>input_sequence_77280
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-------------------------------------------------------------------------------T
TACGCAGCCCTTGCTTGTCTCTGACTGAC-----TGCAGGTTCAGCCGAGCTCGACCGATGGCGTCGCTCTCCGTGGCCA
CGCTCCCGCAGCTCGCCGGCGCGCCGGCGGCGGCGGCGGCGAAGAAGAGGTCCGGCGTGACGTACGTGGAGGGCATGAAC
GCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTCGCCAGGAT
CGTGGCGTCGCTCAGCCCCGCGGGGAAGAGGCGCGGGGGCTCGTTTGGCGCGCAGTGCAACGCCGCCGGGGAGATCTTCC
AGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGGCGGCCTTC
GAGGAGTCGGAGGAGTGAGTGAAACCCAACCCAACGCCGTGTGCCTGCCCTGACCAGCCGTTTCAGTTCAGTTCAGTTCA
GGCTGCTGTTTGGCTGGCGCGTAAGCCGTGATATATAAAACGTGATGTATGCT---------------------------
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>chr5D_1_TraesCS5D01G412600
AACGAGCTAGTCAAGTAGAGGCATACTAGTGACACTCTGTTTGT-CTATGTATTCACACATGTACTAAGTTTCCGGTTAA
TACAATTCTAGCATGAATAATAAACATTTATCATGATATAAGGAAATATAAATAACAACTTTATTATTGCCTCTAGGGCA
TATTTCCTTCAGGGGATTTGTCCTATGATGGGCGTGTTGGAGCTACGGCGGCAGTATGCAGGGATGAACACGGTCACTAC
CTTGGGTCCTCATCAACTGTTCTACTCGGTGTTATCAAC---------------------------CCTACAATTTTAGA
GACCATTGCTTGCCGTGAGGCTTTAGCACTTGCGGCTGATCTAACTTTGGATCACTTGATAATTGCTAGTGACTGCGAAC
CGATTGTGAATGACAT--CATAAAAGGAGTAGGAGGCCCTCATATCACAGTCGTCAAGGAGATAGATAATAGAAGAGCAC
ATTTTACT-GTTTTGATTTTATGTTCGAAGGTCGTGCTTCGAATCATGAGGCTCACAATCTTGTAAAATTTTCCGCCTCG
CCTCCGCAGGGTCACCACTTGTGG--------------------------------------------------------
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-------------CTTATTTCCCCTCATGACCCTCTTTGTATCCTTTTGAATATTGTTCCAAATTA---ATAAAGTATGG
GATCCTAAAAAAAGTAAAA--TGTA---CTACTCCTAGGCCAGCGTGTGGATTCCACGAACGACCCT--CGAAACAA---
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-----------------------------------------------------------------CAAAGGGCGAAGCAT
GCACATGTGGACCAGGTCCGGCCAATGGGGATCCATCTAGCCACCAATTGGACCTTCTCCTTTCGAGGAGCAAGGATAAA
CTGCCCTCCGGCCACCGCCCGTTCCCTCCCGCACCTTATCCTTCCCTGATCCCCCGTACAAAAACCACTC----CTTTCC
CTCTATGTGACCCACCCAACCCCAAGCACCGCAGCCGGCCACACTCCTTCCTCCT---------CCAGCGCCAAGAACTC
GACAACCACCGGAGGTAAGCAAGCAACCCAACCCACATTCCCCGCACCAGATCATCGCAGCTCGCGA--------CGGAT
TACGCAGCCCTTGCTTGTCTCTGACTGAC-----TGCAGGTTCAGCCGAGCTCGACCGATGGCGTCGCTCTCCGTGGCCA
CGCTCCCGCAGCTCGCCGGCGCGCCGGCGGCGGCGGCGGCGAAGAAGAGGTCCGGCGTGACGTACGTGGAGGGCATGAAC
GCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTCGCCAGGAT
CGTGGCGTCGCTCAGCCCCGCGGGGAAGAGGCGCGGGGGCTCGTTTGGCGCGCAGTGCAACGCCGCCGGGGAGATCTTCC
AGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGGCGGCCTTC
GAGGAGTCGGAGGAGTGAGTGAAACCCAACCCAACGCCGTGTGCCTGCCCTGACCAGCCGTTTCAGTTCAGTTCAGTTCA
GGCTGCTGTTTGGCTGGCGCGTAAGCCGTGATATATAAAACGTGATGTATGCTATTTT-ACATTTGGTTTTGTATCAATG
ACAATCGATTGATGAATACCCCGGAAACACATTTTTGGAGGCTCAGCCCTGCAAATTTGTCTCTCGATTGTTCGCTGCTT
GTCTGATTCTTCTCTAGGAAGAGTACACTTCGAAAGGGGAAATGTTTTTCGGAAAAGAAAAGAGGAAAATGTTATGCAAG
ACTGATAACACAATGTTCAAAAGTCATAATGCAACAATATCTGACACCTTGCAAACCCAAGTCATATATACTACTCCCTC
CGTCCCATAATATAAGACGTTTTTTGACTTAGTATAGTGTCAAGAAACGTCTTACATTATGGAACGGAGGGAGTACTTGA
TAGCAAGGTG-GAAATGCGGAACAAAAGTGTATTCTCTCTTCAGGC----------------------------------
-----------------------------------------TCATTCGACTCACAAGAATGGAGGTACTAGATTCCTTAT
GATGATTATGCCCATATTGACCTGA-TTTCTTCGTTTTC-----------------------------------------
---TTAGGAGGAATAAACTTCGAAAGGGGAAATGTTCTGCAACATTGATAGCACAACAATCAGAAGTCATAATGCAACGT
TGTCTGACATCTCTTCCTGACCAAAACCATGTATCGTACC----AAAGATGAAACGACAGTGTATTTTCTCATAATCTGT
CGGCATAAGTGAATGTCTTGGCTTCAGACTAGAAGATGCAATGCTATTGAGCAGAATATGTGATACAACAGGGAAT----
-AAGGTGCTACGTTTTAGCTCGATTCCTACAAGAGCACCTGTTACAGTAGCAGTAGCACTCATCAGATCATGTGTTTCTG
CACTATGGCCGACAAATAAAGTAAAACGTTCTGCAACTGAACCTCAAAATATATGTTACGGTAGCGCCGAGGCTCTAAGC
AGCATTCTAATTTTGCCCAAGTACAACAAGAGACATCTTGGGAGCACCAAATCTCCGGCAAATCCCGCAGTGCTTTGTTT
CGTTGATTACATCGGCCTCTGACAAGCCGAGAACAGCTGCCAGCTGATGAAAGCCATAACCAAG
>chr6A_1
AATGAGCTAGTCTAGTAGAGGCATACTAGGGACACTTTGTTTTGCCTATGTATTCACACATGCACTAAGTTTCCGGTTAA
TACAATTCTAGCATGAATAATAAACATTTATCATGGCATAAGGAAATATAAATAACAACTTTATTATTGCCTCTGGGGCA
TATTTCCTTCATC-------TCCCATGATGGGCGTATTGGAGCTGCGGCAGCAGTATGCAGGGATGAAGATGGTCAGTAC
CTTGGGTCCTCTGCAATTGTTATAACCGATGTTATTAG----------------------------CCTACAGTTTTAGA
GTCCATTGCTTGCCGTGAGGCTTTGCCACTTGCGGGTGGTATATATTTGAATCACTTGGTAATTTCTAGTAACTGCAAAC
CAACCATGGATGACTATGCAAAAAGGGGGTAGGAGGCCCTCATATTAGAGTCAACAAGGAGATAAATAATAGAAGAGCAC
ATTTTGCTAGTTGTAATTTTATGTCAGAAGGACGTCCTTCAAATCAGGAGATGCACAATCTTGTAAAACTGTCTGCCTCG
CTTCCATAGGGTCTCCACTTGTGG--------------------------------------------------------
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-------------CTTATTTCCCCTCATGACCCCATTTGTATCCCTTTGAATATTGTTCCGAATTA---ATAAAGTGTGG
GATCCCTAAAAAAGAAAA--------------------------------------------------------------
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>chr5A_171
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-----------GGGGTTTTGTCCAATGATGGGCGTGTTGGAGCTGCGGCGGCAGTATACAGGGATGAACACGGTCACTGC
CTTGGGTCCTCATCAATTGTTCCACCCGGTGTTATTAACCCTACAGTTTTTTTTTTGCGGGGAAACCCTACAGTTTTAGA
GACCATTGCTTGTCGTGAGGCTTTAGCACTTGCGGATGATCTATCTTTGGATCACTTGATAATTGCTAGTGTCTACAAAC
CGATTGTGGATGACAT--CATAAAAGGGGTAGGAGGCCCTCATATCACAGTCGTCAAGGAGATAGATAATAGAAGAGCAC
ATTTTACTTGTTTTGATTTTATGTTCGAAAGTCGTGCTTCAAATGATGAGGCTCGCAATTTTGTAAAATTTTC-------
-----------------------G--------------------------------------------------------
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-------------CTTATTTCCTCTCATGACCCTCTTTGTATCCCTTTGAATATTGTTCCAAATTACTAATAAAGTATGG
GATCCTAAAAAAGAAGTAAACTGTA---CTACTCCTAGGCCAGCGTGTGGATTCCACGAACGACTCTCGCGAAACAA---
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-----------------------------------------------------------------CAAAGGGGGAAGCAT
GCACATGTGGACCAGGTCCGGCCAATGGGGATCCATCTAGCCACCAATTGGACCTTCTCCTTTGGAGGAGCAAGGATAAA
CTGCCCTCCGGCCACCGCCCGTTGCCTCCCGCACCTTATCCTCCCCTGATCCCCCGTACAAAA-CCACTCCTTCCTTTCC
CTCCATGTGACCCACCCAACCCCAAGCACCGCAGCCGGCCACACTCCCTCCTCCTCCTCCTCCTCCAGCTCCAAGAACTC
CAAAAGGT------------AAGCGATCCAAGCCGCATT-CCCGTACCAGATCGCAGCTCGCCACCAATCAGCTGCGGAT
TACTCAGTCCTTGCTTTGTTTCCGTGGGTTCGCGTGCAGGTTCAGCCGAGCTCGATCGATGGCGTCGCTCTCCGTGGCCA
CGCTCCCGCAGCTGGCCGGCGCGCCGGCGGCGGCGGCGGCGAAGAAGAGGTCGGGCGTGACGTACGTGGAGGGCATGAAC
GCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTCGCCAGGAT
CGTGGCGTCGCTCAGCCCCGCGGGCAAGAGGCGCGGGGGCTCGTTCGGCGCGCAGTGCAACGCCGCCGGCGAGATCTTCC
AGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGGCGGCCTAC
GAGGAGTCGGAGGAGTGAGTGAAACCCAACCCACCGCCGTGTGCCTGCCCTGACCAGCCGTTTCAGTTCGGTTCAGGCT-
-GCTGCTGTTTGGCTGGCGCGTAAGCCGTGATATATAAAACGTGATGTATGCTATTTT-ACATTTGGTTTTGTATCAATG
ACAATTGATTGATGAATACCCCGGAAACACATTTTTGGAGGCTCAGCCCTGCAAATTTG--TCTCGATTGTCCGCCGCTT
GTATGATTCTTCTCTAGAAAGAGTACACTTCGAAAGGGAAAATGTTCATAG-----------------------------
----------------------GTCATAGTGCACCATTGTCTAACAACTTTCAGACCCAAAGTCATACA-----------
-------------------------------------------------------------------------TACTTGG
TAGTAAGGTGAGAAATCTGAAACAACAGTGTACTCTCTTCAGGCT-----------TGGAGAATAACTACAAGATTTTCA
CCCGCGGGG---------------------------------CATTCGATTCACAAGAA---------------------
------TATGCCCATGTTGACCTTAGTTTCTTAGAATTC-----------------------------------------
---CTAGGAGGAATACACTTCGAAAGGGAAAATGTTCTGCAAAACTGATAGCACAACATTCAGAAGTCATAATGCAACAT
TGTCTGACATCTTCC----------------------------------TGAAACGACGGTGTATTTTCTCGTAAATCT-
--------GTGAATGTCCTGGCTTCAGACTAGCAGATGCAATGCTATTGAGCAGAATATGCAATACACAGAACAGGGAAT
AAAGGTGCTACGTTTTAGCTCGATTCCTACAAGAGCACCTGTTACAGTGGCG------CTCATTAGATCATGTGTTTCTG
CACTATAGCAGACAAATA-AGTAAAACGTTCTGCTAAAGAACCCTCAAAAAATAGTTATGGTAGTGGCAAGGCTCTAAGC
AGCATTCTAATTTTGCCCAAGTACAACAAGAGACATCTCGGGAGCGCCCGATCTCCGGTAAAGCTAGCAGTGCTTTGTTC
TGTTGATTACATTGGCCTCTGGCAAGCCGAGAACAGCTGCCAGCTGATGAAAGCCATAACCA--
>chr5B_171
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-----------GGGGGTTTGTCCTATGATGGGCGTGTTGGAGCTGCGGTGGCAGTATGCAAGGATGAACAC---------
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------------------GGCTTTAGCACTTGCAGCTGATCTATCTTTGGATCACTTGATAATTGCTAGTGTCTGCAAAC
CGATTGTGGATGACAT--CATAAAAGGGGTAGGAGGCCCTCATATCACAGTCGTCAAGGTGATAAATAATAGAAGACCGC
ATTTTATTTGTTTTAATTTTATGTTTGAAGGTCGTGCTTCGAATCATGAGGCTCACAATTTTGTAAAATTTCCCGCCTCG
CTTCCGCAGGATGACCGCTTTTGGCTTAGGCTGGTCGTAACGGAAGTATCATAAGTGGTATCATGCATGTCAACTAGACT
TTTTGAATGATGTGGAACACAATTAAATGAGGAAAGAGAGGGTGTGGTATCATATCATGATACAATACCGTATCATATTA
AATGTTGTACTACTTTGTGTCATGCATGACAATTAAGACTAGCCACAGTGGGAGTAACTTCAGCAGTAACATCGAGTCAA
ACTCAGCAAATTTGCTTATGTGACAATGAGTTAATGAGGTTACTATGCACTGTGGTTAGTCTAATAAGGCAATCTAAGAT
ACTAACTTATAATACTATGCATTACGGACATAATATCATACACTAGTATCATATGCATGATACTAGTTTATGATACTCAC
CATTACGACCAGCCTTATTTCCTCTCGTGATCCTCTTTGTATCCCTTTGAATATTGTTCCAAATTA---ATAAAGTATGG
GATCCCTAAGAAAAAGTAAACTGTACTGCTACTACTAGGCCAGCGTGTGGATTCCACGAACGACTCC--CGAAACAACAA
GGGCCTCTTTGATTCATAGGATTGCAAAAGCACAGGAATAGGGAAAATGTAGGATCGGAATGGCATGTCCATTGGATCCC
TATGGGATTTGTGTTTGTTTGATTGTGTCACGGGAAAAACAAAGGATTTCTTCCAAGAGGTTTGAGTGGATGTTAGAATT
CCTGTGAAATGTAGTACAAATGAATCCTTAGGAAAAAAATCCTATAGGATTCAATCCTACGAATCAAACGACGAACGTAG
GGAAAATTCCCAAGGATTCTAATCCTTCAAAAATCCCATGAAAATCCTTTGAATCAAAGAGACCCCAAAGGGGGAAGCAT
GCACATGTGGACCAGGTCCGGCCAATGGGGATCCATCTGGCCACCAATTGGACCTTCTCCTTTGCAGAGGCAAGGATAAA
CTGCCCTCCGGCCACCGCCCGTTGCCTCCCGCACCTTATCCTCCCCTGATCCCCCGTACAAAA-CCACTC----CTTTCC
CTCCATGTGACCCACCCAACCCCGAGCACCGCAGCCGGCCACACTCCCTCCTCCTT---CTCCTCCAGCTCCAAGAACTC
CAAAAGGT------------AAGCAATCCAACCCACATTCCCCGTACCAGATCGTAGCTCGCCGCCGATTT-CTGCGGAT
TACTCAGCCCTTGCC-TGTTTCCGTGGGTTCGCGTGCAGGTTCAGCCGAGCTCCATCGATGGCGTCGCTCTCCGTGGCCA
CGCTCCCGCAGCTGGCCGGCGCGCCGGCGGCGGCGGCGGCCAAGAAGAGGTCCGGCGTGACGTACGTGGAGGGCATGAAC
GCCTACAGCGGCCTCAAGGGGCTCAACAAGGTGACCATGCTGGGCGTGCGCAAGAGCGCCGACTACAAGTTCGCCAGGAT
CGTGGCGTCGCTGAGCCCCGCGGGGAAGCGGCGCGGGGGCTCGTTCGGCGCGCAGTGCAACGCCGCCGGCGAGATCTTCC
AGATCGCCGTCGTCATGAACGCGCTCACGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGCCGAGGCGGCCTTC
GAGGAGTCGGAGGAGTGAGTGAAACCCAACCCAACGCCGTGTGCCTGCCCTGACCAGCCGTTTCGGTTCAGGTCAGGCTG
TTGG--------------GCGTAAGCCGTGATATATAAAACGTGATGTATGCTATTTTTACATTTGGTTTTGTATCAATG
ACAATTGATTGATGAATACCCCGGAAACACATTTTTGGAGGCTCAGCCCTGCAAATTTGTCTCTCGATTGTTCGCCACTT
GTCTGATTCTTG--TAGGAGGAATACAGTTCCAAAGGGAAAATGTTCTGCGAGATA------------------------
----ATAACACGATATTCAGAAGTCATAATGCAATATTGTCTAACATCTTGCTGATCAAAATCATATATACT--------
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--------TG-GAAATGCAGAACAACAGTGTGTTCTCCCTTCAGGATCATTCGGTCTGGAGAATTCCTACAGGATATTCA
CCCGCGGGAATTTTTGCCCCTCTATTTATTTTAAAATTTTATCACTCGACTCACAAGATTAGAGGTACGAGATTCCTTAG
GATGATTATGCCCATGTTGATCTACTCCCTCCGTCCCAAAATATAAGAGCGTTTTTGGGACGGAGGGAGTAATTTCTTCA
AATCTAGGAGGAATACACTTCGAAAGGGAAAATGTTCTGCAAGACTGATATCACAACATTCAGAAGTCATAATGCAACGT
TGTCTGACATCTCTTCCTGACCAAAACCATGTAGTAGCGGGTGTAAATATGAAATGACAGCGTATTTTCTCGTAATCTGT
CGACGTAAGTGAATATCCTGGCTTCAGTCTAAAAGAAGCAATGCTATTGAGGAGAATATGCAATACACACAAGGT---AT
AAAGGTGCTACGTTTTAGCTCGATTCCTACAAGAGCACCTGTTACAGTTGCG------CTCATTAGATCATGTGTTTCTG
CACTATAGCCGACAAATAAAGTAAAACGTTCTGCAACTGAACCTCAAAATATATGTTATCGTAGCGCCAAGGCTCTAAGC
AGCATTCTAATTTTGCCGAAGTACAACAAGAGACATCTTGGGAGCGCCAAATCTCCGGCAAATCCCGCAGTGCTTTGTTT
CGTTGATTACATCGGCCTCTGACAAGCCGAGAACAGCTGCCAGCTGATGAAAGCCATAACCA--
>SNPs
--S---------S----------------S------S-----SS------------------S-----------------
-----------------------------------SS-------------------------------------S-----
---------------S----------------------------S-----------------------------------
----------------S--------S---------S------------------------------------S-------
-------------------------------------------S--------------------------------S---
--------S------------------S----------------------------------------------------
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-S------------------------------------------------------------------------------
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--------------------------------------------S-----------------------------------
--------------S-------------------------------------------------S---------------
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------------------------------------------------------------------------S-------
---------------------------------------------------------------S----------------
-----------------------S------------------S--------------------S----------------
---S-------------------------------------------S---------------------S----------
S-S--SSSSSSSSSSSSSSS------S-----------------S--------S-S--SSSS---S--------------
---S------------SSS-SSSSSS-SS--------------------------S------------------------
-------------S------------------------------------------------------------------
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---------------------------------------------S-----------------------S----------
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----------------------------------------------------------------------------SSSS
S-------------------------------------------------------------------------------
-----S---------------------------------------------------------------------S----
--------------------------------------S-------S----SS-S-SSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------S--S----S----------------S-S---S---S------S------S-----------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S
---S---------------------S-------------------S----------------------------------
------------------------------------------------------------S-------S----------S
---------------S-------S--------S-SS--------------------------------------------
---S-----------S------------S-------------S-S-------------S---------------------
---------------------------------SSSSSSS-------S-----------------------S--------
--S-S------------S------------------------------------------SS-----SSSSS--SS----
------------------------------------------------S--SSSSSSS-----S----------------
------S---------------------------------------------------S---------S-----------
---------------------------------------------S----------------------------------
--------------------------------------------------------------SS
>forward_409
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---------------------------------------------------------------------TGACTGCGAAC
CGATTGTGA-----------------------------------------------------------------------
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>reverse_2644
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---CAAGGTGGAAATGCGGAACA---------------------------------------------------------
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