>input_sequence_77299
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------------------------------------------------------ATGAGGGACATGAGCGGC--------
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-----------------GACGCCGGCGGCATGGGAGCGATGCCGATGCCGCCACCGCCGGCCGACCACGCCGCCACGAAG
GCGGCGGCGCCGCACACAATGATGGGGATGATGCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGG
CTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACAGAGGCCC
TCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAGGACGGCGCCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACG
GCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGC
GGCAGTCGCCGGCCACGCCGTCGGGTTCCTCTTCGCGCGGAGCAGAGTGCGCACAGGCGCGGCGCGCGGGAATGTCACAT
CCCCTGAGCTCTGTGGCGTCCCGCCGTCGCACCCGTCCAAGCCTTAG---------------------------------
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>chr2A_1_TraesCS2A01G297000
TGTGGGGCCACGCCGTCAGTTCGACGTAATGGGCGTGCCCGGACGCCCTCGTATCCGCCCCATATTTGGGCTGAATATGG
GGGGTGCCGGTTAGCCCGGGCGTTTGAGGGCCGTTTGAGAGGTCCGCCTGAATCAAAAAATGTGACTGGATGGTTTGTCC
GGACATTTGAGACGAGTTTGGGAGGTCCGGTTGTAGATGCTCTGATGCTAATAATTCTTTAAAATTAGGTCAATACTAGT
ATGAACATGGAGTATGAACATGTCGTGACAGTGGCACACACAACAAGGAACAATAATGCGGTGGTGTGGCATTCAAAATA
TTCGAAATGGACCTGAAACCTAGGGTATGCACTATAGCTCTGCAGACTGCAGTGTTTGTTGCTTGCACAGGAAAACCCAT
TAAATACTCCCTGGTGAGTAGATTGAGATTCCATCAAATGAGAGAGCTTCCAGAGTTGGATCGGTGTCACTAGCGACGCC
ACCTGCGCGCGTGACTGGCAGGTTGGGCATGCTTTTCTCACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACC
AGTAGTCGGAGTCGGAATTTTGGCAGACGGAAACCAATACCACCGGTAGGGGTTGACAATACAGTAGCAGAACCTTAGCT
CTACCAAACTATCCTCGCCGCCTCAGATGAGATGCTGAGAAAATAATGCTGGGCCGAGCCAATCTGTGGCCGCTACGGCG
TACGTACTACTACAAAAC-GTCTCGATCGAGCGCGCGCGGCTGAGCAGACGACAAGCAACGGCGAC------------GC
CGGTCCCCTCCTCGGTTGCTCAGTGCAATCACGAGACGGGCGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCGCTGCC
CTGCGCTTCTCCTGATTTTAGTAAGTTTCCTCCGCGCCACCGGTCACGTTATATCTGCGCTACATCCCGCTGCCCCAGCG
CCTCCCCTTCCC-TGCTCTGCCCGCCTCGCTAGGAACCCAAGAAACATCCAGCAATGAGGGACATGAGCGGC--------
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-----------------GACGCCGGCGGCATGGGAGCGATGCCGATGCCGCCACCGCCGGCCGACCACGCCGCCACGAAG
GCGGCGGCGCCGCACACAATGATGGGGATGATGCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGG
CTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACAGAGGCCC
TCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAGGACGGCGCCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACG
GCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGC
GGCAGTCGCCGGCCACGCCGTCGGGTTCCTCTTCGCGCGGAGCAGAGTGCGCACAGGCGCGGCGCGCGGGAATGTCACAT
CCCCTGAGCTCTGTGGCGTCCCGCCGTCGCACCCGTCCAAGCCTTAGTCAGATTCCGGTGAAAGTTGCTTCTGTGATCTT
CTTGTACTAGCCCGGCCCTATCACTATGTCGGATCCAATGTGTACTGGTACCC-------CTAAATCCTACTACATTCCT
ACTCCTACTCCACAAGTCCAGATACTTGCTGAAACATGTGTTTGCATCTGTCTTATACAGCGACTAACCAGCAACCACTA
GTGATTTCGTTTTACGAAGGTGTCTATTTTGTTTCTCTCAACTATTGTCCATGTTTAGACTCCATCCTCGAATTCCCAAA
CTGATAAACTCTTCAAACTAAACTCCTCCATCAAATTATGCGTGCAGTTTTT------ATTATGTCCACGATGTAGGAGG
AAGAGCTTCCGATGCTCGCATACGCTA-----TTTTTTTACTAAAAGGTTGA-------ATCTATCTAATTTTTTTTCGG
GGA--TATCTATCTAT---TATATAATTGTACACTAAAACTAAGGTTTATCAACGGCTAATATTTTAGTAGATGTGAAAG
TAATGAAGTCAA--AAAAAAAGGCAAGTAATGCACGCAAAAAAAAACTCAGGCAACATAACTAGCAACTGTGTGTATTTT
ATATTGGGCAAGGTTAGGGCATCTCCAACTGTGACCCGCAAA-TTTCCTCCGCATTCGTCCATGGACACGGATGTGAGAG
GACGTCATCCAACCGTAGCCGTATACATCCAGTCTTTCTTAAATAAAAAATCAAGTCTGCACGATCAAATAGGCGCATGC
AGCACTAGTTTAAATTTAAAAGAAGTTCAAATATTACATCCCAACATTGTTCTCCCCTTTCGCCGCCCACTGATACTTAA
TCAGATTTTCCTTCAGCTGTTCATGAGTTGGTCGATGCCGAATTTGTTGATGCATTTAAATAAACTCCTCAAATGTGGTT
GGATTCTGGTTCGAAAGTTGATAGGATCACCCATGTTCTCAAATTCTAGAGTTGCCGCGACATCGTCACTCTCATCCTCG
ACGATCATATTGTGCATGATCAAACAACATGTCATCACCT
>chr2D_202
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-----------------------------------------CTGATGCTAAGAATTCTTAAGAATTAGGTCAGTACTATA
---AACATGGAGTATGAACATGTCGTGACAGTGGCACACACAACAAGGAACAATAATATGCTGGTGTGGCATTCAAAATA
TTCGAAACGGACCTGAAACCTAGGGCATGCACTATAGCTCTGCAGACTGCAGTGTTTGTTGCTTGCACAGGAAAACCCAT
TAAATACTCCCTGGTGAGTAGATTGAGATTCCATCAGATGAGAGAGCTTCCAGAGTTGGATCGGTGTCACTA--------
-CCTGCGCGCGTGACTGGCAGGTTGGGCATGCTTTTCTCACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACC
AGTAGGA--------AATTTTGGCAGACGGAAACCAAAACCACCGGTAGGAGTTGACAATACAGTAGCAGAACCTTAGCT
CTACCAAACTATCCTCGCCGCCTCAGATCAGATGCTG--------------GGCCAAGCCAATCTGTAGCGGCTACGGCG
TAC-------TACAAAACGGTCTCGATCGAGCGCGCGCGGCTGAGCAAACGACAAGCAACCTCGACGCTGCGGGGGGTGC
CGGTCCCCTCCTCGGCTGTTCAGTGCAGTCACGAGACGGACGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCTCTGCC
CTGCGCTTCTCCTGATTTTAGTAAGTTTCCTCCACGCCACTGGTCACGTTATATCTGCGCTACANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGACGCCGGCGGCATGGGCGCGATGCCGATGCCGCCACCGCCGGCCGACCACGCGGCAACGAAG
GCGGCGGCGCCGCACAAGATGATGGGGATGATGCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGG
CTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCC
TCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAGGACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACG
GCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGC
GGCAGTCGCCGGCCACGCCGTGGGGTTCCTCTTCGCGCGGAGCAGAGTGCGCACCGGCGCGGCGCGCGGGAATGTCACAT
CCCCTGAGCTCTGTGGCGTCCCGCCGTCGCACGCGTCCAAGCCTTAGTCAGATTCCTGTGAAAATTGCTTCTGTGATCTT
CTTGTACTAGCCCTGCCCTATCACTATGTCAGATCCAATGTGTACTGGTACCA-------CTAAA-----------TCCT
ACTCCTACTCCACAAGTCCAGATACTTGCTGAAACATGTGTTTACATCTGTCTTATACAGGGCCTAACCAGCGACCAGTA
GTGATCTCGTTTTACGAAGGTGTCTATTTTGTTTCTCTCAACTATTGTCCGTGTTTAGACTCCATCCCCAAATTCCCAAA
CCGATAAACTCTTCAAACTAAACTTCCGATGCTCACATACTTTA--------GTTTTCATTATGTCCACCAGGTAGGAGA
AAGAGCTTCCGATGCTCACATAC------TTTTTTTTTTACAAAAAAGTTGATCTATCTATTA---------------TA
TATATTATCTATCTATTACTATATAATTGTACACTAAAACTAAGATTTATCAACGGTTAATATTTTAGTAGATGTGAAAG
TAATAAACGCACGTAAAAAATAGCAAGTAATGAACGCAAAAAAAATTAACTCACGCAAAGCAACTCTGC-----------
ATATTGGGCAAGGTTAGGGCATTTCCAACGGTGACCCGCAAATTTTCTCCAGCATCCGTCTGTGGACACGG-TGCGGGAG
GATGCCATCCAACCGTAGCCGCATACATCCGGCATTCCTCATATTTTTCTTAAAGTCCGCACGATCAAATAGCCGCATGC
A-------------------------------------------------------------------------------
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>chr2B_226
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-----------------------------------------------------------------TAGGTCAGTGCTAGA
---AACATGGAGTATGAACATGTCGTGACAGTGGCACACACAACAAGGAACAATAATGCGCTGGTGTGGCATTCAAAATA
TTCGAAACGGACCTGAAACCTAGGGCATGCACTATAGCTCTGCAGACCGCAGTGTTTGTTGCTTGCACAGGAAAACCCAT
TAAATACTCCCTGGTGAGTAGATTGAGATTCCATCAGATGAGGGAGCTTCCAGAGTTGGATCGGTGTCACTA--------
-CCTGCGCGCGTGACTGGCAGGTTGGGCATGCTTTTCTCACGCCAACCTAATGCGCACCCCAGCAAAACCACCGGACACC
AGTAGGA--------AATTTTGGCAGACGGAAACCAAAACCACCGGTAGGAGTTGACAATACAGTAGCAGAACCTTAGCT
CTACCAAACTATCCTCGCCGCCTCAGATCAGATGCTG--------------GGCCAAGCCAATCTGTAGCGGCTACGGCG
TAC-------TACAAAAC-GTCTCGATCGA--GCGCGCGGCTGAGCAGGCGACAAGCAACCGCGACGC------------
CGGTCCCCTCCTCGGTTGCCCAGTGCAGTCACGAGACGGACGCTCAGAGCTCCGTGCTCCGCTGCTCCCACCGCGCTGCC
CTGCGCTTCTCCTGATTTTAGTAAGTTTCCTCCGCGCCACTGGTCACGTTATATCTGCGCTACATCCCGCTGCCCCAGCG
CCTCCCCTTCGCTTGCTCTGCCCGCTTCGCTAGGAACCCAAGAAACATCTGGCAATGAGGGGCATGAGTGGC--------
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-----------------GACGCCGGCGGCATGGGCGCGATGCCGATGTCGCCACCGCCGGCCGACCACGCGGCAACGAAG
GCGGCGGCGCCGCACAAGATGATGGGGATGATGCACATGACCTTCTTCTGGGGCGACCGCGCGGTGGTCCTCTTCCCGGG
CTGGCCGGGGGAGCGCGGCGCCGGGATGTACCTCCTCTGCCTCCTCTTCGTGCTCGCCCTCGCCGCGCTCACCGAGGCCC
TCGCCCTGCTCTCGCGCCGCCTCGCCCGCCGCGGCGAGGACGGCGGCCCGGCCACGGCGGCATCTGCGGCGCTGCTGACG
GCGGTGCACGCCGCCAGGATGGGGATGGCCTACCTGGTGATGCTGGCCGTCATGTCGTTCAACGTCGGCGTCCTCCTCGC
GGCAGTCGCCGGCCACGCCGTCGGGTTCCTCTTCGCGCGGCGCAGAGTGCGCACCG------CGCGCGCGAATATCGCAT
CCCCTGAGCTCTGTGGCGTCCCGCCTTCGCACCCGTCCAAGCCTTAGTCAGATTCCGGTGAAAATTGCTTCTGTGATCTT
CTTGTACTAGCCCTGCCCTTTCACTATGTCAGATCCAATTTGTACTGGTACCCCTAAATCCTAAA-----------TCCT
ACTCCTGCTCCATAAGTCCAGATACTTGCTGAAACATGTGTTTACAAATGTCTTATACAGGGACTAACCAGCAACCACTA
GTGATCTCGTTTTACGAAGGTGTCTATTTTGTTTCTCTCAACTATTGTCCGTGTTTAGACTCCATCCTCAAATTCCCAAA
CCGATAACCTCTTCAAACTAAACTCC---ATCAAATTATGCCGTGCAGTTCTGTTTTCATTATGTCCACGATGTGGGAGG
AAGAGCTTCCGATGCTCACATAAGTACGTTTTTTTTCTGACAAAAAGGTTGATCTAGCTATCTATCTATTACTAGTACTA
TATATTATCTATCTAT---TATATAATTGTACACTAAAACTAAGATTTATCAACGGTTAATATTTTAGTGCATGTCAAAG
TAAT----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-------S-S----------S------S
SSS---------------------------------------------------------S-------------------
-------S-----------------S------------------------------------------------------
------------------------------------S-----------------------------------SSSSSSSS
S-------------------------------------------------------------------------------
-----SSSSSSSSSS----------------------S------------S-----------------------------
----------------------------S--------SSSSSSSSSSSSSS----S-----------S--S---------
---SSSSSSS--------------------------------------------------S-------------------
---------------------------S-----------S----------------------------------------
----------------------------------------S---------------------------------------
----------S--------------S-----------------------SS----------S------S-----------
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----------------------------------S-----------------------------------S--S------
----------------SS--------------------------------------------------------------
------------------------------------------------------------------------S-------
---------------------------------------------S----------------------------------
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------------------------------------------------------S-------------------------
---------------------------------------------------------------S----------------
-------------S----------------S----------------------------------SSSSSSSSSSS----
-------------------------------------------S----------------S-------------------
-----S--------------------------------------------S------------------S----------
-S------------------------SSS------------S-SSSSS--S-----------------------------
-----------------S------SSS--------------S--------------------------S-SS-SS-S-SS
SSS-----------------------------------------S-----------S-----------------------
----S--SS--S--------SS----------S------------SSSSSSSSSS--S-S-S-SSSSSSSSSSSSSSSSS
----------------------S------S-----------------SS-S----S----SS---------S--S-S---
--S-S----------------S--------S-SS--S--S-S--SSSSSS-S-----S--------------S-------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_162
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--------------------------------------------------------------TGACTGGATGGTTTGTCC
GG------------------------------------------------------------------------------
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>reverse_2503
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----------------------CTCCAACTGTGACCCGCAAA--------------------------------------
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