>input_sequence_77365
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------------------------------------------------------------------ATGGCGAGGCACAT
CCAAGCCGATCACGAGCCTGCAGATGACAGTGGTGGTGCTGCTGGTGCCGCGCTCGTGCTGTGGGACTGCGGCAGCGCGC
TCTACGACTCGTACGAGCTCACCGCCTTCAAGCGCCAGCTCGACGCCGCCGTGCTCGCCGGCCGCTCGCTCTCCATGCCG
CACCTCCCCGCCGCCAGCCCGGCCGTTCAGCCAGCCGGCCGCAGGAAGCGCGCGAGGCGGCTCCCCGCCCTGCTCCGGAG
GCTCTTCTCCAAGGTGCTGCGGCTGGCGTCGGCGCGCGGGGCGAGACACGACCGCTACCGGGCGTACGAGGGGTACGGCC
ACGGCGGCTACAGCGGCACGGGGTCGCCGTGGTCCGGGGCGCTGACGTCCATCCCGGAGGAGAGCGGCGGCAGCCCGGAG
GCGGGATCGTCCCCGGTCGTCCCCGGCCCGAGCGCGCTGCGCAGGGCACAGTCGGAGCGGTTCATCGGCAGCAAGACGGC
GACCCCCATGGTGCAATTCGATGTCGTCTTGTAG----------------------------------------------
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>chr7D_1_TraesCS7D01G327800
ACTCTCCAAGCATTGATCAGGCTTTCCCCTGCCTCCTGGCACTAGAGAGGTCTT----------TTTTTTTGAACCGGGT
TATCCCATTTCCATTACTGAGAACGGAAATACATCGGTCTTACAAGACCGAATTGGAGAGGTCACCTGAGGTGAGGACCG
GCGGAAAAACATAAACAACGA--TGTCTTCCTCATCTTGGTGGGTGTTTTTGTTTATGCAGGTTTGGTCCGTTACCAAGC
AAGCTATTCGATCTATCCAGGACAAGCGCCGGAATCGCTCTTATGACTTGGGGGGTTCGTCGACATCGTTACCCTGACTC
CCTAGAGTGGAATAATTCATCCGTTACATGGATGATAAGATCTCTGATCCATCTTTGTCTGATTCCGCTTGCGCTCCTCC
AATAATGTTTGAATGCGTTGAGAAAAAATACATTTGTATGGAATATTTTTATCCGCTGTTGCTCTCTGAAAGACATGCAA
GTTTGAAGTTC-AAAATGGTCTTGAGGCAGTAGTTGGGCTCTGATCAATACAGACGTGGACATGATCTCCTTCTAACAAT
AAACAAAACAAGCGTCCATATATGATATATCCACGTACGCCTCGATCGTCAGGTCTTCCATGGAAATTATGATCCAAAGT
TTAATGGTCAAGCCACTCAAGTAAATTAAGTGCTTCATTCGCAAAAAAAATAAAAATTGCTTACTGTGCGACAGATAAGC
GTATGCGTTTACACCTAATCATCAATCCCCCACAAAGAGTGCGTCCCACTCCCAAATCCACCTTTGGATCACCATCTC--
---CTTTTTCACTCACGTCGATCGGCCGCAAGTGGAGACGGAGGTCGATCGTGTCGTGTGAGCCGTGAGCGAGCTCGTCC
GCCCCCTTTATCACACGCTGCGCGCCGCGCGTTCATGCCACCTCCACCCACTTGTAAAGCGAGCCAGCC--------CCT
CTCTCCTTCCCTCTCTCATCCATTTCTTGCTGCTCTGATCGAAGCAAAAAAGGGAAAGCTATAAAGATGGCGAGGCACAT
CCAAGCCGATCACGAGCCTGCAGATGACAGTGGTGGTGCTGCTGGTGCCGCGCTCGTGCTGTGGGACTGCGGCAGCGCGC
TCTACGACTCGTACGAGCTCACCGCCTTCAAGCGCCAGCTCGACGCCGCCGTGCTCGCCGGCCGCTCGCTCTCCATGCCG
CACCTCCCCGCCGCCAGCCCGGCCGTTCAGCCAGCCGGCCGCAGGAAGCGCGCGAGGCGGCTCCCCGCCCTGCTCCGGAG
GCTCTTCTCCAAGGTGCTGCGGCTGGCGTCGGCGCGCGGGGCGAGACACGACCGCTACCGGGCGTACGAGGGGTACGGCC
ACGGCGGCTACAGCGGCACGGGGTCGCCGTGGTCCGGGGCGCTGACGTCCATCCCGGAGGAGAGCGGCGGCAGCCCGGAG
GCGGGATCGTCCCCGGTCGTCCCCGGCCCGAGCGCGCTGCGCAGGGCACAGTCGGAGCGGTTCATCGGCAGCAAGACGGC
GACCCCCATGGTGCAATTCGATGTCGTCTTGTAGTTGTAGCTCGTATGTGCATGGGGTAGTAGTAGTTACTTAGGTATCA
GACCATCACAAGCCTGTAAGATA-CCTGTATACTGCAGAATATGCACTCTGCAGTGAGTTCTTCTGTGCTGCTGTACATA
CAGTGTTCGTGTAAGAATTTACAGGTGAC-AACTAATGAAGT-GCGGCCATGGCAAAATAGCTTGTGGCCGTTTTTTTTT
TAC-ACGGCAAAGTATAGC--TCTTGCGACAAATTGGAACTTGGAAGCACGGTGGTTGAGGAGGATGCTTTCTC-GTTGA
CATCACTAGTGAGGTCAGGTGGGCATCTGTTTTTGTCACTCCCATGTGGTAATC------CGTTACGCGCATACTCACGG
GGTCACCGTGTTCAATTTTCTTCTCTGTCAGTTCCAAGATACGTAAGCAAATCAGATGAGCCATCGGCAAGCGCAGCTCT
CCTCCCATCCATGGCCTGAATCTTGTCTTCAGGCCATGGATGCGAGGAGGGAAAGGATCGCGAGAAAGACTGCCTTGGAG
CCTGTCAGCGCCAAAGGTGACGGCCGTGTGCAAAGTAATTTGCCAGATTTATGTCATAACTTCTGGGTCCTATTTGATTC
CCAAAATGTTAACTTGGTATTGAGATGGAATTAGGTAGAGCACCAGCAATTCGTGCATCACAGGTGCAATGGAGAAAACA
AGCTCAAATTTATCGACATGGTTTT---CCATATATATTCGTGAACTACAAGAGTTACGATGTACTTCCTATGTCTAGAT
ACATTCGTTTGAACGTCAACTAATTCCGGACGGAGGAAGTGCATTCTTTTAAGGAGGAAAGACCCACGACCTCTGCATCA
GAACGATGCATACGGTCATTTTATTAAAAGTCTAGCAAACCAAGGTTCACGGTGCAGTACAGCTCGTCGAAGGAGCACAA
AAAGTAAAATAAATAAACAACACCACAACCGACAATGAACAAGACAAGACGATTAAACATCTATCATATTAGTGGACCGC
CATCCAAACC
>chr7B_1
ACTCTCCAAGCATTGATCAGGCCTTCCCCTGCCTCCTCGCACTGGAGAGGTCTTTTTTTTTTCCTTTTTTTGAACCGGGC
TATCCCATTTCCATTATTGAGAACGGAAATACATCGGTCTTACAAGACGGAATTCGAGAGGTCACCTGAGGTGAGGACCG
GCGGAAAAATAGAAATAAGGATGTGTCTTCCTTTTCTTGGTGGGTGTTTTTGTTTATGCAGGTTTGGTCCGTTACCAAGC
AAGCTATTCGATCTATCCAGGACAAGCGCCGGAATCGCTCTTGTGACTT-GGGGGTTCGTCGACATCGTTTCCCTGACTC
CCTAGAGTGGAATAATTCATCCGTTACATGGATGATAAGATCTCTGATCCATCTTTGTCTGATTCCGCTTGCGCTCCTCC
AATAATGTTTAAATGCGTCGAGAAAAAATACATTTGTATGGAATATTTTTATCCGCTGTTGCTCTCTGAAAGACATGCAA
GTTTGAAGTTC-AAAATGTTCTGTAGGCAGTTGTTGGGCTCTGATC--TACAGACGTGGACATGATCTCCTTCTAACAAT
AAACAAAACAAGCGTCCATATATGATATATCCACGTACGCCTCGATCGTCAGGTCTTCCATGGAAATTATGATCCAAAGT
TTAATGGTCGAGCCTCTCAAGTAAATTAAC---------------------------TGCTTACTGTGCGACAGATAAGC
GTATGCGTTTACACCTA---ATCAATCCCCCACAAAGAGCGCGTCCCACTCCCACATCCACCTTTGGATCACCATCTC--
---CTTTTTCACTCACGTCGATCGGCCGCAAGTGGAGACGGAGGTCGATCGTGTCGTGTGAGCCGTGAGC----TCGTCC
GCCCCCTTTATCACACGCTGCACACCGCGCGTTCATGCCGCCTCCACCCACTTGTAAAGCGAGCCAGCC--------CCT
CTCTCCTTCCCTCTCTCATCCATTTCTTGCTGCTTTGATCGAAGCAAAAAAGGGAAAGCTATAAAGATGGCGAGGCATAT
CCAAGCCGATCACGAGTCCGCAGATGACAGTGGTGGTGCTGCTGGTGCCGCGCTCGTGCTGTGGGACTGCGGCAGCGCGC
TCTACGACTCGTACGAGCTCACCGCCTTCAAGCGCCAGCTCGACGCCGCCGTGCTCGCCGGCCGCTCGCTCTCAATGCCG
CACCTCCCCGCCGCCAGCCCGGCCGTTCAGCCAGCCGGCCGCAGGAAGCGCGCGAGGCGGCTCCCCGCCCTGCTCCGGAG
GCTCTTCTCCAAGGTGCTGCGGCTGGCGTCGGCGCGCGGGGCGAGACACGACCGCTACCGGGCGTACGAGGGGTACGGCC
ACGGCGGCTACAGCGGCACGGGGTCGCCGTGGTCCGGGGCGCTGACGTCCATCCCGGAGGAGAGCGGCGGCAGCCCGGAG
GCGGGGTCGTCCCCGGTCGTCCCCGGCCCGAGCGCGCTGCGCAGGGCGCAGTCGGAGCGGTTCATCGGCAGCAAGACGGC
GACCCCGATGGTGCAATTCGATGTCGTCTTGTAGTTGTAGCTCGTATGTGCATGGAGTAG---TAGTTACTTAGGTACCA
GACCATCACAAGCCTGTAAGATA-CCTGTATACTGCAGAATATGCACCCTGCAGTGAGTTCTTCTGTGCTGCTGTACATA
CAGTGTTCGTGTAAGAATTTACAGGTGAC-AACTAATGAAGT-GCGGCCATGGTAAAATAGATTGTGGCCGTTTTTTTTT
TTAAACGGCAAAGT--AGC--TCTTGCGACAAATTGGAACTTGGAAGCAGGGTGGTTGAGGAGGATGCTTTCTC-GTTGA
CATCACTAGTGAGGTCAGGTGGGCATCTGTTTTTGTCACTCCCATGTGGTAATC------CGTTACGCGCATCCTCACGG
GGTCACCGTGTTCAATTTTCTTCTCCATCCACTCCAAGATACGTAAGCAAATCAGATAAGCCAACAGCGAGCACAGCTCT
CCTCGCATCCTGGCCTGAA----------------ATGGATGCGAGGATGGAAAGGATCGCCAGAAAGACTGCCTTGGAG
CCTGTCAGCGCGAAAGGTGACGGCCGTGTGCAGAGTAATTTGCCAGATTTATGTCATAACTTCTGGGCCCTATTTGATTC
CCAAAATGTTAAGTTGGTATTCAGATGGAATCAGGTAGAGCACCAGCAATTCGTGCATCACACGTGCAACGCGAAAAACA
AGCTCAAATTTATTGACATGGTTTTAATCCATATATATTCGTGAACTACACGAGTTAAAATGTACTCCCTATGTCTAGAT
ACATCCGTTTGAGCGTCAACTAATTCCGGACGGAGGAAGT----------------------------------------
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>chr7A_196
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-----------------------------------------------TTTTGTTTATGCAGGTTTCGTCCATTACCAAGC
AAGCTATTCGATTTATCCAGGACTAGCGCCGGAATCGCTCTTGTGACCT-GGGGGCACGTCGACATCGTTACCCTGACTC
CCTAGAGTGGAATAATTCATCCGTTGAATGGATGATAAGTTCGCCGATCCAACTTTGTCTGATTCCGCTTGCCCTCCTGC
AATGATCTTTGAATGCGTCGATAAAAGTTT-ATTTGTATTGAATATGTTTATCCGCTGTTGCTCTCTGAAAGACATGCAA
GTTTGAAGGAAAAAAATGTTCTGAAGGCAGTAGTTGGGCTTCGCTCAGTACAGACGTGGACATGATTTCCTTCTGACAAT
AAACAAAACAAGCGTCCATATATGATATATCCACGTACGCCTCGATGTCAGGAAGA-CCATGGAAATTATGATGCAAAGT
TAAATGGTCAGGCCACTCAAGTAAATTAAG---------------------------TGCTTACTG--CGACAGATAAGC
GTATGCGTTTACACCTA---ATCTATCCCCCCCAAAGAGTGCGTCCCACTCCCACATCCACCTTTGGATCACCATCTCTG
CACCTTTTTCTCTCACGTCGATCGGCCGCAAGTGGAGACGGAGGTCGATCGTGTCGTGTGAGCCGTGAGC----TCCCTC
GTCGCCTTTATCACACGCTGCACACCGCGCGTTCATGCCACCTCCACCCACTTGTAAAGCGAGCCAGCAGCCCCTCTCCC
CTCTCCCCCTCCCTCTCATCCATTTCTTGCTGCTTTGATCCAAGCAAAAAAGGGAAAGCTATAAAGATGGCGAGGCACGT
CCAAGCCGATCACGAGCCCGCAGATGACAGTGGTGGTGGTGCTGGTGCCGCGCTCGTGCTCTGGGACTGCGGCAGCACGC
TCTACGACTCCTACGAGCTCACCGCCTTCAAGCGCCAGCTCGACGCCGCCGTGCTCGCCTGCCGCTCGCTCTCCATGCCG
CACCTCCCCGCCGCCGACCCGGCCGTCCAGCCAGCCGGCCGCAGGAAGCGCGCGAGGCGGCTTCCCGCCCTGCTCCGGAG
GCTGTTCTCCAAGGTGCTACGGCTGGCGTCGGCGCGCGGGGCGAGACACGACCGCTACCGGGCGTACGAGGGGTACGGCC
ACGGCGGCTACAGCGGCACGGGGTCGCCGTGGTCCGGGGCGCTGACGTCCATCCCGGAGGAGAGCGGCGGCAGCCCGGAG
GCGGGGTCGTCCCCGGTCGTCCCCGGCCCGAGCGCGCTGCGCAGGGCGCAGTCGGAGCGGTTCATCGGCAGCAAGACGGC
GACCCCCATGGTGCAATTCGACGTCGTCTTGTAGTTGTAGCTCGGATGTGCATGC--------TAGTTACTTAGGTATCA
GACCATCACAGGCCAGTAAGATAACCTGTATACTGCAGAATATGCACTCTGCGGTGAGTTCTTCCGTGGTGCTGTACATA
CAGTGTTGGTGTAAGAATTTACAGGTGACAAACTAATGAAGTGGCGGCCATGGCAAAATAGCTTGTGGTCGTTTTTTTTT
AAC-ACGGCAAAGTAGCTCGATCTTGCGACAAATTGGAACTTGGAGGCACGGTGGTTGGGGAGGGTGCTTTCTTAGTTGA
CATCAGTAGTGAGGTCAGGTGGGCATCTGTTTTTGTCACTCCCATGTCCATGTGGTAATGCGTTACGCGCACCCTCACGG
GGCAACCGTGTTCAATTT--------------------------------------------------------------
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>SNPs
----------------------S--------------S-----S-----------------------------------S
----------------S-------------------------------S-----S-------------------------
---------S-S---S--S-------------SS----------------------------------------------
------------------------------------------S------S------------------------------
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------------------S-------------------------------------------------------------
------------------S---SS-----------------------S--------------------------------
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------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-----------------SSS----------------------------------S-------------------------
----------------------------------------------------------------------SSSS------
---------------------S-S--------------------------------------------------------
----------------------------------S---------------------------------------------
------------------S-------------------------------------------------------------
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-----S-----------------------------------------S--------------------------------
-------------------------------------------------------S----SSS-----------------
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---------------S----------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------------------SS--SSS-------------------------S-----S-S--S---S-------
----S-----SS-S-SSS-SSSSSSSSSSSSSSSS-------------S------------S------------------
-----------S--------------------S----------------------------------S------------
------------S--------S---------S------------------------------S------S-SSS------
-------------S------------------------------------S------SS-------S-------------
----S-------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_172
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------------------------------------------------------------------------GAGGACCG
GCGGAAAAACAT--------------------------------------------------------------------
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>reverse_2035
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----------------------------------CATGGATGCGAGGAGGGAAA--------------------------
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