>input_sequence_77327
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----------------------------------------------------------------ATGGCGGCCGCGGGGT
GGTTTCTAGCCGCCGGAGCCATCGTCATGGCCACCCTGCTGTCAGGCTGCGCCCTG---ACGGCCCCCGCGGCCGGCATG
CCCACGCCCACGCCGCCGTCGTCCTCCTCGCTGGATTGCGGCACGCTGACGTCGCTGCTGACGGGCTGCGCGGCTTTCGT
CACGCGCGGCACGAGCGCGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTCG
CGGCGGACTCGCCGGACAACTGGCGGTCGGTGTGCCGCTGCATGGCGGGGCTCGTCAGGCGGTACTGGTCCAACGCGTCC
GCCATCGCGCTGCTGCCGGGGCTCTGCGGCGTCTCGCCGGTGTCCACCGCTCACGCGTTCACCTACTGCACAAGGTAGAC
GGAAAATGCTAGCTTGAGTTCGTTCG----TTTTTGGTCACCACTCACTCAGGAGCAGATGACAATCGTTCTTTTCTTTG
AGGCTAATGGTAAGCTAATTCCCTTGCAGCATCCCCTGA-----------------------------------------
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>chr5A_1_TraesCS5A01G516700
TTAAATATATGTGCCATTCAAATAAAATGTTCACGTGTTTCAGAAAATGTTCATAACATATTTAAACATTTATACAATGC
GAAACAAAATGTTTGTGTACATTTTAAGAAAAAACATACCATTCCAAAAATGTTCAACATTTACTAAAAAAAATCTTCAA
ACATGTATTTGAAAAAAAATGTTGAGTTACGGGCTGTTTCCACGGACATGGCGTTACAGACAGATGTGTCCCCCCCCCCT
CCCCCCTCTCCCCCCAGGGTGGGGATCCCTTCCGTCGAAGTAGGTGCCACCTCTCTCTGTAGCCTTTTATTCGTAAAAAA
GTGCCAGTAAGCTTAGCATTGTTCTTGAAAAAAATGTTTATTATACATTTTTTAAATATATTATGTATGTACACTGAAAA
AGTACAGTGTGTATTGAAAAAAGGTGACATGTATTTGAA-AAAAAAACAAATTACAACTTAAAGTACATACTCTTAATT-
---GCGAATCAACCTGAGATTGGATGGTTAGAGGGACAGTGGTATCCCCAGTCAACCGAGGCTCAAGTCCTGGTGCTCGC
ATTATTCCTGGATTTATTTCAGAATTTTCGGCGATGCGCTTTTAGTGGGAGGAGACGTTCCCGTCGACGG----------
----TGACTTCGTAAATTTCAAGATGACATGCCGGCTCAGTCTCTCGGAGGTGCTCATAGGAGTAGGGTATGTGTGTGTG
TGTTCATAGGGGTGAGTGTATACGGGTATGTGTGAGCACTTGCGTCTGCCCTGATGTTAAAAAAAAAGTATGCTCTTAAT
TACATGCATGTCTATATGTTTGGAAGACGTTTCTAATTGGTGTCCCCTGAAGTGGTTAGCTCATCCTGCCCTCGTGGACA
TGTACGTAACCACGATGACGTACGCATGCGACCCACACGAAACAAGCACCGCAAGAACCTCCACCTCCATCTACTCTTCA
GTCAGCCACGCCACAGTCCCCCAAGGCGACACTGATCGATCGATCCAGCG-----ACTAGGGCCATGGCGGCCGCGGGGT
GGTTTCTAGCCGCCGGAGCCATCGTCATGGCCACCCTGCTGTCAGGCTGCGCCCTG---ACGGCCCCCGCGGCCGGCATG
CCCACGCCCACGCCGCCGTCGTCCTCCTCGCTGGATTGCGGCACGCTGACGTCGCTGCTGACGGGCTGCGCGGCTTTCGT
CACGCGCGGCACGAGCGCGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTCG
CGGCGGACTCGCCGGACAACTGGCGGTCGGTGTGCCGCTGCATGGCGGGGCTCGTCAGGCGGTACTGGTCCAACGCGTCC
GCCATCGCGCTGCTGCCGGGGCTCTGCGGCGTCTCGCCGGTGTCCACCGCTCACGCGTTCACCTACTGCACAAGGTAGAC
GGAAAATGCTAGCTTGAGTTCGTTCG----TTTTTGGTCACCACTCACTCAGGAGCAGATGACAATCGTTCTTTTCTTTG
AGGCTAATGGTAAGCTAATTCCCTTGCAGCATCCCCTGACGGTT--------CTCAGCCTCGGCAAGGCGACCGACAATT
TTAAGAGCATGCAGCTTGTTTCAGTTTGAAGTTATCAATTTTGTTCTTTGCTAGTAGTAGAGTAATAGTGATCTTGCTTT
GCTACCGGCCTGTTCAATTGGGTGTTGCTCTTGTTGTTAGGAATAATAATCTTCGGTTGTAATGAGTTAAGAATCTATGT
GATATAAGTAGAGTCCAGTAGTAGCAGGAGCTGGCTTGCACTCCGATGGCCAAGTGTGATACTAGTTAGTTCGTGTGGAT
GTGGGTAAGTGGGTTGTGCAGTTTTCGCCGTCGCGTGGGGATGGCCGGCAAGTTGAGGGTTTACCGGGTGCGGAGGAGCG
TCAGTGCGGCAGCGGGGCTAGCCTAGTGCACAAGTGCGGCTCGTCTCTCGGTGAGAGGCAGCGCCTTTGCAGCGGATGTC
ACGGTGTTCAGCGCCTTTGCAGCGGATGCGATCTAGGCGTGTCTCCTTGCTCCTCTTCTACCTGGCCACTCTTTTGGAAT
GGAATATTAGGCAAATTCATGATTAATTCTGGTAAATAATGCATGATTATAACAGAAATTAGCATGTAAAAATCTGGCAT
ACAAGAATGATAGAAAAACATGCACCGTGACATCACACATATGACAACAACCACAATTTGACACATGAACAGATCACGAC
GCACGTACTGTTCGTTAATAGGCGTAGTTGCTGCCGGGGCGACGTTGTTGATGATGATGTTGGTGACGACTTGATGCGGA
CTGCGTTGAAGACGATGATGAATAGCGCCGCCTGACTTGAACGGAAGGCGACCTGTGGTGACAAACTTGAACAGTTGTGC
AGTGCGCTTTCCAAAACCTAATTTGTCCTCTCTGAATGCAGGATCACATGGGCGAACAGTTTCGAAGACCTGCCCTCCTA
CACGTAGGTGCACACTGGCCTTTCGGATGGAGTAAAATATGATGGCGGTGCAAGTAGAGTAAGCAGCATATATATGAGGA
CCAAGGC
>chr4D_371
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--------------------------------------------------TTCAAATATATTACGTATGCACACGGAAAA
AGTACAGCGTGTATTGAAAAAAGGCAACATGTATTTGAAGAAAAGAACAAATTACGACTTACATACCAGTATGCTCTACA
TACGCGAACCAATCTGTAGTTGGATGATTAGAGGGACAGTGGTATCCCTAGCCTACCAGGGTTCAAGTCCTGGTGCTCGC
ATTATTCCTGAATTTATTTCAGGATTTCCGGCGATGCGCTTTCAATCAGAGGAGATGTTCCCGTCAACGACGAGGCGCCT
ACGATGACTTCGTAAATCTCAAGATGACATGCCGACTCAGTCTCTCAAATGTGCTCATAGGGATAGGATGTGCATGTATG
CGTTCATA-GGGTGAATGTATGCGCGTATGTATGAGCGCTTACGTCTATACTG-TGTTAAAAAAAAAGT-----------
---ATGCATGTCTATATGTTTGGAAGACGTTTCTAATTGGTGCCCCCTGAAGTGGTTAGCTCATCCTGCCATCGTGGACA
TGTACGTAACCAAGATGACGTACGCATGCGACGCGCACGAAACAAACACCGCAAAAACCTCCACCTCCATCTACTCTGAG
GA-AGTCACGCCACAAT-CCCCAAGGCGACACTGATCAATCGATTCAGCGCCTAGACTAGGGCCATGGCGGCCGCGGGGT
GGTTTCTAGCCGCCGGAGCCATCGTCACGGCCACCCTGCTGTCAGGCTGCGCCCTG---GCGGCGCCCGCGGCTGG----
--CACGCCCACGCCGCCGTCGTCCTCCTCGCTGGACTGTGACACGGTGACGTCGCTGCTGACGGGCTGCGCGACTTTCGT
CACGCGCGGCCAGAGCGTGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTAG
CGGCGGACTCGCCGGACAACTGGCGCTCCGTGTGCCGCTGCATGGCTGGGCTCGTCCGGCGGTACTGGTCCAACGCGTCC
GCCATCGCGCTGCTGCCGGGGCTCTGCGGCGTCTCGCCGGTGGCCACCGCTCACGCGGTCACCTACTGCAACAGGTACAA
GGAAAATGCTTC----AGTTCGTTCG----TTTTTGGTCGCCACTCACTCACAAGCAGATGAGAAATTTTCTTTGATTTG
AGGCTAAAAGATTAGTAATTCCCTTGCAGCATCCCTTGACAGTTGACGTGCGCTCAGCCTCGGCAAGGCAACCGACAGTT
TCAAGGGCATGCAACTTGCTTCAGTTTGGAGTTCTCAATTTTGTTCTT--------------------------------
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>chr4B_781
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-------------------------------------------------------------------------------T
TACATGCATGTCTATATGTTTGGAAGACGTTTCTAATTGGTGTCCCCTGAAGTGGTTAGCTCATCCTGCGCTCGTGGACA
TGTACGTAACCACGATGACGTACGCATGCGACGCACACGAAACAAGCACCGCAAAAACCTCCACCTCCATCTACACTTCA
GCCAGTCACGCCACACTG------------ACCGACCGATCGATCCAGCG-----ACGAGGGACATGGCGGCCGTGGGGT
GGTTTCTAGCCGCCGGAGCCATCGTCATGGCCACCCTGCTGTCAGGCTCCGCCCTGCTGACGGCGCCCGCGGCCGGCATG
CCCACGCCAACGCCGCCGTCGTCCTCGTCGCTGGACTGCGGCACGGTGACGTCGCTGCTGACGGGCTGCGCGGCTTTCGT
CACGGGCGGCACGAGCGCGGCGCCCCTGCCGGCCCCGGGCACGCCGTGCTGCGAGGGGGTGGACGGCCTGTACGCCGTCG
CGGCGGACTCGCCGGACAACTGGCGGTCCGTGTGCCGCTGCATGGCCGGGCTCGTCCGGCGGTACTGGTCCAACGCGTCC
GCCATCGCGCTGCTGCCGGGGCTCTGCGGCGTCTCGCCGGTGTCCACCGCTCACGCGGTCACCTACTGCACAAGGTAGAC
GCAAAATGCTTC----AGTTCGTTCGTTCCTTTTTGGTCGCCACTCACTCACAAGCAGATGACAAATTTTCTTTGATTTG
AGGCTAAAAGATTAGTAATTCCCTTGCAGCATCCCTTGACAGTTGACGTGCGCTCAGCCTCG-CAAGGCAACCGACGATT
TCAGGGGCATGCAGCTTGCTTCAGTTTGGAGTTCTCAGTTTTGTTCTT--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S-----S----S-----
-------S----------------SS------------------S----------S-----S-SSS--SSS-SS-SSSS-
--------S---S---SSS-------S---------------------S--S-S---SS--S------------------
----------S-----------S----S--------------S-S-SS-------S---------S---S----------
-----------------S----------------S-----------SS-S-----------SS----S-S--SS---S--
S-------S------S-----S--S------S-----S---S-----SSS---S---------------SSSSSSSSSS-
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--------------------------------S---------------------S-------------------------
-S---S---------S-S--------------------------------------------------------------
----------------------------------------------------------------S---------------
-----------------------------------S---------S----------------------------------
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----------------------------S-----------------S---------S-----------------------
---------------------------------------------------------S----------------------
----------SSSSSS-----------------------S-----------SS------------SSS------SS----
-------SS-SSSSS--------------------S----S----------------------------S----------
-S---S------------S---------S----S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_216
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------------------------------------TTTCCACGGACATGGCGTTA------------------------
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>reverse_1679
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------------------------------------------------------------------------------TT
GCTACCGGCCTGTTCAAT--------------------------------------------------------------
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