>input_sequence_77333
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---------------------------------------------------------------------------ATGGC
T---TCGACGGCGGCGGGCGCAAGCAGCAGCGGC---------GAGGTGGTTGCCGTGGGCGACGAGAGCAACAAGATGT
TCACGCTGATCAGCTCCGACGGCGAGAGCTTCGAGATCACGGAGGAGGTGGGCAAGATGTCGCAGACCATCAAACACATG
ATCGAGGACGGCTGCGCCGACAACGGGATCCCCCTCCCCAACGTCCCCGCGAAGACCCTCAGCAAGGTCATCGAGTACTG
CAACAAGCACGTCGTCGT---------------------CGACGACAACAAC----------------------------
--------------------------GCCAGCGCCAGCGAGAAGGAGGACCTGAAGAGCTTCGACGCCAAGTTCATTGCC
GTGGACCAGGCGACGCTGTTCGACCTCATCCTCGCCGCCAACTACCTTGACGTCAAGGGGCTCCTGGACCTGAGCTGCCA
GACGGCGGCCGACATGGTCAAGGGCCAGCCGGTCGAGGGCATACGCAAGATGTTCAACCTCGAGAACGACTTCACGCCGG
AGGAGGAGGCGGAGATCAGAAGGGAGAACCCCTGGGCGTTTGATCTTTGA------------------------------
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>chr5B_1_TraesCS5B01G165700
ATCTAATATACTCCGCTGTATTTTTTGTAATCTGACATGG-AGGGAGTATTATGCCAAAATTTGTCTGTATAGTGCTCCC
TCATCCTTTAATACTTTCAAGTGCGGGATACAAGTGCTCCCGTGCTACAATGGATACGAAATGGAGTGATACGTGTTCAC
AAACTTGAAAACAAATCACCA---TTTTTTTTACATTTTAGTATATATCATTAACATATTATTTTTGCGTGGAATCATTA
AAATATTTTTGGTTCCGCCCATACTTTATTCATTTTATTTATTTGCATGATGGGAGGGAAATTTGGAGCAAC--------
------------------------------------------------------------------CGCCACATTGGTTC
CATCCGAACCGGCGCCCCCCCTTTTTTTTTTGAACGATATAAAGAAAGCCCCCTTGTAAAACGACTGTTCCATTGCTATA
TATATAGCACTTCGTCTAGTTTGATCATTTGTTCTTTTCGATCTCAAACACGTTATGAGCACGTACTT-CTACTAAAGAG
CGAAAACAACGGAGACACCAG-----------------------------------------------------------
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-----------------------------------------------------------AAAAGGGAGGAGCGAGCACTC
GCCGGTGAGATGTCCGGCCTCTTCTCCTCCTTGTCTGATCCGTGGTGATGGCCGCCGGTTGCTGCTTCGGCCGGCCACCG
CGCCAATGGAAGAGGCGCGCGTGGCGGTTGCCGCTTCGGCCGGTCACCGCGTCGCTGGAAGAGGCGCGCGTGGTGATCAC
CACGCCCCTGGTGACGGTCTTGGCGCCT-------------------------------------------------TGG
AATTTTTCGAATTTACTGTTCATAGAAGGCGTAGGGGCACCCGAGAGCTGAAAAACCACTCTCAATGTTTGAAAGGCA--
--TACGT-ACTCTTGACTGATTCCGTGAGATCAATCATTGTCGCGTCCGACAAGAGATCCGATCCATCTCGAAACCTGAG
TAGTACATCGAGTCGGTCTCTTGTTGCC------TTGTCTGGCCCTTTACATACGGGAGT-CCTAGGTGG-CCTGAACCA
AATCGATCCAAGCTTACGATCAAGATCAAGAGTCGACGAGATCCAAGC----------------AAGCGGGAACCATGGC
T---TCGACGGCGGCGGGCGCAAGCAGCAGCGGC---------GAGGTGGTTGCCGTGGGCGACGAGAGCAACAAGATGT
TCACGCTGATCAGCTCCGACGGCGAGAGCTTCGAGATCACGGAGGAGGTGGGCAAGATGTCGCAGACCATCAAACACATG
ATCGAGGACGGCTGCGCCGACAACGGGATCCCCCTCCCCAACGTCCCCGCGAAGACCCTCAGCAAGGTCATCGAGTACTG
CAACAAGCACGTCGTCGT---------------------CGACGACAACAAC----------------------------
--------------------------GCCAGCGCCAGCGAGAAGGAGGACCTGAAGAGCTTCGACGCCAAGTTCATTGCC
GTGGACCAGGCGACGCTGTTCGACCTCATCCTCGCCGCCAACTACCTTGACGTCAAGGGGCTCCTGGACCTGAGCTGCCA
GACGGCGGCCGACATGGTCAAGGGCCAGCCGGTCGAGGGCATACGCAAGATGTTCAACCTCGAGAACGACTTCACGCCGG
AGGAGGAGGCGGAGATCAGAAGGGAGAACCCCTGGGCGTTTGATCTTTGAAGCTGTATAAGATTTCCTAGGTTTTCTTGC
GTCTAAATTAGTAATGGATGATTAGGCTAGTTTGTTTACTAGGTTGTTTGAAGCGGTGAAAATCTATCTATACTATTTAC
TAAAATAGTGTACTCCCTACTATATATATTTATTAAAATAGTGTACTCCTTCCGTTTTAATATAAAATATAAGATGCATC
AATTTTTCGTGAAAGACATACATATACGTGTTTTTCGATCAAAATTATAGAATAATCAGTGGCGGATCCAAGACCCAGGC
CGGGGGGGCCTGGGTCTGGGGCGTTAGGTTGATTTACTTTGTTGCTGTAGCAGCCTGGGCCCTGGGCTTGGCCCAATCTA
GGTCCGTCTCTGAGAGTAATGAACATCTATAATTTAAAATTAATAAAATAGGATTTTTCATGACGAATCTTATGATACAA
ATTGGATATAGTATTAATTTGTAAATGAGATAACATCAGCCAATTAATTGGATATATAGTATCTAATTTGGACTTAAACA
TAATTGAGCAATAATTTCATAGATTAAACTGAGTACACAAAGCAAAGGTATATGGATCACAGACGAAAGCCATTATCTAA
TTGGATATAATCTACAATGAGATATTAGAGACAGAATTAATTCTTTGCCTGTTTGAAGCAAATCGTGCAGTTAACAAATC
GTTTTGCACGAGACAATAGGCGACAAACAAATAACTAGCTCAACATGCTTGTGGCGCTCACACACTTTTGTTAAACCATG
CGCCCAACAAATGTATTGCATAAATGTTTATCCGAACCAACGTATGAGTGGGTGCGGTGGTGGTGTGTTTCATTATCCTC
TAGGTTGACGGCGGGGTCAACATTGGTTTAGGAAAATAATAAGAAAAACTTTTTCTTTAAGTTGAAGCGAAAGATATATA
GTACATGTCTTTTCGTAGGTTAGAAGATCCCAATTTTAAGTTTCTTTCCATCCTCTACTTGATTTTTTTTCATAATTTGT
TAAAGCTTAC
>chr5D_1
ATCTAATATACA---CTGTATTTTTTGTAATCTGACATGGGAGGGAGAATTATGCCAAAATTTGTATGTCTAGTGTTCCC
TCGTCCTTTAATACTT----GTGCGGGATACAAGTGCTCCCGCGCTACAACGGATATGAAATGGAGTGATACATGTTCAC
AAACTTGAAAACAAATCATCATGTTTTTCTTTACATTTTAGTATATATCAA---------------------------TA
AAATTTTTTTGGTTCCACCCATACTTTATTCATTTTATTTATTTGCATGATGTGAGGGAAATTTGGAGCAGAGTGGTGAG
GATTGTTAGGATTGATTAAACTTGGTAATTAAGGGATTAATCCCTGCTTGTAATAACTTTATGAATCGCCGCGTCGGTTC
CATCCGAACCAACGCCCCCC---------------------------------TTGTAAAACGATCCAGTGCTG------
TATATAGCACTTTATCTAGTTTGATCATTTGTTCTTTTCGATCTCAAACACGTTATGAGCATGTACTTTCTACTAAAGGA
CGTGCTGGATACATTCCAGAAATGTACGGGACAACTCCTAAGCCAGAACAAATGCTCCCTCTTGTTTAGTGAGGTTTGCC
GTGCGGATATAAGAGAGGAAATTAAACATATTCTGGGGGTGGTCGCTGAATCCTTTGAAAGCAAGTATCTTGGCTGCCTA
CTCCCGAGGGTAGAATGAAAGATGAGCAGTTCCAACCAATCATGGACAGATTCGGTAAGAGGTGTAGTGACTGGTTAGAG
AAGTTCATGTCGTTTGCAGCAAAGGAAGTTCATGTGAAGTCGGTCGTCCAGGCCCTCCCAACTTTTACCATGAGTGTCTT
TATGCTTTCCAAAGGCTTCTGTGACAAATATGAGAAAATGATTCGGAACTTCTGGTAGGGTGACGAAGAGGGGCATAGGA
AGGTACATTGGATGGCGTGGGATCGCATGATCAAGCCAAAGAGGGCGGGGGGTATTGGATTTAGAGATGTGCATTTGTTT
AACCAAGCGCTTCTGGCCAAGCAGGGATGGAGGCTCATACAAAATCCAGATAGCCTATGTGCAAGAGTTCTCAAGTCAAA
GTACTACCCAAATGGGAACCTGCTGGGCACAGTGTTTGCAAATGATGCGTCTCCGGTCTGGAGAGCCATTGAGTTTGGTT
TGAAACTTCTGAAAAAGGGTCTGATCTGGCGGGTGGGGGATGGAAAAAGCATTCAAATCCAGAGAGATCAATGGATCCCA
AGAAAAGAGGGCCTTATGACTGCTGTCTTCATTAGGAGACCCCGGATTAGATGGGTCAACCAACTTATGATGGCTGATAA
GAAGGAATGGAATGTGCCTCTCATCAGGCAAATCTTCTACCCTTTTGATGCTGATGAAATCTGCAAGCTCAATATCCCTT
CTTCGGAGGTGGGCGACTGTATTGCTTGGCATTATGAGAAGAATGGCATTTTCTCAGTTAAGAGCGTCTATAGACTCGCG
GCTGCTAACCTAGAGCAAGTGTCTCACACCCCGTCGAGCTCCACTAGGAACCTAAATGATCGTAGCATCTGGGATCTCAT
TTGGAAAACAAAAGTCCACGGGAAGATCCGCATCTTTGCTTGGAGGGTTGCAACTAATACTCTTGCCACCAAGAAAAACA
AATGGAAGAGAACGTTGCAAGTTGATGCCACCTGCAGCTTATGTGGAAATGGTGTCGAGGACGAACACCACGCGGCTATA
GCATGCACTAAAAGCACGGCCTTGAGGGCAGCAATGAGAGAAGTATGGAGGCTACCTGCTGAGAACAAACTAAGATTTAC
CGGTGATGATTGGCTGCAAGTTGCACTGGACACGGAAAGCGAGGAGATGCGCGCCAAACTGCTACTACTCCTGTGGCGTT
GCTCGCACCTCAGGGAGGACTGCATGCGTAATAATGCGAGAGAATCTATCAGGGGTTCAGTGCAGTTTTTAAAGCAGTAC
GAGGAAGGTCTGAGAAGTGCCGATGGGACCAACGACAGGCAGAAAGGACACATGGATTTGGGTGAGGGAGAGAGAAAGAA
CCGGCTGCTTCCCGCCACCCAAGGGGACAAGTAGAGAGCGCCGATACGTGGAACTGCCAAAATTAACTCCGACGCAGCAT
TCTGTGCAGCTACTGGGGAGAGTGCGGCGGGGGTGGTAGCCCGGGACCACAGAGGCCTGGTTTTCTTATCTGTCTGCAAA
AAGCTCCCGTTATGAAGCAGTGTTGAGGAAGCCGAGGCGCGTGCGGCCCTTGTCGGTCTTCAGACAATGAGTAGATACTT
CAATGGCGAGGTGGTGCTTGAGATGGACAACTGAAACATCACAGCTGAGCTGTCCTCTCAGCAACCGTCCCGGACCGCCT
GCTATGGCCTAATCATGGATATGAAAGAGGCGATGAAGGGTTTCACTGCATGCAGCGTCCAGTATGGTAACCGGAAGAAC
AACGAACTGGCGCATGAACTGGCGGCGCTGAACAGGAGTATGGGTGACAAAGTGTTGATTACTATACTAGTATTAAAAAC
GTTCTTATATTTTGGGACAGAGGGAGTAGTTTTTATCTACTCTGTCCTCAAAACAAAACAAAAAGGAGGAGCGAGCACTC
GCCGGTGAGCCT--------------CTTCTTGTCTGATCCGCGGCGATGGCCGCCGGTTTCTGCTTCGGCCGGTCACCG
CGCCATTGGAAGAGGCGCGCGTGGCGGTTGCCGCTTCGGCTGGTTACCGCGCCGCTGGAAGAGGCGCGCGTGGTGATCAC
CACGCTCCTGGACGCGGCCACTGCGCCGCAGGACGTGCCTCCGGTGTTGCTCACCATGCCCCTGGTGACGGTCCCGTTGA
ATTTTTTTGAATTTACTCTTTATAGAGGGTGCAGGGGCACTCACGAGCTGAAAAACCACTCTCAATGTTTGAAAGGCACA
CGTACGT-ACTCTTGGCTGATTCCGTGAGATCGATCATTGTCACGTCCGACAAGAGATCCGATCCATCTCGAAACCTGAG
TAGTACATCGAGTCGGTCTCTTGTTGCC------TTGTCAGA-CCTTTACATACGGGAGCACCCAGGTGG-CCAGAACCA
AATCGATCCAAGCTTACGATCAAGATCAAGAGTCGACGAGATCCAGGCGATCG------------AGCAGGAACCATGGC
T---TCGACGGCGGCGGACGCAAGCAGCAGCGGC---------GAGGTGGCTGCCATGGGCGACAAGAGCAACAAGATGT
TCACGCTGATCAGCTCCGACGGCGAGAGCTTCGAGGTCACGGAGGAGGTGGGCAAGATGTCGCAGACCATCAAGCACATG
ATCGAGGACGGCTGCGCCGACAACGGGATCCCCCTCCCCAACGTCCCCGCCAAGACCCTCAGCAAGGTCATCGAGTACTG
CAACAAGCACGTCGTCGCCGCCGCCGCCGG------CGACGACGACAACAAC----------------------------
--------------------------GCCAGCGCCGGCGAGAAGGAGGACCTGAAGAGCTTCGACGCCAAGTTCATCGCC
GTGGACCAGGCGACGCTGTTCGACCTCATCCTCGCCGCCAACTACCTGGACGTCAAGGGGCTCCTGGACCTGAGCTGCCA
GACGGCGGCCGACATGGTCAAGGGCCAGCCGGTCGAGGGCATACGCAAGATGTTCAACCTCGAGAACGACTTCACGCCGG
AGGAGGAGGCGGAGATCAGAAGGGAGAACCCCTGGGCGTTTGATCTTTGAAGCTGTATAAGATTTCGTAGGTTTTCTTGC
TCATAAATTAGTAACGGATGATTAGGCTGGTTTCTTTACTTGGTCGTTTGGAGCGGTGAAAA------------------
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>chr5A_673
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---------------------------------------------------------------------GTGGCGCTCAC
CACGCTCCTGGTGACGGCCTTGGCGCCGC------------------------------------------------TGA
ATTTTTTTGAATTTACTCTATGGTGTAGGGGTAT------CCGGGAGCTGAAATACCGTTCTCAGTGTTTGAAAGGCA--
--TTACACACTCTTGACTGATTCCGTGAGATCGATCATTGTCGCGTCCGAGAAGAGATCCGATCCATCTGGAAACCTGAG
TAGTACATCGAGTCGGTCTCTTGTTGCC------TTGTCTGGCCCTTTACATACCGGAGCACCCAGGTGG-CCTGAACCA
AATCGATCCAAGCTTACGATCAAGATCAAGAGTCGACGAGATCCAAGC----------------AAGCAGGAACCATGGC
T---TCGACGGCGGCGGACGCAGGCAGCAACGGC---------GAGGTGGTTGCCGTGGGCGACAAGAGCAACAAGATGT
TCACGCTGATCAGCTCCGACGGCGAGAGCTTCGAGGTCACGGAGGAGGTGGGCAAGATGTCGCAGACCATCAAACACATG
ATCGAGGACGGCTGCGCCGACAACGGGATCCCCCTCCCCAACGTCCCCGCCAAGACCCTCAGCAAGGTCATCGAGTACTG
CAACAAGCACGTCGTCGCTGCCGCTGCCGCTGCCGACGACGACAACAACAAC----------------------------
--------------------------GCCAGCGCCGGCGCGAAGGAGGACCTGAAGAGCTTCGACGCCAAGTTCATCGCC
GTGGACCAGGCGACGCTGTTCGACCTCATCCTCGCCGCCAACTACCTGGACGTCAAGGGGCTCCTGGACCTGAGTTGCCA
GACGGCGGCTGACATGGTCAAGGGCCAGCCGGTCGAGGGCATACGCAAGATGTTCAACCTCGAGAACGACTTCACGCCGG
AGGAAGAGGCGGAGATCAGAAGGGAGAACCCCTGGGCGTTTGATCTTTGAAGCTGTATAAGATTTCGTAGGTTTTCTTGC
TTATGAATTAGTAATGGATGATTAGGCTGGTTTGTTTACTTGGTGGTTTGGAGCGGTGAAAAACTATACTCCTATCTACT
---AATAGTGTACTCCTTACTATATTTATT--------------------------------------------------
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>chr7A_845
GATCG---------------------------------------------------------------------------
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-------------------------------------------------------------ATCGATCTCGGAACCTGAC
TAACATATCGATTCGGTCTCTCGCTTCTTGCCTGTTGTGTGACCCTTTAAATATGGGAGCACCGAGCCCAACCTGAACCA
AATCGATCCAAGCTTACGAGCTTTCCCTTCCCGATCG--------AGGAGAAATCAAGCAAGCGAATCAAGAACCATGGC
TGATGCGACGCCAGCGGAAGCAAGCAGCAGCGGC---------GAG------GCCGCGGGCGAGAAGAGCAATAAGAAGA
TCACGCTGATCAGCTCCGACGGCGAGAGCTTCGAGGTCACGGCGGAGGCGGCGGCCATGTCGCAGACCATCCACCACATG
ATGGAGGACAACTGCGTCGAGAACGGCATCCCGCTGCCCAACGTGCCCTCCAAGATCCTCTCCAAGGTCATCGAGTACTG
CAACAAGCACGTCT------------------------------------------------------------------
---------------------------------CCAGCGGCGAGCAGGACCTCAAGAGCTTCGACGCCAGCTTCATCAAC
GTCGACCAGGACACGCTATACGACCTCATCCTCGCCGCCAACTATCTGGACGTCAAGGGGCTCCTGGAACTCTGCCTGCA
GACGGTGGCCGACATGATCAAGGGCAAGACGGTCGAGGAGATACGCAAGACGTTCAACATCAAGTGCGACTTCTCGCCAG
AGGAGGAGGCCGAGATAAAAAAGGAGAACCAATGGGC-------------------------------------------
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>chr5B_976
GAAGA---------------------------------------------------------------------------
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--------------------------------GATCG--------AGC----------------AAGCAGGAACCATGGC
T---GCGACGCCGGCGGACGCAAGCAGCAGCAGCAGCAGCAGCGAGGCCGTGGTGGGCGGCGAGAAGAGCAACAAGATGA
TCACGCTGATCAGCTCCGACGGCGAGAGCTTCGAAGCCACGGAGGAGGCGGCGAAGATGTCGGTGACCATCAAGCACATG
ATCGAGGACGGCTGCGCCGACGACGGGATCCCCCTCCCCAACGTCCCCGCCAAGATCCTCTCCATGGTCATCGAGTACTG
CAACAAGCACG---------CCGCCGACGCCGCCGCCGACGACACCAACAAGCACGTCGCCGACCCCGCCGACGCCGACG
AGGACGACGACAATAACAACAACAATGCCAGCGCCGGCGAGAAGGAGGACCTGAAGAGCTTCGACGCCAGCTTGGTCGCC
GTCGACCAGGCCATGCTGTTCGACATCATCCTCGCCGCCAACTTTCTGAGCATCAAGGGGCTCCTGGACCTCGCCTGCCA
GAAGGTGGCCGACGACATCAAGGACAAGTCGGTTGAGGAGGTGCGCGAGATTTTCAAGATCGAAAACGACTTCACAAAGG
AGGAGGAGGAGGCCGTCAGAAAGGAAAATGCCTGGGC-------------------------------------------
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>SNPs
-----------SSSS--------------------------------S-----------------S---S-----S----
--S-------------SSSS----------------------S-------S-----S---------------S-------
------------------S---------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----S-----------S-----------------------------------S-----------------SS--------
----------------------------------------------------------------------S-S-S-----
----------SS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SSSSSSSS-SSSSSSS
------------SS-----------------------------------------------S----------------SS
--SSSSSS-SSS-SS-SSS-S-----------------------------------------------------------
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---------------------------------------------------------------S----------------
---------SSSSSSSSSSSSSSSSS--S-------------S--S--------------S-------------S-----
-----S----------------------------------S---S------S----------------------------
-----S-----------S---------S---------------------------------------------------S
-S-----S---------S--S--------S-------------S------------------------------------
--------------------------------S-----------------------------------------------
-----------------------------------------------------------S---S----------------
--------------------------------------------------------------------S-----------
-----------------S----------------------------------------------S---------------
-----------------------------------S--------------------------------------------
--------------------------------------------------S-----------------------------
-----------------S--------------------------------------------------------------
----------------------------------------------------------------------------S---
-----------------------------------------------S--------------------------------
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------------------------------------------------------------------S-------------
S-S-------------------------S-----------S---S-----S-----------S----SSSSSSSSS-SSS
SSS-------------S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_579
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-------------------------------------------------------------------------------G
CGAAAACAACGGAGACACC-------------------------------------------------------------
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>reverse_4533
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----------------------------------------------------GGCGCTCACACACTTTTGTT--------
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