>input_sequence_77341
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-------------------------------------------------ATGCTCACCATTGCTTTGCTATGGTATTGGT
GGCAAGAAAGAAATCGTGGAAATCATGGTGAATGCAGAGCCACAACGGAGGAGTTCCAATATGATATTCGGTTTCATGTG
AATGAATGGAAGGAGTTCGTTGATAGCAAGCCTGCAGTCCTTAATACCACTGTCGACTGCTCTTGGGTGCCACCACCGCT
TAACACAATGAAGATTAATATTGATGGTGCTTATTCAGCACAAGCTGGGGGTGGCGGATGGGGACTGATATGTAGAGATG
CTACCCGAGAGATACTATTTGCTGTTGGTGGTTCATCCTCAGCCATGGCCAGTGCCCTTCATGCTGAGACGACAGCCCTG
CTAACAAGCTGTGTCAATCTTGCTGATCAAATAGGTGTGGGGAGAGTTGAGTTTGAGACCGATTATCTAGTACTG-AACA
AGCTGTGTCTATTGATATTGATGATCGGTCTTCTCTTGGACAAGCCTTTAGAGAACTCAAGTTTAGGGTTGCTACATGTT
TTATCCAAGCTAGTGTAG--------------------------------------------------------------
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>chr6A_1_TraesCS6A01G198300
ATCATTATATATATATAGGACAACACTATTCTAATCACAGGATTAGAATAGTTATTTGGATCATGACACGTCCTATAAGA
GCCGAGATATATCCTCCGAAACTCCTGAACCGGTACAGTAGAAAAAAAAACATCCCCGCCCAATCCCCTGGCGCATCCCC
GACCCAATCCCCACCTTCCCCGCTGGGTTGCCAGCCACCGGATCTGCTGCCCACCGGCGTGTGCTGCCGGCAACCGGAGC
CGCCGCCCACACCCCCTGATCTTTCGTAGCCGAACCACCTCCCCGGATCCCCACGCCGCCGCACGCCCTCCCCGGAGAAC
CCCATCGTCGCACCCCCATCCTCATCCTCACCACCAACCGCCGCCCATGGCCTTCCCGACCTCCAACCACCACGCCGCTG
GCCCAACATCCGACCACCGCCGTGGGCGCATCCATTCCCAGGGACGCAGGTGCGGCAGAGCGCCGCCCGTCCATCCTACG
GCGCCGTCTCCGCCCCCCATAAGGAAACCGTGCCGCCGCCGCCCCCAACGTCCCACGCCCGCAAATTCCATGGTACCACC
GTCACAACCACTCTCGCCTGCCGGTGTCGAGAATGGATGCGGCCGCCCTTGCACACTGCCCTCGTGCTGCTGCTGGCCGG
CCCTCATACGCATACACGACCTCTGCCGGAGC-TCCTGCAGCCGCTGTCACCGCCCTACCATCTGCTCGCGACCGCGGCC
CCTCCGTCCTCCTCTCAGGAGGCCGTTGGTAACCCATGGTATGTTGTAGGTGAGCAAAACAGGATGTTGTCCTCCTCTCT
TCTTGTT-------------------------------------------------------------------------
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---------------GGTTCCTGTTATCACCACAAAAATAGAGCACACAAAAGACTCGAGCTGCTAGTTTTCGTACACTT
CGTCAAAGCACCTATCACTTCTTCAAAAATCTACAGGAACAAAGTGAGGGAGTGCGAATGCATTCATCTTAGCTAGCTTC
AGCAAAGGAAGTTGTCCATGCAGTCACCCGATTACCCTAGGAACATAGGATGCTCACCATTGCTTTGCTATGGTATTGGT
GGCAAGAAAGAAATCGTGGAAATCATGGTGAATGCAGAGCCACAACGGAGGAGTTCCAATATGATATTCGGTTTCATGTG
AATGAATGGAAGGAGTTCGTTGATAGCAAGCCTGCAGTCCTTAATACCACTGTCGACTGCTCTTGGGTGCCACCACCGCT
TAACACAATGAAGATTAATATTGATGGTGCTTATTCAGCACAAGCTGGGGGTGGCGGATGGGGACTGATATGTAGAGATG
CTACCCGAGAGATACTATTTGCTGTTGGTGGTTCATCCTCAGCCATGGCCAGTGCCCTTCATGCTGAGACGACAGCCCTG
CTAACAAGCTGTGTCAATCTTGCTGATCAAATAGGTGTGGGGAGAGTTGAGTTTGAGACCGATTATCTAGTACTG-AACA
AGCTGTGTCTATTGATATTGATGATCGGTCTTCTCTTGGACAAGCCTTTAGAGAACTCAAGTTTAGGGTTGCTACATGTT
TTATCCAAGCTAGTGTAGTGCATACACCACGTGAGTGTAACAAGCCAGCGCATGTGTTGGCAGCGTTCGGTTCGGGTCTA
GCTCATGTTGAAAGCCGCCAGTGGCCGTCAAACTATCCTGATGATGTAACCCATGCTATAACCGGCGATTTAGCCGCATG
TTAATGGAATACGAGTGTTCCATATCAAAAAAAATATACAGGAATGCTAAGCTATGGCCCCGCTTCTACTGAAATTGTTA
TGCACAGTGTTCCTGTAGCCTCTCACACGTATTTGATTATTTCATTTCGCCGCTTAGATTTTGTAAC--GTTCAAAGTTT
ATTATGGGGAGGCTTCACCAACATGCCCCAAAGAAGTGTGTCATGGACCTTGTAACTCCGTCCCCTTTTTATGTTCATGC
ACTTTCTTCACTTGATTTGATGGAAGGAAGTTCAAAGGTTAATGTCTAGAGAGTTCAATCATTGGACGTCGGGAAGAATG
CATCTTAATGATGAAAAAATGCATCAAGAAAAAAATGCATTCATCAAAGAGAAGT-GCAAGCCTATTTTCGGCAGGTTTA
AAAATGTTAAATTTGGAAAATGTACACAAAAAGATTGCTGAAAAAAGATGGGCGCTGCAAAAATGATACTAAACAAACAA
AAA----------------------------------------------------AAACACTAGTCAGCAGGTTGCACGG
GCCCATGACATGCTCATAAATATAAAT-----TTTTTTATGGTGACAAAATTTCTTTGATT-CCCATCTCTATGTAGAGA
AACAGTGAGCAAATAAGACCGAAAAA--ATTATTGATATTGTTTTCCATGATTTTTCGTGATTTTACCCTTTTATGTAGA
GAAACAGTGAGCAAATAAGACTAGTCTGCAGGGTGTTCAACATAAGGTTATTATTCACCAATACACTGCTTTTCTCTGGA
AGCAGAAAAAGATTGAAGTTCATCCTGGCAACCCAATGTGGTTCAATTTGTATATTAAAAGAAGATCCTAGAAATTCAAA
ATTAAATAATGATGTGATTCAATTTTTATTTAGTAAGAAAG
>chr7A_610
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-------------------------------------------------TGCACACTGCCCTTGTGCTGCTGCTAGCCGG
CCCCCATCCGTAGACATGACCCCTCCCCGGAGTTCCTGCAGCCACCGTCACCGCCCAACCATCTGCTCGCGACCGTGACT
CTTCTGTCCTCCTCTCAGGCGGCTGTTGGTAAGCAATGGGATACTGCAGGTGAGCAAAACAGGATGTTGTCCTCCTCTCT
TCTCTGGCGGCTGTAGGTGAGGATAGAAACTCCTTTGTTCTATGTACTTCTCTTCATTTTCTTGGTCCATCCAGATTGTA
CTCATCAGCAAGTCAAACGAAGATCTCGTGGCAGTTCGAACAAGATGCTTGTGTTGCTGATTATGCTAGTCATTGTCCCC
TGTCGGGACACCTTCGGTTCCTGTTATCACCACCAAAACAGAGCACACAAAAGACTCGAGCTGCTAGTCTTTGTACACTT
CCTCAAAGCACCTCTCTGCTTC----------------------------------------------------------
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-----------------------------AAAAATATACAAGAACGCTAAGCTATGGCCGCGCTTCTACTAAAATTGTTA
TGCACAGTGTTCCTGTAGCCTCTCACACGTATTCGATTATTTCATTTTGTAGCTTAGATTTTGTAACTTGTTCAAAGTTT
ATTGTGGGGAGGCTTCACGAATATGCCCCAAAGTAGTGTGTTATAGACCTTGTAACTCCTTTCCCTTTCTATGTTCATGC
ACTTTCTTCACCTGATTTGATGGAAGGAAGTTCAAAGATTAATGTCTAGAGAGTTCAATCATTGGATGTTGGGAAGAATG
CATCTTAATGATGAAAAAATGCATCAA-AA---AATGCATTCATCAAAAAGAAGTTGCAAGCCCATTTTCGGGAAGTTTA
AAAATGTTAAATTCTGAAAACGTACACAAAAAGATTGCTGAAAAAATATGGGTGCCGCAAAAATGATACTAAACAAACAA
ATAATTTGAAGTTCGAATTCATGGAGTTAGGAAGTTTAATAAATG--AAAAAAA----GACTAGTCTACCAGTTGCACTG
GCCCATGACATGCTCGTAAATAT-AAT-----TTTTTTATGGTGACAAAATTCCTTTGATTTCCCATTTCTATGTAGAGA
AACAATGAGCAAATAAGACC--AAAAA-GTTATTAATGTTGTTTTTCCATGGTTTTCGTGATTTTACCTTTTTAAGTAGA
GAAACAGTGAGCAAATAAGACTAGTCTGCAGGGTGTTCAGCATAAGATTATTATTCACCAATACACAGCTTTTCTCTGGG
AGCATAAAAAGGGAGAAGTTCATCTTAGCAACCCAATGTGGTTCAATTTGTATATTAAAGGAAGATCCTAGAAGTTCAAA
ATTAAATAACGGTGCGGTTCAATTTTTATTTAGTAAGAAA-
>chr3A_611
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--------------------------------------------------GCACACTGCCCTCGTGCTGCTGTTGGCCGG
CCCTCATCCTTAGACACGACCCCTCCCCAGAGTTCCTGCAGCCGCCGTCACCGCCCTACCATCTGCTCGCGACCGCAACC
CTTCTGTCCTCCTCTCAGGCGGCCGTTGGTAAGCAACGGGATACTGCAGGCGAGCAAAACAGGATGTTGTCCTCCTCTCT
TCTCTGGCGGCTGTAGGTGAGGATAGAAACTCCTTCGTTCTCTCTGCTTCTCTTCATTTTCTTGGGCCATCCAGATTGTA
CTCATCGGCAA--------AAGATCTCGTGGCAGTTCGAACAAGATGCTTGTGTCGCTGATTGTGCTAGTCGTCGTCCCT
TGCCGGGACACCTTCGGTTCCTGTTATCACCACCAAAACAGAGCACACAAAAGACTCGAGCTGCTAGTTTTCGTACACTT
CCTCAAAGCACCTCTCTGCTTC----------------------------------------------------------
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-----------------------------AAAAATATACAGGAATGCTAAGCTATGGCCGCGCTTCTACTGAAATTGTTA
TGCACAGTGTTCCTGTAGCCTCTCACATGTATTCTATTATTTCATTTTGTAGCTTAGATTTTGTAACTTGTTCAAAGTTT
ATTGTGGGGAAGCTTCACGAATATGCCCCAAAGTAGTGTGATATAGACCTTGTAACTCCTTTCCCTTTTTATGTTCATGC
ACTTTCTTCACCTGATTTGATGGAAGGAAGTTCAAAGATTAATGTCTAGAGAGTTCAATCATTGGATGTTGGGAAGAATG
CATCTTAATGATGAAAAAATGCATCAA-AA-AAAATTCATTCATCAAAAAGAAGTTGCAATCCCATTTTCGGGAGGTTTA
AGAATGTTAAATTCTGAAAACGTACACAAAAAGATTGCTGAAAAAACATGGGTGCCGCAAAAATGATACTAAACAAACAA
ATAATTTGAAGTTCGAATTCGTGGAGTTAGGAAGTTCAATAAATG--AAAAAAACAAAGACTAGTCTACCGGTTGCACGG
GCCCATGACATGCTCGTAGATAT-AAT-----TTTTTTATGGTGACAAAATTCCTTTGATTTCCCGTTTCTATGTAGAGA
AACAATGAGCAAATAAGACC--AAAAAAGTTATTAATGTTGTTTTTCCATGGTTTTCGTGATTTTACCTTTTTATGTAGA
GAAACAGTGAGCAAATAAGACTAGTCTGCAGGGTGTTTAGCATAAGATTATTATTCACCAATACACCGCTTTTCTCTGGG
AGCATAAAAAGAGAGAAGTTCATCTTGGCAACCCAATGTGGTTCAATTTGTATGTTAAAAGAAGATCCTAGAAGTTCAAA
ATTAAATAACGGTGCGGTTCAATTTTTATTTAGTAAGAAA-
>chr3D_1056
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------------------------ATGGTGAACGCAGAGCCACAACGGAGGAGTTCCAATATGCTGTTCGGTTTCATGTG
AATGGACGGAAGGAGTTCCTTGGTAGCAAGCCTGCAGTCCTTAATACCACTGCTGACTGCTCTTGGGTGCCACCACCGCT
TAACAC--TGAAGATTAATATTGATGGTGCTTATTCAGATCAAGCTGGGGGTGGCGGATGGAGACTCATATGTAGAGATG
CTACCCGAGAGATCCTATTTGCTGCTGGTGGTTCATCCTCATCCATGGGCAGTGCTCTTCATTCTGAGAAGACAGCCCTG
CTAACTGCA---GTCAATCTTGCTGATCAAATGGGTGTGGGCAGAGTTGAGTTTGAGACCGATTGTCTAGTACTGCAACA
AGCTGTGTCTACTGATGCTTACGATCTGTCTTCTCTTGGACAAGCCTTCAGAGAACTCAAGTTTAAGCATGCTACATGTT
TTATCCAAGCTAGTGTAGTGCATACACAACGTGAGTGTAAAT--CCAGCGCATGTGTTGGCAGCGTTCGGTTCGGGTCTA
G-------------------------------------------------------------------------------
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-------------------------------------------TTCCATGT-----------------------------
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>chr3D_1703
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--------------------------------AATCTATAGGAACGCTAAGCTATGGCCCCGCTTCCACTGAAATTGTTA
TGCACAGTGTTCCTCTAGCCTCTCACACATATTCGATTATTTCATTTCGTAGCTTAGGTTTTGTAACTTGTTCAAAGTTT
ATTGTGGGGAGGCTTCACGAACATGCCCCAAAGAAGTGTGCCATGGACCTTGTAACTCCTTCCCCTTTTTATGTTCATGC
ACTTTCTTCACTTGATTTGATGGAAGGAAGTTCGAAGATTAATCTCTAGAGAGTTCAATCATTGGATGTTGGGAAGAATG
CATCTTAATGACGAAAAAATACATCAAGAA-AAAAATCATTCATCAAAAAGAAGTTGCAAGCCCATTTTTGGGAGGTTTA
AAAATGTTAAATTTGGAAAATGTACACAAAAAGATTGCTGAAAAA-GATGGGCGCCGCTAAAATGATACTAAACAAACAA
ATAAAATGAAGTTCGAATTCACGGAGTTAGGAAGTTCAATAAATGAAAAAAAAACAAAGACTAGTCTGCAGGTTGCACAG
GCCCATGACATGCTCGTAAATAT-AAAATTTGTTTTTTATGGGGACAAAATTCCTTTGATT-CCCATTTCTTTGTAGAGA
AACAGTGTGCAAATAAGACCCAAAAAA-ATTATTGATGTTGTTTTCCATGATTTTTCATGATTTTACCTTTTTATGTAGA
GAAACAGTGAGCAAATAAGACTAGTCTGCAGGGTGTTCAGCATAAGGTTATTATTCACCAATACACCGCTTTTCTGTGGG
AGCAGAAAAAGAGAGAAGTTCATCCTG---ACCCAATGTGGTTCAATTTGTATATGAAAAGAAGATCCTAGAAGTTCAAA
ATTAACTAATGATGTGGTTCAATTTTTATTTAGTAAGAAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
-------S--S-S--------S--S--S-SSS-------------S-------------------------------S--
-S--S--------------S------------S-S----S--SS--S---------------------------------
---SSSS-------------------------------------------------------------------------
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---------------------------------S----S-----------------------------------------
-S-----------S--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------S------------------------------S-S--------------
----S-S-----------S---S-----------------------------SS--------------------------
------SS------------------------------SS---------------------S----S-------------
-------------S----------S----------------S------S------S------S------S----------
-----SSSSSSS--------------------S--------S----------------------S---------------
-----------S----SS-S-S----S---------------------S----------------S-SS-----------
---------------------------S------------SSSS------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------
---------------------------------S---------------SS-----------------------------
---S--------------S----------------------------------------S--------------------
-------------------------------------S----------------------------S--S----------
------------------------------S-----------------S--------------S--------S-------
-------------------------------------------------------S------------------------
-S--------------------------------------------------------S-------S-------------
---------------S-------S----------------------------S--------------S------------
--------------------S----------------S------------------------------S-----------
---------------------------------------S--------------------------S------------S
------------SS-----------------------------------------------------------S------
----------------S------------------------
>forward_265
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-----CCCACACCCCCTGATCTTTC-------------------------------------------------------
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>reverse_1810
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-------------------------------------------------CCCATGCTATAACCGGCGAT-----------
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