>input_sequence_77307
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ATGGCT
CTCGTCGTGCTCGCCGCCGTGTCCTCTGACGTCCTTCCCGTCGCCGACGCCGACGATGGCCTCTTCTCCAGGACGTGCAA
GAAGAGCAAGACCCCCGCGATCTGCGTGGCCATGCTGAGAGCCGACCGAAGGACCGACGGCGCCATGAACCTGTACGGCC
TCGCCAGCAACGCGCTGCTGATCGCAATCGACACTGTCTACAACAACACTAGGGTAATCGTCGACT---TGTTCAAGGGC
AAAGAGGGCACACCGGAGGGGGGAGCGCTGGATGTTTGCAACCAGGCCTATCTCGAAGCCGACAACGACCTTGAGCTCCA
AGCGCGCGTTGCCCTCGACTTTTTGGACTATGCCGGCGCGTCGAATGTCATCTTGCTCGCGAAGGACGCCGGTGATATGT
GTGAGGACGCGTTCAAGGCGATCAACAAGAAGTCCCCCCTGACCGACATGGATCGCCAGATGACGGAGCGCTGTGGTGTC
ACGGCCGACCTCATGGATCTGCTTGCCTCCAAGCGATCGGAATAA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3B_1_TraesCS3B01G008300
GCATTTTTTGAATCGATGAAC-TTTTTTTAAA-TTGGGGAACAAAATTAAAAAAACAAA-TATTTATTATTATTATTGTG
AACATTTTTTAAAATTTCATGGAC--TTTT-TTTTTCAGATTCCCGAATATGTTTTGAATACAAAATTGTTTTTTT-CAA
AATCATGAACATGATTTTATTTCTCGACCATTTT-TTACAAATTGT-GATT--TTTTTTATAATTTTGCGAACATTTTTG
CAAAACCACCAACA-TGTTTTGAA-CTGCAAACTTTTTATGTTTTTCTAAACATTTTTGAATTCAAATATATTTTATGTT
TTTTTATCAAACTT-AT--TT--TTT-GAAAACTCGCAACTTTTAGAATATTAAAATTCGGAATTAATTTAAAGAGGAAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAAAGAAAAAAGAAAAATG--AAAAAAAA-CAGGGGAGTGAAGCCCCGCACA
TGGGCCGGCCCATGAACGCATACATGAG---TAGGACATGTGTTAGAAAAGAAAGATAAAAA-TTGTGGAAGTTGGGGAT
CGAACCCTGGTCTCGCCACTAAAAAATCAACTGGCCAACCACTCTGCTGCTAC-CGTTCTGCGACCTGTATTCGTCGC-G
CCTCTATAAAACAACCAAGGAGGCGTCG-ATTTTTGCCCGAAAAATCAAATCGTTTTTCCACTTACGGGTGGCATTGGTG
GGTAATTTTAACCAACTTGAACGATAATT-TTAATGACGGACGACCAGAAGCGATAGCCACTTTATTAATATAGGTAAAG
AGGTAAAGAGGTAAAGATAAAGAGGTAAAGATAAAGATAGATATAGATATAGATATAAATTTACATAGTGTAGAAAAAGA
ATAAATATAGCACAATTAAGGCAACCTGT--CTTGCGCGGCG--TTTTATACAGAGAAGAAAGCGTCGCCATGTATATTG
TACCAACACAAAAGCAACACCTAGCTAAGTGCAAAGCACAAAAACCAATAGCGAGCACCGCAGCAACCGTAGCAATGGCT
CTCGTCGTGCTCGCCGCCGTGTCCTCTGACGTCCTTCCCGTCGCCGACGCCGACGATGGCCTCTTCTCCAGGACGTGCAA
GAAGAGCAAGACCCCCGCGATCTGCGTGGCCATGCTGAGAGCCGACCGAAGGACCGACGGCGCCATGAACCTGTACGGCC
TCGCCAGCAACGCGCTGCTGATCGCAATCGACACTGTCTACAACAACACTAGGGTAATCGTCGACT---TGTTCAAGGGC
AAAGAGGGCACACCGGAGGGGGGAGCGCTGGATGTTTGCAACCAGGCCTATCTCGAAGCCGACAACGACCTTGAGCTCCA
AGCGCGCGTTGCCCTCGACTTTTTGGACTATGCCGGCGCGTCGAATGTCATCTTGCTCGCGAAGGACGCCGGTGATATGT
GTGAGGACGCGTTCAAGGCGATCAACAAGAAGTCCCCCCTGACCGACATGGATCGCCAGATGACGGAGCGCTGTGGTGTC
ACGGCCGACCTCATGGATCTGCTTGCCTCCAAGCGATCGGAATAATTCTCGGCTTGTTTTTCTATGCATGTTGCTGTCAA
TAAATAATCGGTTGTGTCTGGACATGCTATGGTGATAATGCAGTTTAAGAGTTACATAATTTTTCATCCCCTGCTTCTCT
ACAGCGAAACATCTCTTCCCTCAAGTTCCTTTCTCCTTTTTTTGCGAGAATATCTACTCCTGTCCTGGACTATGAGCAAG
TGGCTAAGG-TTAGCCTGCATGATAAGGCAGCCAAGCGCCCACAGGACAGACAACACAGTTAACCGCAGTAGTAGCTAGC
AGCACACATCACAGCAACGATGGCTATCTCATTTCTGACCCCACGTCCCTCTCGGCGTCCACTCCCGGCCCGAAAAAA-A
AACAGATTTCGGCCGAATTTCGGCCATCTCGGCCTGAGGCGAAATCTATCTTTGGCCGAAATAGATCAAACTTGGCAAAT
TTTGGTCAAATTCCGGCCGAAATTTTTGAAAATGGCCGAAATTCGGCCATCTCGGCCAGGGGCGAAAAAGTTCTCAAACC
AAAAACCAAAACGCTGCTCCCGGGCACCACTCGACAGATAAATTTGGTGTATTTAGGGCATTCCTAACCGATCTCTTAAA
AATAATGGAGTATCTGGTGGAGTA--------------------------ACTAAGTTTTGGCCGGACCTAGCCGATCCC
CTATATATAACGGAGCAAATTTCCGGTTTTTTCTTCTAAACTTTGCAATTCTACTATAAATTGCAACTACACATTTGCAC
ACTTGTGGAAACTAAACATGAATTTGAATGTTCAAGAAAATCACGAATGGTCGTTGGATCGTTG-AGTGGCCTTTGTACT
AACACTTCCACCCCGCAAGACAATTCTTTCATGTCCAGTGCATATAGTCAAGTGATTCAAGCATCCCCGGCCATCCTCTT
GCTTCACCCTTAGTCATCAGTCTTTAGGTGTCTTCCCCGGTTGGTGCTCTTAAGTACTCCAGGTCAAAGACAACGATCAC
TGCTTTAGTGAACCTTCGAACAATCTCCAAAATT
>chr3B_2
-CATTTTTTGAATCTATGAAC-TTTTTTTAAAATTGGGGAACAAAACTAAAAAAACAAA-TATTTATTATTATTATTGTG
AACATTTTCTAAAATTTGATGGACA---AT-TTTTTCAGATTCCCGAATATGTTTTGAGTACACGATCA-TTTTTT-CAA
AATCATGAACATGATTTTATTTCCCGACCATTTT-GTACAAATTGT-GATT--TTTTTTATAATTTTGCAAATATTTTTG
CAAAACCACCAACATTTTTTTGAATCTGCAAACTTTTTGTAATTTTCTAAATATTTTTGAATTCACATATATTTTATGTT
TTTTTGTCAAACTT-AT--TT--TTTTGAAAACTTGAAACTTTTAGAATATTAAAATCCAGAATTAATTT-------AAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAGACAAAAAAGTAAAATG--AAAAAAAA-CAGGAGAGTGAAGCCCCGCACA
TGGGCCGGCCCAGGAACACATACATGATGAATAGGACGTGCGTGAGAAAAGAAAGATAAAAA-TTGTGGTAGTTGGGTAT
CGAACACTAGTCTCGCCGCTACAAGAGCGGTCAGCCAACCACTCTGCTGCTAGTCGTTCTATGGCCTTTACTCGTTGC-G
CCCCTATAAGACAATGAAAGAGGCGTCGATTTTTGATCCGAAAAATCGAATCGTTTTTCCACTTACGGGTGGCATTGGTG
GGTAATTTTAACCAACTTGAAGGGTAATT-TTAGTGACGGACGACCAGAAGCGATAACCGCTTTATTAGTA---------
-----------------------GGTAAAGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3B_2
-CATTTTCTGAAGCGATGAACTTTTTTTAAAA-TTGGGGAACAAAATTAAGAAAACAAA-TATTTATTATTATTATTTTG
AACATTTTCTAAAATTTCATGGACA---TT-TTTTTCAGATTCCCGAATATGTTTTGAATACACGATCA--TTTTTTCAA
AACCATGAACATGATTTTATTTCCCGACCATTTC-TTACAAACTGTGG--T--TTTTTAATAATTTTGCAAACAGTTTTG
CAAAACCACCAACA-TTTTTTGAATCTGCAAACTTATTATGATTTTCTAAACATTTTTGAATTCACATATATTT-ATGAT
TTTTTATCAAACTT-TT--TT--TTT-GAAAACTCGCAACTTTTAGAATACTAAACTCCGGAATTAATTTAAAGTAGAAA
GAAAAAAGAAAACAGAATGAGAAAAGAAAAGACAAAAAAGTAAAAT---AAAAAAAA-TAGAAGAGTGAAGCCCCACACA
TGGGCCGGCC-ATGAACGAATACATGAG---TAGGACATGCGTGAGAAAAGAAAGATGAAAA-TTGTGGAAGTTGGGGAT
TGAACCCTGGTGTCGCCGCTAAAAGAGCAATC-ACCAACCATTCTTCTGCTTGTCGTTCTAGGACTTATACTCATCGCGT
CCCCCTAAAGATAAATAAGGAGGAGTTGATTTTTGGTCCGAAAAATCGAATCGTTTTTCCACTTACGGGTAGCATTGGTG
GGTAATTTTAACCAACTTGAAAGGTAATT-TTAATGACGGACGACCAGAAGCGATAGCCGCTTTATTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3A_2
-CATTTTTTGAATCGATGAACTTTCTTTTAAA-TTAGGGAACAAAATTAAAAAAAACAACTATTTATTATTATTATTGTG
AACATTTTCTAAAATTTCAAGGACATTTTT-TTTTTCAGATTCCCGAATATGTTTTGAATACATGTTCA-TTTTTT-CAA
AATCATGAACATGATTTTATTTCCCGACCATTTT-TTACAAATTGT-G--T--TTTTTTATAATTTTGCGAACAGTTTTG
CAAAACCACCAACA-TTTTTTGAATCTGCAAACTTTTAATGATTTTCTAAACATGTTTGAATTCACATATATTTTCTGTT
TTTT-ATCAGATTTATTTCTT--TTTTTT-AACTCGCAACTTTTAGAATATTAAAATCCATAATTAATTTAAAGATGAAA
GAAGAAAGAAAACATAATGAGAAAAGAAAAGACAAAAAAGTAAAAT---GAAAAAACTCAGGGGAGTGAAGCCCCACACA
TGGGCCGGCCCATGAACGCATACATGAG---TAGGACATGTGTGAGAAAAGAAAGATAAAAA-TTGTGGAAGTTGGGGAT
CGAACCCTGGTCTCGCCGATAAAAGAGCGATCGGACAACCACTCCGCTGCTCCTCATTTTGTGACCTCTACTCGTCGC-A
CCCGTATAAAATAACGAATGAGGTGACG-TTTTTGGTCCAAAAAAATGAATCGTTTTTCCACTTATGGGTGGCATTGGTG
GGTAATTTTAACCAACTTAAAGGGTAATT-TTAATGACGGACGACCAGAAGCGATAGCCGCTTTATTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3A_2
-CATTTTTTGAATCGATGAACTTTCTTTTAAA-TTAGGGAACAAAATTAAAAAAAACAACTATTTATTATTATTATTGTG
AACATTTTCTAAAATTTCAAGGAC--ATTT-TTTTTCAGATTCCCGAATATGTTTTGAATACACGTTCA--TTTTT-CAA
AATCATGAACATGATTTTATTTCCCAACCATTTT-TTACAAATTGT-G--T--TTTTTTATAATTTTGCGAACAATTTTG
CAAAACCATCAACA-TTTTTTGAATCTGCAAACTTTTAATGATTTTCTAAACATGTTTGAATTCACATATATTTTCTGTT
TTTT-ATCAGACTTATT--TCTCTTTTTT-AACTTGCAACTTTTAGAATATTAAAATCCAGAATTAATTTAAAGATGAAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAGACAGAAAAGTAAAAT---GAAAAAACTCAGGGGAGTGAAGCCCCACACA
TGGGCCGGCCCATGAACGCATACATGAG---TAGGACATGTGTGAGAAAAGAAAGATAAAAA-TTGTGGAAGTTGGGGAT
CGAACCCTGGTCTCGCCGATAAAAGAGCGATCGGACAACCACTCCGCTGCTCCTCATTTTGTGACCTCTACTCGTCGT-G
CCCGTATAAAATAACGAATGAGGTGACG-TTTTTGGTCCGAAAAAATGAATCGTTTTTCCACTTATGGGTGGCATTGGTG
GGTAATTTTAACCAACTTAAAGGGTAATT-TTAATGACGGACGACCAGAAGCGATAGCCGCTTTATTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr4B_2
-CATTTTTTGAATCTATGAAC-TTTTTTTAAAATTGGGGAACAAAACTAAAAAAACAAA-TATTTATTATTATTATTGTG
AACATTTTCTAAAATTTGATGGACA---GT-TTTTTCAGATTTCCGAATATGTTTTGAATGCACTATCA-TTTTTT-CAA
AATCATGAACATGATTTTATTTCCCGATCATTTT-GTACAAATTGT-GATT--TTTTTTATAATTTTGCGAACAGTTTTG
CAAAACCACCAACATTTTTTTGAATCTGCAAACTTTTTATAATTTTCTAAACATTTTTGAATTCACATATATTTTATGTT
TTTTTATCAAACTTATT--TT--TTT-AAAAACTCAAAACTTTTAAAATATTAAAATACGGAATTAATTT-------AAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAGACAAAAAAGTAAAAT---GAAAAAAA-CAGGGGAGTGAAGCCCCGCACA
TGGGCCGGCCCATGAACGCATACATGATGAATAGGACGTGCGTGAGAAAAGAAAGATTAAAA-TTGTGGAAGTTGGGGAT
CGAACCCTGGTGTCGCCGCTAGAAGAGCAGTCAACCAACCACTCTATTGGTAGTCGTTCTGTGGCCGTTACTCGTTGC-T
CCCCTATAAGACAATGAAAGAGGCGTCGATTTTTGATCCGAAAAATCGAATCGTTTTTCCATTTACGGGTGGCATTGGTG
GGTAATTTTAACCAACTTGAAGGATAATT-TTAGTGACGGACGACCAGAAGCGATAGCCACTTTATTAGTA---------
-----------------------GGTAAAGATAAAGATAAAGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr1B_2
-CATTTTTTGAATCGATGAAC-TTATTTTTAA-TTGCGGAACAAAACTAAAAAAGCAAA-TATTTATTATTATTATTGTG
AACATTTTCTAAAATTTCATGGACA---TC-TTTTTCAGATTCCTGAATATGTTTTCAATACACGATCATTTTTTT-CAA
AATCATGAACATGATTTTATTTCCCGACCATTTTTTTACAAATTGTGA--T--TTTTTTATAATTTTGCGAACAGTTTTG
CAAAACCACGAATA-TTTTTTGAATCTGCAAAATTTTTATGATTTTCTAAACATTTTTGAATTCACATATATTTTATGTT
TTTT-ATGAAACTTATC--TT--TTT-GAAAACTCGCAACTTTTAGAATATTAAAATCCGCAATTAATTT-------AAA
GAAGAAAGAAAACAAAATGAGAAAAGAAAAGATAAAAAAGTAAAAT----AAAAAAA-CAGGGGAGTGAAGCCCCGCACA
TGGGCCGGCCCATTAACGCATACATGAG---TAGGACATGCGTGAGAAAAGTAAGATAAAAA-TTGTGGAAGTTGGGGAT
---ACCCTGGTCTCGCCGCTAAAAGAGTGACCGACCAACCACTCTGCTGCTCGTCGTTCTGTGGCCTCTACTCGTCGC-G
CCCCTATAAAACAGCGATGGAGGCATCGATTTTTGGTCCGAAAAATCGAATCGTTTTTCCACTTACGGGTGGCATTGGTG
GGTAATTTTAACCAACTTGAAGGGTAA-T-TTAAAGACAGACGACTAGAAGCGATAGCCGCTTTATTAGTA---------
-----------------------GGTAAAGATGT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr6B_2
-CATTTTTTGAATCTATGAAC-TTTTTTTAAA-TTGGGGAACAAAACTAAAAAAACAAA-TATTTATTATTATTATTGTG
AACATTTTCTAAAATTTTATGGACA---TTGTTTTTCAGATTCCCGAATATGTTTCGAATACACGATCA-TTTTCT-CAA
AATCATGAACATGATTTTATTTCCTGACCATATT-TTACAAATTGT-GATT--TTTTTTATAATTTTGCGAACAGTTTTG
CAAAACCACCAACA-TTTTTTGAATCTGCAAATTTTTTAAGATTTTCTAAACATTTTTGAATTCACATATATTTTATGTT
TTT--ATCAAACTT-TA---T--TTT-GAAAACTCGAAACTTTTAGAATATTAAAATCCGGAATTAATTT-------AAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAGAAAAAAAAGTAAAATG--AAAAAAAA-CAGGGGAGTGAAGCCCCACACA
TGGGCCGGCCCATGAACGCATACATGATGAATAGGACGTGCATGAGAAAAGAAAGATAAAAA-TTGAGAAAGTCGGGGAT
CAAACCCTGGTCTCGCTGCTAGGAGAGTGATCGGCCAACCACTATGCTGCTAGTCATTTTGTAGTCTCTACTCGTTGC-G
CCCCTATAAGACAACGAAAGAGGCATCGATTTTTGGTCTGAAAAATCAAATCGTTTTTCCACTTACGGGTGGCATTGGTG
GGTAATTTTAA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr2B_3
--ATTTTTTGAATTGATGA--TTTTTTTTAAA-TTGGGGAACAAAATTAAAAAAATAAA-TATTTACTATTATTATTGTG
AACATTTTCTAAAATCTCATGGACA---TT-TTTTTCAGATTCCCGAATATGTTTTGAATACACGATCA-TTTTTT-CAA
AATCATGAACATGATTTTATTTCCCAACCATTTT-TTACAAATTGT-GATTTGTTTTTTATAATTCTGCGAACAGTTTTG
CAAAACCACCAACA-TTTTTTAAATCTGCAAACTTTTTATGATTTTCTAAACATTTTTGAATTCACATATATTTTATGTT
TTTT-ATCAAACTTATT--TT--TTT-GAAAACTCGCAACCTTTAGAATATTAAAATCCAGT-TTTATTTAAAGAAGAAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAGACAAAATAGTAAAATGAAAAAAAAAA-CAGGGGAGTGAAGCCCCGCACA
TGGGCCGGCCCATGAACGCATACATGAG---TAGGACATGGGTGAGAAAAGAAAGATAAAAAATTGTGAATGTTGGGGAT
CGAA-CCTGGTCTGGTCGCTAAAAGAGCAATCTTCCAACCACTCTGATGCTCATCGTTCTGTGGCCTCTTTGCATCGC-G
CCCCTATAAAGCAACGAAGAAGGCGTCGATTTTTGGTCCCAACAGTCGAATCGTTTTTCCACTTACGGGTGGCATTGGTG
GGTAATTTTAATCAACTTGAAGGGTAG-TTTTAATGACGGATGACCAGAAGCGATGACTGCTTTATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr1D_61
---------------------------------------------------------------TTATTATTATTATTGTG
AACCCTTTCTAAAATTTCATGGACA---TT-TTTTTCAGATTCCCGAATATGTTTTGAATACACGTTCA-TTTTTT-CAA
AATCATGAACATGATTTTATTTCC-GACCATTTT-TTACAAATTGT-GATT--TTTTTTATAATTTTGCGAACAGTTTTG
CAAAACCACCAACA-TTTTTTGAATCTGCAAACTTTTAATGATTTTCTAAACATGTTTGAATTCACATATATTTTATGTT
TTTT-ATCAAACTTATT--TT--TTCTTT-AACTCGCAACTTTTAGAATATTAAAATCCGGAATTAATTTAAAGAAGAAA
GAAGAAAGAAAACAGAATGAGAAAAGAAAAGACAAAAAAGTAAAAT----GAAAAAAATAGGGGGGTGAAGCCCCGCACA
TGGGCCGGCCCATGAACGCATACATGAG---TAGGACATGTGTGAGAAAAGAAAGACAACAA-TTGTGGAAGTTGGGGAT
CGAACCCTGGTCTCGCCGCTAAAAGAGCGATCGGCCAACCACTCTGCTGCTCATCGTAATGTGACCTCTACTCGTCGC-G
CCTCTATAAAACAACGAAGGAGGCGTC-ATTTTTGGTCCAAAAAAATGAATCGTTTTTCCACTTACGGGTGGCATTGGTT
GGTAATTTTAACCAACTTGGAGGGTAA-TTTTAATGACGGACGACCAGAAGCGATAGTCGCTTTATTAGTG---------
-----------------------GGTAAAGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3D_801
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATATATATATATATATATATATATATAGATT-ACACAGTGTAGAAAAGAA
ATAAATATAGCACAATTAAGGCAACCTGT--CCACGCGGCGTC--TTTATATAGAGAAGAAAGCGTCGCCATATATACTG
TACCAACACAACAGCAACGCCTAGCTAAGTGCAAAGCACAAACAGCAATGGCGAGCACGGCAACAACCGTAGCAATGGCT
ATCGTCGTGCTCGCCGCCGTGTCCTCTGACGTCCTTCCCGTCGCTGAAGCCGACGCCGGCCTCATCTCCAGGACGTGCAA
GAAGACCAAGACCCCCGCGATCTGCGTGGCCATGCTGCGCGCCGACCGAAGGACCGACGGTGCCATGAACCTGTACGGCC
TCGCCAGCAACGCGCTGTTGATCGCAATCGACACTGTCTACAACAACACTAGGGTAATCGTCGACT---TGTTCAAGGGC
AAAGAGGGCACACCGGAGGGGGGAGCGCTGGATGGTTGCAACCAAGCCTATCTCGAAGCCGACAACGACCTTGAGCTCCA
GGCGCGCCTTGCCCTTGACTTTTTGGACTATGCCGGTGCGTCGAAGGTCATCTTGCTCGCGAAGGACGCCGGTGATATGT
GTGAGGACGCGTTCAAGGCGATCAAGAAGATGTCCCCCCTAGCCGACATGGATCGCCAGATGACAGAGCGCTGTGGTGTC
ACCGCCGACCTCATGGATCTGCTTGCCTCCAAGCGATCGGAATAATTCTTGGCTTGTTTTTCTATGCATGTTGCTGTCAA
TAAATAATCGGTTGTGTCTGGACATGTTATGGTGATAATACAGTTTAAGAGTTACATAATTTTTCATCCCCTGCTTCTCT
GCAGCGAAACACCTCTTCCCTCAAGTTCTTGTCTTCC-TTTTTGCTAGAAGATCTACTCCTGTCTTGGACTATGAGCAAT
TGCCTAAGTTTTAGCCTTCATGATAAGGCAGTCAAGCGCCCGCAGGACATACAACACAGTTAAGCGCAGTAGTAGCTAGC
AGCACGCATCACAGCAACGATGACTATCTCATTTCTGACTGAACCT----------GTCCACTCCCCA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GGCACCACCCGGCAGATAAATCTGGTGTATTTAGGGCATTTCTAACCGATCTTCTAAA
AATAGTGGAGTATCTGGTGAAGTAAACTCTTAGTGAAGTATATTCACTCCACTAAATTTTGGCCGGACCTAGCCGATCCC
CTATATATAACAAAGTAAATTTCCGTTTTTTCC----AAACTTTGCAATTCTAGTATAAATTGCAACTACATATTAGCAC
AGTTATAGAAATTAAACATGAATTTGAATGTTCAAGCAAATCACGAACGATCGTTGGATCGTTGCAGTGGCCTTTGTACT
GACCCTTCTACCCTGCAGGACAATTCTACCATGTCCAGTGCATACAGTTAAGTGATCCAAGCATCCCTAGCCAT-CTCTT
GCTTCACCCTCACTCATCAGCCTCTGGGTGTCTTCCTCGGTTGCTGCTCTCAAGTACTCCGGACCAAAGACAGCGATCAC
TGCTTTAGTGAACCTTCGAACAACCTTCAAGATT
>chr3A_807
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATAGATATAGATATAGATATAAATT-ACACAGTATAGAAAAAGA
ATAAATGTAGCACAATTAAGGCATCCTGT--CCTGCGTGGCG--TCTTATATAGAGAAGAAAGCGTCGCCATGTATACTG
TACCAACACAACAGCAACGCCTAGCTAAGTGCAAAGCACAAACAGCAATGGCGAGCACGGCAACAACTGTAGCAATGGCT
CTCGTCGTGCTCGCAGCCGTGTCCTCTGACGTCCTTCCCGTCGCTGACGCCGGCGCCGGCCTCATCTCCAGGACGTGCAA
GAAGACCAAGACCCCCGCGATCTGCGTGGCCATGCTGCGCGCCGACCGAAGGACCGACGGCGCCATGAACCTGTACGGCC
TCGCCAGCAACGCGCTGCTGATCGCCATCGACACTGTCTACAACAACACTAGGGTAATCGTCGACTTGCTGTTCGAGGGC
AAAGAGGGCACGCCGGAGGAGGAAGCGCTGGCCGTTTGCAAGCAAGCCTATCTCGAAGCCGACAACGACCTTGAGCTCCA
AGCGCGCCTTGCCCTCGACTTTTTGGACTATGCCGGCGCGTCCAAGGTCATCTTGCTCGCCAAGGACGCCGGTGATATGT
GTGAGGACGCGTTCAAGGCGATCAAGAAGAAGTCCCCCCTGGCCGACTTGGATCGCCAGATGAGAGAGCGCTGTGGTGTC
ACCGCCGACCTCATGGATCTGCTTGCCTCCAAGCGATCGGAATAATTCTTGGCTCGTTTTTCTATGCATGTTGCTGTCAA
TAAATAAACGGTTGTGTCTGGACATGTTATGGTGATAA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3B_811
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATATAGATATAGATATAGATT-ACACG--GTAGAAAAAGA
ATAAATATAGCACAATTAAGGCAACCTGTGTCCTGCGTGGCGTCTTATATATAAAGAAGAAAGCGTCGCCATATATACCG
TACCAACACAACAGCAACGCCTAGCTAAGTGCAAAGCACAAACATCAATGGCGAGCACCGTAGCAACCGTAGCAATGGCT
CTTGTCATGCTCGCCGCCGTGTCCTCTGACATCCTTCCCGTCGTTGACGCCCACACCGGCCTCATCTCCAGGACGTGCAA
GAAGACCAAGACCCCCGCGATCTGCGTGGCCATGCTGAGAGCCGACCGAAGGACCGACGGCGCCATGAACCTGTACGGCC
TCGCCAGCAACGCGCTGCTGATCGCAATCGACACTGTCTACAACAACACTAGGGCAATCGTCGACT---TGTTCAAGGGC
AAAGAGGGCACACCGGAGGGGGGAGCGCTGGATGTTTGCAACCAGGCCTATCTCGAAGCCGACAACGACCTTGAGCTCCA
AGCGTGCGTTGCCCTCGACTTTTTGGACTATGCCGGCGCGTCGAAGGTCATCTTGCTCGCGAAGGACGCTGGTGATATGT
GTGAGGACGCGTTCAAGGCGATCAACAAGAAGTCCCCCCTGACCGACATGGATCGCCAGATGACGGAGCGCTGTGGTGTC
ACGGCCGACCTCATGGATCTGCTTGCCTCCAAGCGATCGGAATAATTCTCGGCTTGTTTTTCTATGCATGTTGCTGTCAA
TAAATAATCGGTTGTGTCTGGACATGCTATGGTGATAATGCAGTTTAAGAGTTACATAATTTTTCATCCCCTGCTTCTCT
ACATCGAAACATCTCTTCCCTCAAGTTCCTTTTTCCTTTTTTTGCGAGAATATCTACTCCTGTCCTGGACTATGAGCAAG
TGGCTAAGG-TTAGCCTGCATGATAAGGCAGCCAAGCGCCCACAGGACAGACAACACAGTTAACCGCAGTAGTAGCTAGC
AGCACACATCACAGCAACGATGGCTATCTCATTTCTGACCCCACGTCCCTCTCGGCGTCCACTCCCGGCCCGAAAAAAAA
AACAGATTTCGGCCGAATTTCGGCCATCTCGGCCTGAGGCGAAATCTATCTTTGGCCGAAATAGATCAAACTTGGCAAAT
TTTGGTCAAATTCCGGCCGAAATTTTTGAAAATGGCCGAAATTCGGCCATCTCGGCCAGGGGCGAAAAAGTTCTCAAACC
AAAAACCAAAACGCTGCTCCCGGGCACCACTCGACAGATAAATTTGGTGTATTTAGGGCATTCCTAACCGATCTCTTAAA
AATAATGGAGTATCTGGTGGAGTA--------------------------ACTAAGTTTTGGCCGGACCTAGCCGATCCC
CTATATATAACGGAGCAAATTTCCGTTTTTTTCTTCTAAACTTTGCAATTCTACTATAAATTGCAACTACACATTTGCAC
ACTTGTGGAAACTAAACATGAATTTGAATGTTCAAGAAAATCACGAATGGTCGTTGGATCGTTG-AGTGGCCTTTGTACT
AACACTTCCACCCCGCAAGACAATTCTTCCATGTCCAGTGCATATAGTCAAGTGATTCAAGCATCCCCCGCCATCCTCTT
GCTTCACCCTTAGTCATCAGTCTTTAGGTGTCTTCCCCAGTTGGTGCTCTTAAGTACTCCAGGTCAAAGACAACGATCAC
TGCTTTAGTGAACCTTCGAACAATCTCCAAAATT
>SNPs
S-------------------------------------------------------------------------------
--------S------------------------------------------------------SS--SS-----------
-----------------------S--------------------------------------------------------
----------------S------------------------S-----------------------S--------------
---------------------------------------------------------S-----------------S----
------------------------------S-S-------S---------------------------------------
-------------------------------------------S------------------------------------
-----------------S------S-S----S-----------------------------S-----S------------
---------------S-------------S----S-S-------------------------------------------
---------------------S----------------------------------------------S--SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S---S--------------
--------------------------------S----S-------------S-------------------------S--
-----------S------S-----------------------S-S----S------------------------------
--------------------------------------------S----------SS------S----------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------------
>forward_932
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TCTTGCGCGGCGTTTTATAC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2469
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGCCATCCTCTT
GCTTCACC------------------------------------------------------------------------
----------------------------------
