTTATACACTTTTATATTATTTTTGGGACTAAC
CTACTAACCCA--AGGCCCAGTGCAAATTGC--TGT-TTTTT-GCCTATTTCAGTGTTTCGCAGAAAA-GGAATATCAAA
CGGAATCCAAACCGAATGAAACCTTCAGGAGAGTTATTTTTGGAACAAACATGATCCAGGGGACTTGGAGTAGACGTCAA
GAAAGAAATGAGGCGGCCATGAGGCAGGGAAGCGCGCCTGCCCCCCTGGGCGCA-CCCCCACCCTCGTGGGCCCCTCGCA
GCTCCATGGACCTACTTCTTCCTCCTATATATATCCATATACCCTGAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCGCTGCAACCTTCTGTACCCAAGAGATCCCATCTTGGGGCCTTTTTCGGAGCTCCGCCAGA-GGGGGAATCGATCACG
CAGGGCTTCTACATCAACACCATAGGCTCTCCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTTTGCGGTGTG
>chr5A_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTGATACGTCTCCAACGTATCTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTGTTTTGGATGTTTAATGGGCTTTATTATACACTTTTATATTGTTTTTGGGACTAAC
CTACTAACCCA--AGGCCCAGTGCAAATTGC--TGT-TTTTT--CCTATTTTAGTGTTTCGCAGAAAA-GGAATATCAAA
CGGAATCCAAACGGAATGAAACCTTCGGGAGAGTTATTTTTGGAACAAACGTGATCCAGGGGACTTGGAGTAGACGTCAA
GAAAGGAGCGAGGAGGCCACGAGGCAGGGAGGCGCGCTTGCCCCCCTAGGCGCG-CCCCCACCCTCGTGGGCCCCTCACA
GCTCCACTGACCTACTTCTTCCTCCTATATATATCCATATACCCCGAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCGCCGAAACCTTCTGTACCCAAGAGATCCCATCTTGGGGCCTTTTCCAGAGCTCCGTCGAAGGGGGGAATCGATCACG
GAGGGCTTCTACATCAACACCATAGCCTCTCCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGGTCTATAGTTATTA
GCTAGATGGCTACTTCTCTCTCTTTGGATCTCAGTACAAAGTT---CTCGATCTTCTTGGAGATCTATTCGATGTAATTC
ATTTT-CCGTTGTG
>chr2D_1850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGATACGTCTCCAACGTATCTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTATTTTGGATGTTTAATGGGCTTTATTATACACTTTTATATTATTTTTGGGACTAAC
CTACTAACCAA--AGGCCCAGTGCAAATTGTTGT-T-TTTTT-GCCTATTTCAGTGTTTCGCAGAAAA-GGAATATCAAA
CGGAATCCAAACGGAGTGAAACCTTCGGGAGAGTTATTTTTGGAACAAACGTGATCCAGGGGACTTGGAGTGGACGTCAA
GAAAGAAGCAAGGAGGCCACGAGGCAGGGAGGCGCGCCTGCCCCCCTGGGCGCGCCCCCCACCCTCGTGGGCCCCTCGCA
GCTCCACCGACCTACTTCTTCCTCCTATATATATCCATATACCCCAAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCGCCGCAACCTTCTGTACCCATGAGATCCCATCTTGGGGCCTTTTTCGGCGCTCCGCCGGA-GGGGGAATCGATCACG
GAGGGCTTCTACATCAACACCATAGCCTCCCCGATGATGTGTGAGTACTTTACCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTT-GCGGTGTG
>chr5D_1850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGATACGTCTCCAACGTACCTATAATTTTTGA
TTGTTCCATGCTATTATATTATTTGTTTTGGATGTTTAATGGGCTTTATTATACACTTTTATATTATTTTTGGGACTAAC
CTATTAACCGA--AGGCCCAGTGCAAATTGC--TGT-TTTTT-GCCTATTTCAGTCTTTCGCAGAAAA-GGAATATCAAA
CGGACTCCAAACGGAATGAAACCTTCGGGAGAGTGATTTTTGGAACAAACATGATCCAGAGGACTTGGAGTGGACGTCAA
GAAAGAAGCGAGGAGGCCACGAGGCAGGGAGGCGTGCCTGCCCCCCTGGGCGCA-CCCCCACCCTCGTGGGCCCCTCGCA
GCTCCAACGACCTACTTCTTCCTCCTATATATATCCATATACCCCGAAAACATCCAGGAGCACCACGAAACCCTAGTTAC
ACCGCCGCAACCTTCTGTACCCGTGAGATCCCATCTTGGGGCCTTTTCCGGCGCTCCGCCGGA-GGGGGAATCAATCACG
GAGGGCTTCTACATCAACACCATAGCCTCTCCGATGATGTGTGAGTAGTTTACCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTTGATCTTCTTGGAGATCTATTCAATGTAATTC
TTTTT-GCGGTGTG
>chr5A_1850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGATACGTCTCCAACGTATCTATAATTTTTTA
TTGTTCCATGCTATTATATTATCTATTTTGGATGTTTAATGGGCTTTATTATACACTTTTATATTATTTTTGGGACTAAC
CTACTAACCCA--AGGCCCAGTGCAAAATGT--TGT-TTTTT-GCCTATTTCAGTGTTTCACAGAAAA-GGAATATCAAA
CGGAATCCAAACGGAATGAAACCTTTGGGAGAGTAATTTTTGGAACAAACGTGATCCAGGGGACTTGGAGTAGACGTCAA
GAAAGGAGCGAGGAGGCCACGAGGCAGGGAGGCGCGCCTGCCCCCCTGGGCGTGCCCCCCACCCTCATGGGCCCCTCGCA
GCTTCACCGACCTACTTCTTCCTCCTATATATATCCATATACCCCAAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCGCCGCAACCTTCTGTACCCAAGAGATCCCATCTTGGGGCCTTTTCTGGAGCTCCACCAGA-GGGGGAATCGATCACG
GAGGGCTTCTACATCAACACCATAGCCTCTCAGATGATGTGTGAGTAGTTTACCATAGACCTTCGGGTCCATAGTTATTA
GCTAGATGGCTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTATTGGAGATCTATTCGATGTAATTC
TTTTT-GCGGTGTG
>chr5A_1850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGATACGTCTCCAACGTATCTATAATTTTTGA
TTGTTCCATGCTATTATATTATCTATTTTGGATGTTTAATGGGCTTTATTATACACTTTCATATTATTTTTGGGACTAAC
CTACTAACCCA--AGGCCCAGTGCAAATTGT--TGT-TTTTTTGCCTATTTCAGTGTTTCCCAGAAAA-GGAATATCAAA
CGGAATCCAAACGGAATGAAACCTTCGGGAGAGTTATTTTTGGAACAAACGTGATCCAGGGGACTTAGAGTAGACGTCAA
GAAAGGAACGAGGAGGCCACGAGGCAGGGAGGCGCGCCTGCCCCCTGG---GCGCGCCCCACCCTCGTGGGCCCCTCGCA
GCTCCACTGACCTGCTTCTTCCTCCTATATATATCCATATACACCCAAAACATCCAGGAGCACCACGAAACCCTATTTCC
ACCACCGCAACCTTCTGCACCCAAGATATCCCATTTTGGGGCCTTTTCCGGAGCTCCGCCGAA-GGGGGAATCAATCAGG
GAGGGCTTCTACATCAACACCATAGCCTCTCCGATGATGTGTGAGTAGTTTATCACAGACCTTCGGGTCCATAGTTATTA
GCTAGATGACTTCTTCTCTCTCTTTGGATCTCAATACAAAGTTCTCCTCGATCTTCTTGGAGATCTATTCGATGTAATTC
TTTTT-GCGGTGTG
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SS----------------
--------SS-------S---------------S--------S--------------------S-----------SS---
----SSSSSSSSS-------------------------------S-------------------------------S---
S---------------S----------------SS-----------------S-------S-S-------------S---
--------------------------S------S-S--------------------------------------------
--------S----------------------------------------------------------S--S---------
-----------------------S-----------------S-----------------------S--------------
--------------S--------S------------S-------SSS---------------S----S-----SSSSSSS
SSSSS-------------------S---S-S--SS--S------------------------------------------
----------------S-------S-------------S-----------S----S------------------------
-------------------------S---------S-S------------------------------------S-----
----------------------------------------------------------S----S--S-------------
-----S--------S----------S--------S----------------S----SSSSSSSSSSS-----------S-
-----------S------------------------S-----------S-------------------------SSSS--
------S-------S---------------------S-----S-----S--S----------------------------
-------------SS--S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
------------------------------S----S--------------------------------------------
-----------------------------S-------------S--------------S---------S-----------
-S----------------------------------------S--------------------------S----------
--------------------------------------------------------------S-----------------
------S----------S------------------------------------------------------------S-
--------------S-----S-----------------------------------------------------------
S----------------S------------S-----------------------------------S-------------
--------------------------------------------------------------------------------
--------------
>forward_416
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TACC
TTGTCGCACACCTTCC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_1865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGCCCACCATGCTTCACTAC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
